histomicstk 1.4.1.dev1__tar.gz → 1.4.1.dev3__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
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  1. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/PKG-INFO +23 -7
  2. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/README.rst +22 -6
  3. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/AUTHORS.rst +0 -0
  4. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/CMakeLists.txt +0 -0
  5. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/CONTRIBUTING.rst +0 -0
  6. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/LICENSE +0 -0
  7. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/NOTICE +0 -0
  8. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/__init__.py +0 -0
  9. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/annotations_and_masks/__init__.py +0 -0
  10. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/annotations_and_masks/annotation_and_mask_utils.py +0 -0
  11. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/annotations_and_masks/annotation_database_parser.py +0 -0
  12. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/annotations_and_masks/annotations_to_masks_handler.py +0 -0
  13. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/annotations_and_masks/annotations_to_object_mask_handler.py +0 -0
  14. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/annotations_and_masks/masks_to_annotations_handler.py +0 -0
  15. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/annotations_and_masks/polygon_merger.py +0 -0
  16. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/annotations_and_masks/polygon_merger_v2.py +0 -0
  17. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/annotations_and_masks/pyrtree/__init__.py +0 -0
  18. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/annotations_and_masks/pyrtree/rect.py +0 -0
  19. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/annotations_and_masks/pyrtree/rtree.py +0 -0
  20. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/annotations_and_masks/review_gallery.py +0 -0
  21. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/annotations_and_masks/tests/test_annotation_and_mask_utils.py +0 -0
  22. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/annotations_and_masks/tests/test_annotation_database_parser.py +0 -0
  23. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/annotations_and_masks/tests/test_annotations_to_masks_handler.py +0 -0
  24. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/annotations_and_masks/tests/test_annotations_to_object_mask_handler.py +0 -0
  25. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/annotations_and_masks/tests/test_masks_to_annotations_handler.py +0 -0
  26. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/annotations_and_masks/tests/test_polygon_merger.py +0 -0
  27. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/annotations_and_masks/tests/test_review_gallery.py +0 -0
  28. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/cli/BackgroundIntensity/BackgroundIntensity.py +0 -0
  29. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/cli/BackgroundIntensity/BackgroundIntensity.xml +0 -0
  30. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/cli/BackgroundIntensity/__init__.py +0 -0
  31. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/cli/ColorDeconvolution/ColorDeconvolution.py +0 -0
  32. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/cli/ColorDeconvolution/ColorDeconvolution.xml +0 -0
  33. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/cli/ColorDeconvolution/__init__.py +0 -0
  34. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/cli/ComputeNucleiFeatures/ComputeNucleiFeatures.py +0 -0
  35. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/cli/ComputeNucleiFeatures/ComputeNucleiFeatures.xml +0 -0
  36. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/cli/ComputeNucleiFeatures/README.md +0 -0
  37. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/cli/ComputeNucleiFeatures/__init__.py +0 -0
  38. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/cli/NucleiClassification/NucleiClassification.py +0 -0
  39. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/cli/NucleiClassification/NucleiClassification.xml +0 -0
  40. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/cli/NucleiClassification/__init__.py +0 -0
  41. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/cli/NucleiDetection/NucleiDetection.py +0 -0
  42. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/cli/NucleiDetection/NucleiDetection.xml +0 -0
  43. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/cli/NucleiDetection/__init__.py +0 -0
  44. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/cli/PositivePixelCount/PositivePixelCount.py +0 -0
  45. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/cli/PositivePixelCount/PositivePixelCount.xml +0 -0
  46. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/cli/PositivePixelCount/__init__.py +0 -0
  47. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/cli/SeparateStainsMacenkoPCA/SeparateStainsMacenkoPCA.py +0 -0
  48. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/cli/SeparateStainsMacenkoPCA/SeparateStainsMacenkoPCA.xml +0 -0
  49. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/cli/SeparateStainsMacenkoPCA/__init__.py +0 -0
  50. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/cli/SeparateStainsXuSnmf/SeparateStainsXuSnmf.py +0 -0
  51. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/cli/SeparateStainsXuSnmf/SeparateStainsXuSnmf.xml +0 -0
  52. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/cli/SeparateStainsXuSnmf/__init__.py +0 -0
  53. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/cli/SuperpixelSegmentation/SuperpixelSegmentation.py +0 -0
  54. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/cli/SuperpixelSegmentation/SuperpixelSegmentation.xml +0 -0
  55. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/cli/SuperpixelSegmentation/__init__.py +0 -0
  56. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/cli/__init__.py +0 -0
  57. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/cli/__main__.py +0 -0
  58. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/cli/dask_config.yaml +0 -0
  59. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/cli/docker-entrypoint.sh +0 -0
  60. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/cli/slicer_cli_list.json +0 -0
  61. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/cli/utils.py +0 -0
  62. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/features/CMakeLists.txt +0 -0
  63. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/features/__init__.py +0 -0
  64. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/features/_compute_marginal_glcm_probs_cython.pyx +0 -0
  65. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/features/compute_fsd_features.py +0 -0
  66. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/features/compute_global_cell_graph_features.py +0 -0
  67. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/features/compute_gradient_features.py +0 -0
  68. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/features/compute_haralick_features.py +0 -0
  69. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/features/compute_intensity_features.py +0 -0
  70. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/features/compute_morphometry_features.py +0 -0
  71. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/features/compute_nuclei_features.py +0 -0
  72. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/features/graycomatrixext.py +0 -0
  73. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/filters/__init__.py +0 -0
  74. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/filters/edge/__init__.py +0 -0
  75. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/filters/edge/gaussian_grad.py +0 -0
  76. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/filters/shape/__init__.py +0 -0
  77. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/filters/shape/cdog.py +0 -0
  78. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/filters/shape/clog.py +0 -0
  79. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/filters/shape/glog.py +0 -0
  80. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/filters/shape/vesselness.py +0 -0
  81. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/preprocessing/__init__.py +0 -0
  82. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/preprocessing/augmentation/__init__.py +0 -0
  83. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/preprocessing/augmentation/color_augmentation.py +0 -0
  84. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/preprocessing/color_conversion/__init__.py +0 -0
  85. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/preprocessing/color_conversion/lab_mean_std.py +0 -0
  86. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/preprocessing/color_conversion/lab_to_rgb.py +0 -0
  87. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/preprocessing/color_conversion/od_to_rgb.py +0 -0
  88. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/preprocessing/color_conversion/rgb_to_hsi.py +0 -0
  89. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/preprocessing/color_conversion/rgb_to_lab.py +0 -0
  90. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/preprocessing/color_conversion/rgb_to_od.py +0 -0
  91. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/preprocessing/color_conversion/rgb_to_sda.py +0 -0
  92. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/preprocessing/color_conversion/sda_to_rgb.py +0 -0
  93. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/preprocessing/color_deconvolution/__init__.py +0 -0
  94. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/preprocessing/color_deconvolution/_linalg.py +0 -0
  95. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/preprocessing/color_deconvolution/color_convolution.py +0 -0
  96. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/preprocessing/color_deconvolution/color_deconvolution.py +0 -0
  97. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/preprocessing/color_deconvolution/complement_stain_matrix.py +0 -0
  98. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/preprocessing/color_deconvolution/find_stain_index.py +0 -0
  99. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/preprocessing/color_deconvolution/rgb_separate_stains_macenko_pca.py +0 -0
  100. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/preprocessing/color_deconvolution/rgb_separate_stains_xu_snmf.py +0 -0
  101. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/preprocessing/color_deconvolution/separate_stains_macenko_pca.py +0 -0
  102. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/preprocessing/color_deconvolution/separate_stains_xu_snmf.py +0 -0
  103. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/preprocessing/color_deconvolution/stain_color_map.py +0 -0
  104. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/preprocessing/color_normalization/__init__.py +0 -0
  105. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/preprocessing/color_normalization/background_intensity.py +0 -0
  106. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/preprocessing/color_normalization/deconvolution_based_normalization.py +0 -0
  107. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/preprocessing/color_normalization/reinhard.py +0 -0
  108. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/preprocessing/color_normalization/reinhard_stats.py +0 -0
  109. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/preprocessing/tests/test_normalization_and_augmentation.py +0 -0
  110. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/saliency/__init__.py +0 -0
  111. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/saliency/cellularity_detection_superpixels.py +0 -0
  112. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/saliency/cellularity_detection_thresholding.py +0 -0
  113. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/saliency/tests/test_saliency.py +0 -0
  114. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/saliency/tissue_detection.py +0 -0
  115. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/segmentation/__init__.py +0 -0
  116. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/segmentation/embed_boundaries.py +0 -0
  117. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/segmentation/label/CMakeLists.txt +0 -0
  118. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/segmentation/label/__init__.py +0 -0
  119. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/segmentation/label/_trace_object_boundaries_cython.pyx +0 -0
  120. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/segmentation/label/area_open.py +0 -0
  121. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/segmentation/label/compact.py +0 -0
  122. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/segmentation/label/condense.py +0 -0
  123. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/segmentation/label/delete.py +0 -0
  124. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/segmentation/label/delete_border.py +0 -0
  125. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/segmentation/label/delete_overlap.py +0 -0
  126. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/segmentation/label/dilate_xor.py +0 -0
  127. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/segmentation/label/perimeter.py +0 -0
  128. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/segmentation/label/remove_overlap_nuclei.py +0 -0
  129. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/segmentation/label/shuffle.py +0 -0
  130. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/segmentation/label/split.py +0 -0
  131. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/segmentation/label/trace_object_boundaries.py +0 -0
  132. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/segmentation/label/width_open.py +0 -0
  133. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/segmentation/level_set/__init__.py +0 -0
  134. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/segmentation/level_set/chan_vese.py +0 -0
  135. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/segmentation/level_set/reg_edge.py +0 -0
  136. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/segmentation/nuclear/CMakeLists.txt +0 -0
  137. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/segmentation/nuclear/__init__.py +0 -0
  138. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/segmentation/nuclear/_max_clustering_cython.pyx +0 -0
  139. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/segmentation/nuclear/detect_nuclei_kofahi.py +0 -0
  140. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/segmentation/nuclear/detect_tile_nuclei.py +0 -0
  141. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/segmentation/nuclear/gaussian_voting.py +0 -0
  142. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/segmentation/nuclear/gvf_tracking.py +0 -0
  143. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/segmentation/nuclear/max_clustering.py +0 -0
  144. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/segmentation/nuclear/min_model.py +0 -0
  145. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/segmentation/positive_pixel_count.py +0 -0
  146. {histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/histomicstk/segmentation/rag.py +0 -0
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{histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/PKG-INFO RENAMED
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  Metadata-Version: 2.2
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  Name: histomicstk
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- Version: 1.4.1.dev1
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+ Version: 1.4.1.dev3
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  Summary: A Python toolkit for Histopathology Image Analysis
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  Home-page: https://github.com/DigitalSlideArchive/HistomicsTK
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  Author: Kitware, Inc.
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  Dynamic: requires-python
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  Dynamic: summary
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- ========================
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- HistomicsTK |codecov-io|
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- ========================
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+ ===========
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+ HistomicsTK
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+ ===========
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- .. |codecov-io| image:: https://codecov.io/github/DigitalSlideArchive/HistomicsTK/coverage.svg?branch=master
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- :target: https://codecov.io/github/DigitalSlideArchive/HistomicsTK?branch=master
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- :alt: codecov.io
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+ .. image:: https://raw.githubusercontent.com/DigitalSlideArchive/HistomicsTK/master/docs/histomicstk_mark.svg
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+ :target: https://github.com/DigitalSlideArchive/HistomicsTK
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+ :width: 100
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+ :height: 100
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+ :align: left
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+ .. image:: https://codecov.io/github/DigitalSlideArchive/HistomicsTK/coverage.svg?branch=master
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+ :target: https://codecov.io/github/DigitalSlideArchive/HistomicsTK?branch=master
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+ :alt: codecov.io
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+
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+ .. image:: https://img.shields.io/badge/license-Apache%202-blue.svg
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+ :target: https://raw.githubusercontent.com/girder/large_image/master/LICENSE
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+ :alt: License
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+
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+ .. image:: https://img.shields.io/badge/DOI-10.5281%2Fzenodo.14833780-blue.svg
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+ :target: https://doi.org/10.5281/zenodo.14833780
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+ .. image:: https://img.shields.io/pypi/v/histomicstk.svg?logo=python&logoColor=white
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+ :target: https://pypi.org/project/histomicstk/
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  `HistomicsTK`_ is a Python package for the analysis of digital pathology images. It can function as a stand-alone library, or as a Digital Slide Archive plugin that allows users to invoke image analysis jobs through HistomicsUI. The functionality offered by HistomicsTK can be extended using `slicer cli web <https://github.com/girder/slicer_cli_web>`__ which allows developers to integrate their image analysis algorithms into DSA for dissemination through HistomicsUI.
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{histomicstk-1.4.1.dev1 → histomicstk-1.4.1.dev3}/README.rst RENAMED
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- ========================
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- HistomicsTK |codecov-io|
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- ========================
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+ ===========
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+ HistomicsTK
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+ ===========
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- .. |codecov-io| image:: https://codecov.io/github/DigitalSlideArchive/HistomicsTK/coverage.svg?branch=master
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- :target: https://codecov.io/github/DigitalSlideArchive/HistomicsTK?branch=master
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- :alt: codecov.io
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+ .. image:: https://raw.githubusercontent.com/DigitalSlideArchive/HistomicsTK/master/docs/histomicstk_mark.svg
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+ :target: https://github.com/DigitalSlideArchive/HistomicsTK
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+ :width: 100
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+ :height: 100
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+ :align: left
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+ .. image:: https://codecov.io/github/DigitalSlideArchive/HistomicsTK/coverage.svg?branch=master
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+ :target: https://codecov.io/github/DigitalSlideArchive/HistomicsTK?branch=master
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+ :alt: codecov.io
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+
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+ .. image:: https://img.shields.io/badge/license-Apache%202-blue.svg
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+ :target: https://raw.githubusercontent.com/girder/large_image/master/LICENSE
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+ :alt: License
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+
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+ .. image:: https://img.shields.io/badge/DOI-10.5281%2Fzenodo.14833780-blue.svg
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+ :target: https://doi.org/10.5281/zenodo.14833780
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+
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+ .. image:: https://img.shields.io/pypi/v/histomicstk.svg?logo=python&logoColor=white
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+ :target: https://pypi.org/project/histomicstk/
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  `HistomicsTK`_ is a Python package for the analysis of digital pathology images. It can function as a stand-alone library, or as a Digital Slide Archive plugin that allows users to invoke image analysis jobs through HistomicsUI. The functionality offered by HistomicsTK can be extended using `slicer cli web <https://github.com/girder/slicer_cli_web>`__ which allows developers to integrate their image analysis algorithms into DSA for dissemination through HistomicsUI.
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