histomicstk 1.4.1.dev38__tar.gz → 1.4.1.dev40__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
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  1. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/Dockerfile +2 -1
  2. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/PKG-INFO +2 -3
  3. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/README.rst +1 -2
  4. histomicstk-1.4.1.dev40/histomicstk/_version.py +1 -0
  5. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/pyproject.toml +1 -1
  6. histomicstk-1.4.1.dev38/histomicstk/_version.py +0 -1
  7. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/.circleci/config.yml +0 -0
  8. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/.dockerignore +0 -0
  9. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/.pre-commit-config.yaml +0 -0
  10. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/AUTHORS.rst +0 -0
  11. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/CMakeLists.txt +0 -0
  12. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/CONTRIBUTING.rst +0 -0
  13. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/Dockerfile-wheels +0 -0
  14. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/LICENSE +0 -0
  15. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/MANIFEST.in +0 -0
  16. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/NOTICE +0 -0
  17. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/build_wheels.sh +0 -0
  18. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/codecov.yml +0 -0
  19. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/Makefile +0 -0
  20. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/api-docs.rst +0 -0
  21. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/authors.rst +0 -0
  22. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/conf.py +0 -0
  23. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/contributing.rst +0 -0
  24. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/examples/annotation_database_backup_and_sql_parser.ipynb +0 -0
  25. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/examples/annotations_to_object_segmentation_masks.ipynb +0 -0
  26. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/examples/annotations_to_semantic_segmentation_masks.ipynb +0 -0
  27. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/examples/color_deconvolution.ipynb +0 -0
  28. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/examples/color_normalization_and_augmentation.ipynb +0 -0
  29. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/examples/create_classifier.ipynb +0 -0
  30. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/examples/creating_gallery_images_review.ipynb +0 -0
  31. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/examples/doc_files/ModifiedHTTAnnotationProtocol.pdf +0 -0
  32. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/examples/doc_files/ModifiedNucleusAnnotationProtocol.pdf +0 -0
  33. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/examples/doc_files/NucleiClassification/inputmodel-fie.png +0 -0
  34. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/examples/doc_files/NucleiClassification/nucleiClass-panel.png +0 -0
  35. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/examples/doc_files/NucleiClassification/nucleiFeature-extraction.png +0 -0
  36. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/examples/doc_files/NucleiClassification/results.png +0 -0
  37. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/examples/doc_files/NucleiClassification/submit button.png +0 -0
  38. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/examples/introducing_the_girder_api.rst +0 -0
  39. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/examples/nuclei_classification.md +0 -0
  40. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/examples/nuclei_segmentation.ipynb +0 -0
  41. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/examples/polygon_merger_from_tiled_masks.ipynb +0 -0
  42. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/examples/polygon_merger_using_rtree.ipynb +0 -0
  43. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/examples/positive_pixel_count.ipynb +0 -0
  44. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/examples/procedure_for_typical_annotation_project.rst +0 -0
  45. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/examples/segmentation_masks_to_annotations.ipynb +0 -0
  46. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/examples/semantic_segmentation_color_thresholding_approach.ipynb +0 -0
  47. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/examples/semantic_segmentation_superpixel_approach.ipynb +0 -0
  48. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/examples/simple_tissue_detection.ipynb +0 -0
  49. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/examples/tips_for_scalable_annotation_rendering.rst +0 -0
  50. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/examples/using_large_image.ipynb +0 -0
  51. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/examples/workflows.ipynb +0 -0
  52. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/examples.rst +0 -0
  53. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/favicon.ico +0 -0
  54. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/histomicstk.annotations_and_masks.annotation_and_mask_utils.rst +0 -0
  55. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/histomicstk.annotations_and_masks.annotation_database_parser.rst +0 -0
  56. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/histomicstk.annotations_and_masks.annotations_to_object_segmentation_masks.rst +0 -0
  57. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/histomicstk.annotations_and_masks.annotations_to_semantic_segmentation_masks.rst +0 -0
  58. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/histomicstk.annotations_and_masks.masks_to_annotations_handler.rst +0 -0
  59. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/histomicstk.annotations_and_masks.polygon_merger.rst +0 -0
  60. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/histomicstk.annotations_and_masks.review_gallery.rst +0 -0
  61. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/histomicstk.annotations_and_masks.rst +0 -0
  62. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/histomicstk.features.rst +0 -0
  63. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/histomicstk.filters.edge.rst +0 -0
  64. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/histomicstk.filters.rst +0 -0
  65. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/histomicstk.filters.shape.rst +0 -0
  66. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/histomicstk.preprocessing.augmentation.rst +0 -0
  67. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/histomicstk.preprocessing.color_conversion.rst +0 -0
  68. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/histomicstk.preprocessing.color_deconvolution.rst +0 -0
  69. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/histomicstk.preprocessing.color_normalization.rst +0 -0
  70. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/histomicstk.preprocessing.rst +0 -0
  71. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/histomicstk.rst +0 -0
  72. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/histomicstk.saliency.cellularity_detection_superpixels.rst +0 -0
  73. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/histomicstk.saliency.cellularity_detection_thresholding.rst +0 -0
  74. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/histomicstk.saliency.rst +0 -0
  75. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/histomicstk.saliency.tissue_detection.rst +0 -0
  76. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/histomicstk.segmentation.label.rst +0 -0
  77. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/histomicstk.segmentation.level_set.rst +0 -0
  78. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/histomicstk.segmentation.nuclear.rst +0 -0
  79. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/histomicstk.segmentation.positive_pixel_count.rst +0 -0
  80. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/histomicstk.segmentation.rst +0 -0
  81. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/histomicstk.utils.rst +0 -0
  82. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/histomicstk.workflows.rst +0 -0
  83. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/histomicstk.workflows.specific_workflows.rst +0 -0
  84. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/histomicstk.workflows.workflow_runner.rst +0 -0
  85. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/histomicstk_mark.png +0 -0
  86. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/histomicstk_mark.svg +0 -0
  87. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/index.rst +0 -0
  88. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/installation.rst +0 -0
  89. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/make.bat +0 -0
  90. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/docs/make_docs.sh +0 -0
  91. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/__init__.py +0 -0
  92. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/annotations_and_masks/__init__.py +0 -0
  93. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/annotations_and_masks/annotation_and_mask_utils.py +0 -0
  94. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/annotations_and_masks/annotation_database_parser.py +0 -0
  95. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/annotations_and_masks/annotations_to_masks_handler.py +0 -0
  96. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/annotations_and_masks/annotations_to_object_mask_handler.py +0 -0
  97. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/annotations_and_masks/masks_to_annotations_handler.py +0 -0
  98. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/annotations_and_masks/polygon_merger.py +0 -0
  99. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/annotations_and_masks/polygon_merger_v2.py +0 -0
  100. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/annotations_and_masks/pyrtree/__init__.py +0 -0
  101. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/annotations_and_masks/pyrtree/rect.py +0 -0
  102. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/annotations_and_masks/pyrtree/rtree.py +0 -0
  103. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/annotations_and_masks/review_gallery.py +0 -0
  104. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/annotations_and_masks/tests/test_annotation_and_mask_utils.py +0 -0
  105. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/annotations_and_masks/tests/test_annotation_database_parser.py +0 -0
  106. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/annotations_and_masks/tests/test_annotations_to_masks_handler.py +0 -0
  107. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/annotations_and_masks/tests/test_annotations_to_object_mask_handler.py +0 -0
  108. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/annotations_and_masks/tests/test_masks_to_annotations_handler.py +0 -0
  109. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/annotations_and_masks/tests/test_polygon_merger.py +0 -0
  110. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/annotations_and_masks/tests/test_review_gallery.py +0 -0
  111. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/cli/BackgroundIntensity/BackgroundIntensity.py +0 -0
  112. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/cli/BackgroundIntensity/BackgroundIntensity.xml +0 -0
  113. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/cli/BackgroundIntensity/__init__.py +0 -0
  114. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/cli/ColorDeconvolution/ColorDeconvolution.py +0 -0
  115. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/cli/ColorDeconvolution/ColorDeconvolution.xml +0 -0
  116. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/cli/ColorDeconvolution/__init__.py +0 -0
  117. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/cli/ComputeNucleiFeatures/ComputeNucleiFeatures.py +0 -0
  118. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/cli/ComputeNucleiFeatures/ComputeNucleiFeatures.xml +0 -0
  119. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/cli/ComputeNucleiFeatures/README.md +0 -0
  120. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/cli/ComputeNucleiFeatures/__init__.py +0 -0
  121. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/cli/NucleiClassification/NucleiClassification.py +0 -0
  122. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/cli/NucleiClassification/NucleiClassification.xml +0 -0
  123. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/cli/NucleiClassification/__init__.py +0 -0
  124. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/cli/NucleiDetection/NucleiDetection.py +0 -0
  125. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/cli/NucleiDetection/NucleiDetection.xml +0 -0
  126. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/cli/NucleiDetection/__init__.py +0 -0
  127. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/cli/PositivePixelCount/PositivePixelCount.py +0 -0
  128. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/cli/PositivePixelCount/PositivePixelCount.xml +0 -0
  129. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/cli/PositivePixelCount/__init__.py +0 -0
  130. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/cli/SeparateStainsMacenkoPCA/SeparateStainsMacenkoPCA.py +0 -0
  131. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/cli/SeparateStainsMacenkoPCA/SeparateStainsMacenkoPCA.xml +0 -0
  132. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/cli/SeparateStainsMacenkoPCA/__init__.py +0 -0
  133. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/cli/SeparateStainsXuSnmf/SeparateStainsXuSnmf.py +0 -0
  134. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/cli/SeparateStainsXuSnmf/SeparateStainsXuSnmf.xml +0 -0
  135. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/cli/SeparateStainsXuSnmf/__init__.py +0 -0
  136. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/cli/SuperpixelSegmentation/SuperpixelSegmentation.py +0 -0
  137. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/cli/SuperpixelSegmentation/SuperpixelSegmentation.xml +0 -0
  138. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/cli/SuperpixelSegmentation/__init__.py +0 -0
  139. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/cli/__init__.py +0 -0
  140. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/cli/__main__.py +0 -0
  141. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/cli/dask_config.yaml +0 -0
  142. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/cli/docker-entrypoint.sh +0 -0
  143. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/cli/slicer_cli_list.json +0 -0
  144. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/cli/utils.py +0 -0
  145. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/features/CMakeLists.txt +0 -0
  146. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/features/__init__.py +0 -0
  147. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/features/_compute_marginal_glcm_probs_cython.pyx +0 -0
  148. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/features/compute_fsd_features.py +0 -0
  149. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/features/compute_global_cell_graph_features.py +0 -0
  150. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/features/compute_gradient_features.py +0 -0
  151. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/features/compute_haralick_features.py +0 -0
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  291. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/tests/test_files/annotations_and_masks/polygon_merger_roi_masks/TCGA-A2-A0YE-01Z-00-DX1.8A2E3094-5755-42BC-969D-7F0A2ECA0F39_left-45374_top-43750_mag-BASE.png +0 -0
  292. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/tests/test_files/annotations_and_masks/polygon_merger_roi_masks/TCGA-A2-A0YE-01Z-00-DX1.8A2E3094-5755-42BC-969D-7F0A2ECA0F39_left-45374_top-44262_mag-BASE.png +0 -0
  293. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/tests/test_files/annotations_and_masks/polygon_merger_roi_masks/TCGA-A2-A0YE-01Z-00-DX1.8A2E3094-5755-42BC-969D-7F0A2ECA0F39_left-45374_top-44774_mag-BASE.png +0 -0
  294. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/tests/test_files/annotations_and_masks/polygon_merger_roi_masks/TCGA-A2-A0YE-01Z-00-DX1.8A2E3094-5755-42BC-969D-7F0A2ECA0F39_left-45374_top-45286_mag-BASE.png +0 -0
  295. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/tests/test_files/annotations_and_masks/polygon_merger_roi_masks/TCGA-A2-A0YE-01Z-00-DX1.8A2E3094-5755-42BC-969D-7F0A2ECA0F39_left-45374_top-45798_mag-BASE.png +0 -0
  296. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/tests/test_files/annotations_and_masks/polygon_merger_roi_masks/TCGA-A2-A0YE-01Z-00-DX1.8A2E3094-5755-42BC-969D-7F0A2ECA0F39_left-45886_top-43750_mag-BASE.png +0 -0
  297. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/tests/test_files/annotations_and_masks/polygon_merger_roi_masks/TCGA-A2-A0YE-01Z-00-DX1.8A2E3094-5755-42BC-969D-7F0A2ECA0F39_left-45886_top-44262_mag-BASE.png +0 -0
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  299. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/tests/test_files/annotations_and_masks/polygon_merger_roi_masks/TCGA-A2-A0YE-01Z-00-DX1.8A2E3094-5755-42BC-969D-7F0A2ECA0F39_left-45886_top-45286_mag-BASE.png +0 -0
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  307. {histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/tests/test_segmentation_label.py +0 -0
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{histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/Dockerfile RENAMED
@@ -90,6 +90,7 @@ RUN python -m slicer_cli_web.cli_list_entrypoint ColorDeconvolution --help
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  # Debug import time
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  RUN python -X importtime ColorDeconvolution/ColorDeconvolution.py --help
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- ENV PYTHONUNBUFFERED=TRUE
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+ ENV PYTHONUNBUFFERED=TRUE \
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+ LD_PRELOAD=/lib/x86_64-linux-gnu/libstdc++.so.6
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  ENTRYPOINT ["/bin/bash", "docker-entrypoint.sh"]
{histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.2
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  Name: histomicstk
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- Version: 1.4.1.dev38
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+ Version: 1.4.1.dev40
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  Summary: A Python toolkit for Histopathology Image Analysis
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  Keywords: histomicstk
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  Author-Email: "Kitware, Inc." <developers@digitalslidearchive.net>
@@ -83,8 +83,7 @@ HistomicsTK can be used in two ways:
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  $ git clone https://github.com/DigitalSlideArchive/HistomicsTK/
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  $ cd HistomicsTK/
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- $ python -m pip install setuptools-scm "Cython>=0.25.2" "scikit-build>=0.8.1" "cmake>=0.6.0" "numpy>=1.12.1"
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- $ python -m pip install -e .
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+ $ python -m pip install -e . --find-links https://girder.github.io/large_image_wheels
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  HistomicsTK uses the `large_image`_ library to read content from whole-slide and microscopy image formats. Depending on your exact system, installing the necessary libraries to support these formats can be complex. There are some non-official prebuilt libraries available for Linux that can be included as part of the installation by specifying ``pip install histomicstk --find-links https://girder.github.io/large_image_wheels``. Note that if you previously installed HistomicsTK or large_image without these, you may need to add ``--force-reinstall --no-cache-dir`` to the ``pip install`` command to force it to use the find-links option.
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{histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/README.rst RENAMED
@@ -40,8 +40,7 @@ HistomicsTK can be used in two ways:
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  $ git clone https://github.com/DigitalSlideArchive/HistomicsTK/
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  $ cd HistomicsTK/
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- $ python -m pip install setuptools-scm "Cython>=0.25.2" "scikit-build>=0.8.1" "cmake>=0.6.0" "numpy>=1.12.1"
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- $ python -m pip install -e .
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+ $ python -m pip install -e . --find-links https://girder.github.io/large_image_wheels
45
44
 
46
45
  HistomicsTK uses the `large_image`_ library to read content from whole-slide and microscopy image formats. Depending on your exact system, installing the necessary libraries to support these formats can be complex. There are some non-official prebuilt libraries available for Linux that can be included as part of the installation by specifying ``pip install histomicstk --find-links https://girder.github.io/large_image_wheels``. Note that if you previously installed HistomicsTK or large_image without these, you may need to add ``--force-reinstall --no-cache-dir`` to the ``pip install`` command to force it to use the find-links option.
47
46
 
histomicstk-1.4.1.dev40/histomicstk/_version.py ADDED
@@ -0,0 +1 @@
1
+ __version__ = '1.4.1.dev40'
{histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/pyproject.toml RENAMED
@@ -3,7 +3,7 @@ requires = ["scikit-build-core>=0.7", "setuptools-scm", "cython>=0.29", "numpy"]
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3
  build-backend = "scikit_build_core.build"
4
4
 
5
5
  [project]
6
- version = "1.4.1.dev38"
6
+ version = "1.4.1.dev40"
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7
  name = "histomicstk"
8
8
  description = "A Python toolkit for Histopathology Image Analysis"
9
9
  readme = "README.rst"
histomicstk-1.4.1.dev38/histomicstk/_version.py DELETED
@@ -1 +0,0 @@
1
- __version__ = '1.4.1.dev38'
{histomicstk-1.4.1.dev38 → histomicstk-1.4.1.dev40}/histomicstk/annotations_and_masks/tests/test_masks_to_annotations_handler.py RENAMED
File without changes