hexkit 8.0.0__tar.gz → 8.2.0__tar.gz

{hexkit-8.0.0 → hexkit-8.2.0}/LICENSE

@@ -186,7 +186,7 @@
       same "printed page" as the copyright notice for easier
       identification within third-party archives.
 
-   Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+   Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
    for the German Human Genome-Phenome Archive (GHGA)
 
    Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0/src/hexkit.egg-info → hexkit-8.2.0}/PKG-INFO

@@ -1,10 +1,13 @@
 Metadata-Version: 2.4
 Name: hexkit
-Version: 8.0.0
+Version: 8.2.0
 Summary: A Toolkit for Building Microservices using the Hexagonal Architecture
 Author-email: "German Human Genome Phenome Archive (GHGA)" <contact@ghga.de>
 License: Apache 2.0
 Project-URL: Repository, https://github.com/ghga-de/hexkit
+Project-URL: Documentation, https://ghga-de.github.io/hexkit/
+Project-URL: Release Notes, https://github.com/ghga-de/hexkit/releases
+Project-URL: Issue Tracker, https://github.com/ghga-de/hexkit/issues
 Classifier: Development Status :: 5 - Production/Stable
 Classifier: Operating System :: POSIX :: Linux
 Classifier: Programming Language :: Python :: 3.10
@@ -23,15 +26,17 @@ Requires-Dist: pydantic<3,>=2.12
 Requires-Dist: pydantic_settings<3,>=2.12
 Requires-Dist: PyYAML<7,>=6
 Provides-Extra: akafka
-Requires-Dist: aiokafka[lz4,snappy,zstd]~=0.13.0; extra == "akafka"
+Requires-Dist: aiokafka[lz4,snappy,zstd]~=0.14.0; extra == "akafka"
 Requires-Dist: jsonschema<5,>=4.25; extra == "akafka"
 Provides-Extra: s3
 Requires-Dist: boto3<2,>=1.42; extra == "s3"
 Requires-Dist: botocore<2,>=1.42; extra == "s3"
 Provides-Extra: mongodb
-Requires-Dist: pymongo<5,>=4.15; extra == "mongodb"
+Requires-Dist: pymongo<5,>=4.16; extra == "mongodb"
 Provides-Extra: redis
 Requires-Dist: redis<8,>=7.1; extra == "redis"
+Provides-Extra: vault
+Requires-Dist: hvac<3,>=2.4; extra == "vault"
 Provides-Extra: opentelemetry-base
 Requires-Dist: opentelemetry-sdk<2,>=1.39.1; extra == "opentelemetry-base"
 Requires-Dist: opentelemetry-exporter-otlp<2,>=1.39.1; extra == "opentelemetry-base"
@@ -64,18 +69,21 @@ Requires-Dist: hexkit[opentelemetry-fastapi]; extra == "opentelemetry"
 Requires-Dist: hexkit[opentelemetry-s3]; extra == "opentelemetry"
 Provides-Extra: test-akafka
 Requires-Dist: hexkit[akafka]; extra == "test-akafka"
-Requires-Dist: testcontainers[kafka]<5,>=4.13; extra == "test-akafka"
+Requires-Dist: testcontainers[kafka]<5,>=4.14; extra == "test-akafka"
 Provides-Extra: test-s3
 Requires-Dist: hexkit[s3]; extra == "test-s3"
-Requires-Dist: testcontainers<5,>=4.13; extra == "test-s3"
+Requires-Dist: testcontainers<5,>=4.14; extra == "test-s3"
 Provides-Extra: test-mongodb
 Requires-Dist: hexkit[mongodb]; extra == "test-mongodb"
-Requires-Dist: testcontainers[mongo]<5,>=4.13; extra == "test-mongodb"
+Requires-Dist: testcontainers[mongo]<5,>=4.14; extra == "test-mongodb"
 Provides-Extra: test-redis
 Requires-Dist: hexkit[redis]; extra == "test-redis"
-Requires-Dist: testcontainers[redis]<5,>=4.13; extra == "test-redis"
+Requires-Dist: testcontainers[redis]<5,>=4.14; extra == "test-redis"
+Provides-Extra: test-vault
+Requires-Dist: hexkit[vault]; extra == "test-vault"
+Requires-Dist: testcontainers<5,>=4.14; extra == "test-vault"
 Provides-Extra: test
-Requires-Dist: hexkit[test-akafka,test-mongodb,test-s3]; extra == "test"
+Requires-Dist: hexkit[test-akafka,test-mongodb,test-s3,test-vault]; extra == "test"
 Provides-Extra: all
 Requires-Dist: hexkit[test]; extra == "all"
 Requires-Dist: hexkit[opentelemetry]; extra == "all"

{hexkit-8.0.0 → hexkit-8.2.0}/pyproject.toml

@@ -1,6 +1,6 @@
 [build-system]
 requires = [
-    "setuptools>=80.10",
+    "setuptools>=82",
 ]
 build-backend = "setuptools.build_meta"
 
@@ -23,7 +23,7 @@ classifiers = [
     "Intended Audience :: Developers",
 ]
 name = "hexkit"
-version = "8.0.0"
+version = "8.2.0"
 description = "A Toolkit for Building Microservices using the Hexagonal Architecture"
 dependencies = [
     "opentelemetry-api >=1.39, <2",
@@ -37,7 +37,7 @@ text = "Apache 2.0"
 
 [project.optional-dependencies]
 akafka = [
-    "aiokafka[zstd,lz4,snappy]~=0.13.0",
+    "aiokafka[zstd,lz4,snappy]~=0.14.0",
     "jsonschema >=4.25, <5",
 ]
 s3 = [
@@ -45,11 +45,14 @@ s3 = [
     "botocore >=1.42, <2",
 ]
 mongodb = [
-    "pymongo >=4.15, <5",
+    "pymongo >=4.16, <5",
 ]
 redis = [
     "redis >=7.1, <8",
 ]
+vault = [
+    "hvac >=2.4, <3",
+]
 opentelemetry-base = [
     "opentelemetry-sdk >=1.39.1, <2",
     "opentelemetry-exporter-otlp >=1.39.1, <2",
@@ -89,22 +92,26 @@ opentelemetry = [
 ]
 test-akafka = [
     "hexkit[akafka]",
-    "testcontainers[kafka] >=4.13, <5",
+    "testcontainers[kafka] >=4.14, <5",
 ]
 test-s3 = [
     "hexkit[s3]",
-    "testcontainers >=4.13, <5",
+    "testcontainers >=4.14, <5",
 ]
 test-mongodb = [
     "hexkit[mongodb]",
-    "testcontainers[mongo] >=4.13, <5",
+    "testcontainers[mongo] >=4.14, <5",
 ]
 test-redis = [
     "hexkit[redis]",
-    "testcontainers[redis] >=4.13, <5",
+    "testcontainers[redis] >=4.14, <5",
+]
+test-vault = [
+    "hexkit[vault]",
+    "testcontainers >=4.14, <5",
 ]
 test = [
-    "hexkit[test-akafka,test-s3,test-mongodb]",
+    "hexkit[test-akafka,test-s3,test-mongodb,test-vault]",
 ]
 all = [
     "hexkit[test]",
@@ -113,6 +120,9 @@ all = [
 
 [project.urls]
 Repository = "https://github.com/ghga-de/hexkit"
+Documentation = "https://ghga-de.github.io/hexkit/"
+"Release Notes" = "https://github.com/ghga-de/hexkit/releases"
+"Issue Tracker" = "https://github.com/ghga-de/hexkit/issues"
 
 [tool.setuptools.packages.find]
 where = [
@@ -235,7 +245,7 @@ source = [
 [tool.tox]
 legacy_tox_ini = """
     [tox]
-    env_list = py3{10,11,12,13}
+    env_list = py3{10,11,12,13}, docs
 
     [gh-actions]
     python =
@@ -244,6 +254,22 @@ legacy_tox_ini = """
         3.12: py312
         3.13: py313
 
+    [testenv:docs]
+    basepython = python3.13
+    allowlist_externals =
+        mv
+        rm
+    deps =
+        --no-deps -r ./lock/requirements-dev.txt
+    commands =
+        rm -rf site/api
+        pdoc -d google -o docs/api hexkit
+        mv docs/api/index.html docs/api/index.md
+        mkdocs build
+        mv docs/api/index.md docs/api/index.html
+        rm -rf site/api
+        mv docs/api site/api
+
     [testenv]
     pass_env =
         TC_HOST
@@ -251,6 +277,6 @@ legacy_tox_ini = """
     deps =
         --no-deps -r ./lock/requirements-dev.txt
     commands =
-        py310: pip install --no-deps backports.asyncio.runner==1.2.0 exceptiongroup==1.3.0 tomli==2.2.1
+        py310: pip install --no-deps backports.asyncio.runner==1.2.0 exceptiongroup==1.3.1 tomli==2.2.1
         pytest {posargs}
 """

{hexkit-8.0.0 → hexkit-8.2.0}/src/hexkit/__init__.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.2.0}/src/hexkit/__main__.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.2.0}/src/hexkit/base.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.2.0}/src/hexkit/config.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");
@@ -29,6 +29,8 @@ from pydantic_settings import (
 
 # Default config prefix:
 DEFAULT_CONFIG_PREFIX: Final = "ghga_services"
+# Default dotenv path:
+DEFAULT_DOTENV_PATH: Final[Path] = Path("/secrets")
 
 
 class ConfigYamlDoesNotExist(RuntimeError):
@@ -82,6 +84,7 @@ def get_default_config_yaml(prefix: str) -> Path | None:
 
 def config_from_yaml(
     prefix: str = DEFAULT_CONFIG_PREFIX,
+    dotenv_prefix: Path = DEFAULT_DOTENV_PATH,
 ) -> Callable:
     """A factory that returns decorator functions which extends a
     pydantic BaseSettings class to read in parameters from a config yaml.
@@ -102,21 +105,23 @@ def config_from_yaml(
             "{prefix}_{actual_variable_name}". Moreover, this prefix is used
             to derive the default location for the config yaml file
             ("~/.{prefix}.yaml"). Defaults to "ghga_services".
+        dotenv_prefix: (Path, optional):
+            When defining parameters via dotenv files, this prefix is used to set the path
+            for the dotenv files. The final path used is constructed as
+            "{dotenv_prefix}/.env". Defaults to "/secrets".
     """
 
     def decorator(settings) -> Callable:
-        # settings should be a pydantic BaseSetting,
-        # there is no type hint here to not restrict
-        # autocompletion for attributes of the
-        # modified settings class returned by the
-        # contructor_wrapper
         """The actual decorator function.
 
         Args
             settings (BaseSettings):
                 A pydantic BaseSettings class to be modified.
         """
-        # check if settings inherits from pydantic BaseSettings:
+        # The settings argument should be a pydantic BaseSetting,
+        # there is no type hint here to not restrict autocompletion for attributes
+        # of the modified settings class returned by the constructor_wrapper.
+        # Check if settings inherits from pydantic BaseSettings:
         if not issubclass(settings, BaseSettings):
             raise TypeError(
                 "The specified settings class is not a subclass of pydantic_settings.BaseSettings"
@@ -141,7 +146,12 @@ def config_from_yaml(
             class ModSettings(settings):
                 """Modifies the original Settings class provided by the user"""
 
-                model_config = SettingsConfigDict(frozen=True, env_prefix=f"{prefix}_")
+                model_config = SettingsConfigDict(
+                    frozen=True,
+                    env_prefix=f"{prefix}_",
+                    env_file=(".env", dotenv_prefix / ".env"),
+                    env_nested_delimiter="__",
+                )
 
                 @classmethod
                 def settings_customise_sources(
@@ -156,6 +166,7 @@ def config_from_yaml(
                     return (
                         init_settings,
                         env_settings,
+                        dotenv_settings,
                         file_secret_settings,
                         YamlConfigSettingsSource(settings_cls, config_yaml),
                     )

{hexkit-8.0.0 → hexkit-8.2.0}/src/hexkit/correlation.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.2.0}/src/hexkit/custom_types.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.2.0}/src/hexkit/log.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.2.0}/src/hexkit/opentelemetry.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.2.0}/src/hexkit/protocols/__init__.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.2.0}/src/hexkit/protocols/dao.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");
@@ -178,6 +178,9 @@ class Dao(typing.Protocol[Dto]):
         Raises:
             ResourceNotFoundError:
                 when resource with the id specified in the dto was not found
+            UniqueConstraintViolationError:
+                when updating the dto would violate a unique index constraint over some
+                field other than the ID field.
         """
         ...
 
@@ -250,6 +253,9 @@ class Dao(typing.Protocol[Dto]):
         Raises:
             ResourceAlreadyExistsError:
                 when a resource with the ID specified in the dto does already exist.
+            UniqueConstraintViolationError:
+                when inserting the dto would violate a unique index constraint over some
+                field other than the ID field.
         """
         ...
 
@@ -260,6 +266,11 @@ class Dao(typing.Protocol[Dto]):
             dto:
                 Resource content as a pydantic-based data transfer object including the
                 resource ID.
+
+        Raises:
+            UniqueConstraintViolationError:
+                when upserting the dto would violate a unique index constraint over some
+                field other than the ID field.
         """
         ...
 

{hexkit-8.0.0 → hexkit-8.2.0}/src/hexkit/protocols/daopub.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.2.0}/src/hexkit/protocols/daosub.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.2.0}/src/hexkit/protocols/eventpub.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.2.0}/src/hexkit/protocols/eventsub.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.2.0}/src/hexkit/protocols/kvstore.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.2.0}/src/hexkit/protocols/objstorage.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");
@@ -195,6 +195,38 @@ class ObjectStorageProtocol(ABC):
             bucket_id=bucket_id, object_id=object_id
         )
 
+    async def list_parts(
+        self,
+        *,
+        bucket_id: str,
+        object_id: str,
+        upload_id: str,
+        max_parts: int | None = None,
+        first_part_no: int | None = None,
+    ) -> list[dict]:
+        """Lists the parts that have been uploaded for a specific multipart upload.
+
+        Specify `max_parts` to return a limited parts list. If not specified, all
+        parts will be returned (up to 10,000).
+
+        Specify `first_part_no` to get parts starting with that part number. If not
+        specified, retrieved parts will start with the first part. Part numbers
+        start at 1, not 0.
+
+        Raises:
+            ValueError if `max_parts` or `first_part_no` are invalid.
+            MultiPartUploadNotFoundError if no upload with `upload_id` exists.
+        """
+        self._validate_bucket_id(bucket_id)
+        self._validate_object_id(object_id)
+        return await self._list_parts(
+            bucket_id=bucket_id,
+            object_id=object_id,
+            upload_id=upload_id,
+            max_parts=max_parts,
+            first_part_no=first_part_no,
+        )
+
     async def get_all_multipart_uploads(self, *, bucket_id: str) -> dict[str, str]:
         """Gets all active multipart uploads for the given bucket ID.
 
@@ -440,6 +472,31 @@ class ObjectStorageProtocol(ABC):
         """
         ...
 
+    @abstractmethod
+    async def _list_parts(
+        self,
+        *,
+        bucket_id: str,
+        object_id: str,
+        upload_id: str,
+        max_parts: int | None = None,
+        first_part_no: int | None = None,
+    ) -> list[dict]:
+        """Lists the parts that have been uploaded for a specific multipart upload.
+
+        Specify `max_parts` to return a limited parts list. If not specified, all
+        parts will be returned (up to 10,000).
+
+        Specify `first_part_no` to get parts starting with that part number. If not
+        specified, retrieved parts will start with the first part. Part numbers
+        start at 1, not 0.
+
+        Raises:
+            ValueError if `max_parts` or `first_part_no` are invalid.
+            MultiPartUploadNotFoundError if no upload with `upload_id` exists.
+        """
+        ...
+
     @abstractmethod
     async def _get_all_multipart_uploads(self, *, bucket_id: str) -> dict[str, str]:
         """Gets all active multipart uploads for the given bucket ID.

{hexkit-8.0.0 → hexkit-8.2.0}/src/hexkit/providers/__init__.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.2.0}/src/hexkit/providers/akafka/__init__.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.2.0}/src/hexkit/providers/akafka/config.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.2.0}/src/hexkit/providers/akafka/provider/__init__.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.2.0}/src/hexkit/providers/akafka/provider/daosub.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");
@@ -19,7 +19,7 @@
 """
 
 import logging
-from collections.abc import Sequence
+from collections.abc import AsyncGenerator, Sequence
 from contextlib import asynccontextmanager
 
 from aiokafka import AIOKafkaConsumer
@@ -57,7 +57,7 @@ class KafkaOutboxSubscriber(InboundProviderBase):
         translators: Sequence[DaoSubscriberProtocol],
         dlq_publisher: EventPublisherProtocol | None = None,
         kafka_consumer_cls: type[KafkaConsumerCompatible] = AIOKafkaConsumer,
-    ):
+    ) -> AsyncGenerator["KafkaOutboxSubscriber", None]:
         """Setup and teardown an instance of the provider.
 
         Args:

{hexkit-8.0.0 → hexkit-8.2.0}/src/hexkit/providers/akafka/provider/eventpub.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.2.0}/src/hexkit/providers/akafka/provider/eventsub.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");
@@ -331,9 +331,11 @@ class KafkaConsumerCompatible(Protocol):
                 An identifier for the consumer group.
             auto_offset_reset:
                 Can be set to "earliest".
-            key_serializer:
+            enable_auto_commit:
+                Whether to enable auto-committing of offsets.
+            key_deserializer:
                 Function to deserialize the keys into strings.
-            value_serializer:
+            value_deserializer:
                 Function to deserialize the values into strings.
             max_partition_fetch_bytes:
                 Maximum receivable message size

{hexkit-8.0.0 → hexkit-8.2.0}/src/hexkit/providers/akafka/provider/utils.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.2.0}/src/hexkit/providers/akafka/testcontainer.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.2.0}/src/hexkit/providers/akafka/testutils.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");
@@ -644,11 +644,11 @@ class KafkaContainerFixture(KafkaContainer):
         """Run the given command in the kafka testcontainer.
 
         Args:
-            - `command`: The full command to run.
-            - `run_in_shell`: If True, will run the command in a shell.
+            command: The full command to run.
+            run_in_shell: If True, will run the command in a shell.
 
         Raises:
-            - `RuntimeError`: when the exit code returned by the command is not zero.
+            RuntimeError: when the exit code returned by the command is not zero.
         """
         cmd = ["sh", "-c", command] if run_in_shell else command
         exit_code, output = self.get_wrapped_container().exec_run(cmd)

{hexkit-8.0.0 → hexkit-8.2.0}/src/hexkit/providers/mongodb/__init__.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.2.0}/src/hexkit/providers/mongodb/config.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.2.0}/src/hexkit/providers/mongodb/migrations/__init__.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.2.0}/src/hexkit/providers/mongodb/migrations/_manager.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.2.0}/src/hexkit/providers/mongodb/migrations/_utils.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");