hic-sca 0.1.0b4__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (21) hide show
  1. hic_sca-0.1.0b4/.gitattributes +1 -0
  2. hic_sca-0.1.0b4/.github/workflows/pypi-publish.yml +49 -0
  3. hic_sca-0.1.0b4/.gitignore +107 -0
  4. hic_sca-0.1.0b4/LICENSE +21 -0
  5. hic_sca-0.1.0b4/MANIFEST.in +1 -0
  6. hic_sca-0.1.0b4/PKG-INFO +646 -0
  7. hic_sca-0.1.0b4/README.md +616 -0
  8. hic_sca-0.1.0b4/RESULTS_STRUCTURE.md +203 -0
  9. hic_sca-0.1.0b4/hic_sca.egg-info/PKG-INFO +646 -0
  10. hic_sca-0.1.0b4/hic_sca.egg-info/SOURCES.txt +19 -0
  11. hic_sca-0.1.0b4/hic_sca.egg-info/dependency_links.txt +1 -0
  12. hic_sca-0.1.0b4/hic_sca.egg-info/entry_points.txt +2 -0
  13. hic_sca-0.1.0b4/hic_sca.egg-info/requires.txt +12 -0
  14. hic_sca-0.1.0b4/hic_sca.egg-info/top_level.txt +1 -0
  15. hic_sca-0.1.0b4/hicsca/__init__.py +31 -0
  16. hic_sca-0.1.0b4/hicsca/evals.py +927 -0
  17. hic_sca-0.1.0b4/hicsca/formats.py +841 -0
  18. hic_sca-0.1.0b4/hicsca/hicsca.py +1634 -0
  19. hic_sca-0.1.0b4/hicsca/hicsca_cli.py +377 -0
  20. hic_sca-0.1.0b4/pyproject.toml +52 -0
  21. hic_sca-0.1.0b4/setup.cfg +4 -0
hic_sca-0.1.0b4/.gitattributes ADDED
@@ -0,0 +1 @@
1
+ *.hic filter=lfs diff=lfs merge=lfs -text
hic_sca-0.1.0b4/.github/workflows/pypi-publish.yml ADDED
@@ -0,0 +1,49 @@
1
+ name: Upload Python Package To Pypi
2
+
3
+ on:
4
+ workflow_dispatch:
5
+ release:
6
+ types: [published]
7
+
8
+ permissions:
9
+ contents: read
10
+
11
+ jobs:
12
+ release-build:
13
+ runs-on: ubuntu-latest
14
+
15
+ steps:
16
+ - uses: actions/checkout@v5
17
+
18
+ - uses: actions/setup-python@v5
19
+ with:
20
+ python-version: "3.10"
21
+
22
+ - name: build release distributions
23
+ run: |
24
+ python -m pip install build
25
+ python -m build
26
+ - name: upload dists
27
+ uses: actions/upload-artifact@v4
28
+ with:
29
+ name: release-dists
30
+ path: dist/
31
+
32
+ pypi-publish:
33
+ runs-on: ubuntu-latest
34
+ needs:
35
+ - release-build
36
+ permissions:
37
+ id-token: write
38
+ environment:
39
+ name: pypi
40
+ url: https://pypi.org/p/hic-sca
41
+ steps:
42
+ - name: Retrieve release distributions
43
+ uses: actions/download-artifact@v5
44
+ with:
45
+ name: release-dists
46
+ path: dist/
47
+
48
+ - name: Publish release distributions to PyPI
49
+ uses: pypa/gh-action-pypi-publish@release/v1
hic_sca-0.1.0b4/.gitignore ADDED
@@ -0,0 +1,107 @@
1
+ # Byte-compiled / optimized / DLL files
2
+ __pycache__/
3
+ *.py[cod]
4
+ *$py.class
5
+
6
+ # C extensions
7
+ *.so
8
+
9
+ # Distribution / packaging
10
+ .Python
11
+ build/
12
+ develop-eggs/
13
+ dist/
14
+ downloads/
15
+ eggs/
16
+ .eggs/
17
+ lib/
18
+ lib64/
19
+ parts/
20
+ sdist/
21
+ var/
22
+ wheels/
23
+ pip-wheel-metadata/
24
+ share/python-wheels/
25
+ *.egg-info/
26
+ .installed.cfg
27
+ *.egg
28
+ MANIFEST
29
+
30
+ # PyInstaller
31
+ *.manifest
32
+ *.spec
33
+
34
+ # Installer logs
35
+ pip-log.txt
36
+ pip-delete-this-directory.txt
37
+
38
+ # Unit test / coverage reports
39
+ htmlcov/
40
+ .tox/
41
+ .nox/
42
+ .coverage
43
+ .coverage.*
44
+ .cache
45
+ nosetests.xml
46
+ coverage.xml
47
+ *.cover
48
+ *.py,cover
49
+ .hypothesis/
50
+ .pytest_cache/
51
+
52
+ # Jupyter Notebook
53
+ .ipynb_checkpoints
54
+
55
+ # IPython
56
+ profile_default/
57
+ ipython_config.py
58
+
59
+ # pyenv
60
+ .python-version
61
+
62
+ # Environments
63
+ .env
64
+ .venv
65
+ env/
66
+ venv/
67
+ ENV/
68
+ env.bak/
69
+ venv.bak/
70
+
71
+ # Spyder project settings
72
+ .spyderproject
73
+ .spyproject
74
+
75
+ # Rope project settings
76
+ .ropeproject
77
+
78
+ # mkdocs documentation
79
+ /site
80
+
81
+ # mypy
82
+ .mypy_cache/
83
+ .dmypy.json
84
+ dmypy.json
85
+
86
+ # Pyre type checker
87
+ .pyre/
88
+
89
+ # Data files
90
+ *.npy
91
+ *.npz
92
+
93
+ # IDE settings
94
+ .vscode/
95
+ .idea/
96
+ *.swp
97
+ *.swo
98
+ *~
99
+
100
+ # OS files
101
+ .DS_Store
102
+ Thumbs.db
103
+
104
+ # Large output files
105
+ *.log
106
+ results/
107
+ output/
hic_sca-0.1.0b4/LICENSE ADDED
@@ -0,0 +1,21 @@
1
+ MIT License
2
+
3
+ Copyright (c) 2025 Molecular Modelling and Simulation Team, iQLS, QST
4
+
5
+ Permission is hereby granted, free of charge, to any person obtaining a copy
6
+ of this software and associated documentation files (the "Software"), to deal
7
+ in the Software without restriction, including without limitation the rights
8
+ to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
9
+ copies of the Software, and to permit persons to whom the Software is
10
+ furnished to do so, subject to the following conditions:
11
+
12
+ The above copyright notice and this permission notice shall be included in all
13
+ copies or substantial portions of the Software.
14
+
15
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
16
+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
17
+ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
18
+ AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
19
+ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
20
+ OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
21
+ SOFTWARE.
hic_sca-0.1.0b4/MANIFEST.in ADDED
@@ -0,0 +1 @@
1
+ prune tests