hexkit 8.0.0__tar.gz → 8.1.0__tar.gz

{hexkit-8.0.0 → hexkit-8.1.0}/LICENSE

@@ -186,7 +186,7 @@
       same "printed page" as the copyright notice for easier
       identification within third-party archives.
 
-   Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+   Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
    for the German Human Genome-Phenome Archive (GHGA)
 
    Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0/src/hexkit.egg-info → hexkit-8.1.0}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: hexkit
-Version: 8.0.0
+Version: 8.1.0
 Summary: A Toolkit for Building Microservices using the Hexagonal Architecture
 Author-email: "German Human Genome Phenome Archive (GHGA)" <contact@ghga.de>
 License: Apache 2.0
@@ -29,7 +29,7 @@ Provides-Extra: s3
 Requires-Dist: boto3<2,>=1.42; extra == "s3"
 Requires-Dist: botocore<2,>=1.42; extra == "s3"
 Provides-Extra: mongodb
-Requires-Dist: pymongo<5,>=4.15; extra == "mongodb"
+Requires-Dist: pymongo<5,>=4.16; extra == "mongodb"
 Provides-Extra: redis
 Requires-Dist: redis<8,>=7.1; extra == "redis"
 Provides-Extra: opentelemetry-base
@@ -64,16 +64,16 @@ Requires-Dist: hexkit[opentelemetry-fastapi]; extra == "opentelemetry"
 Requires-Dist: hexkit[opentelemetry-s3]; extra == "opentelemetry"
 Provides-Extra: test-akafka
 Requires-Dist: hexkit[akafka]; extra == "test-akafka"
-Requires-Dist: testcontainers[kafka]<5,>=4.13; extra == "test-akafka"
+Requires-Dist: testcontainers[kafka]<5,>=4.14; extra == "test-akafka"
 Provides-Extra: test-s3
 Requires-Dist: hexkit[s3]; extra == "test-s3"
-Requires-Dist: testcontainers<5,>=4.13; extra == "test-s3"
+Requires-Dist: testcontainers<5,>=4.14; extra == "test-s3"
 Provides-Extra: test-mongodb
 Requires-Dist: hexkit[mongodb]; extra == "test-mongodb"
-Requires-Dist: testcontainers[mongo]<5,>=4.13; extra == "test-mongodb"
+Requires-Dist: testcontainers[mongo]<5,>=4.14; extra == "test-mongodb"
 Provides-Extra: test-redis
 Requires-Dist: hexkit[redis]; extra == "test-redis"
-Requires-Dist: testcontainers[redis]<5,>=4.13; extra == "test-redis"
+Requires-Dist: testcontainers[redis]<5,>=4.14; extra == "test-redis"
 Provides-Extra: test
 Requires-Dist: hexkit[test-akafka,test-mongodb,test-s3]; extra == "test"
 Provides-Extra: all

{hexkit-8.0.0 → hexkit-8.1.0}/pyproject.toml

@@ -23,7 +23,7 @@ classifiers = [
     "Intended Audience :: Developers",
 ]
 name = "hexkit"
-version = "8.0.0"
+version = "8.1.0"
 description = "A Toolkit for Building Microservices using the Hexagonal Architecture"
 dependencies = [
     "opentelemetry-api >=1.39, <2",
@@ -45,7 +45,7 @@ s3 = [
     "botocore >=1.42, <2",
 ]
 mongodb = [
-    "pymongo >=4.15, <5",
+    "pymongo >=4.16, <5",
 ]
 redis = [
     "redis >=7.1, <8",
@@ -89,19 +89,19 @@ opentelemetry = [
 ]
 test-akafka = [
     "hexkit[akafka]",
-    "testcontainers[kafka] >=4.13, <5",
+    "testcontainers[kafka] >=4.14, <5",
 ]
 test-s3 = [
     "hexkit[s3]",
-    "testcontainers >=4.13, <5",
+    "testcontainers >=4.14, <5",
 ]
 test-mongodb = [
     "hexkit[mongodb]",
-    "testcontainers[mongo] >=4.13, <5",
+    "testcontainers[mongo] >=4.14, <5",
 ]
 test-redis = [
     "hexkit[redis]",
-    "testcontainers[redis] >=4.13, <5",
+    "testcontainers[redis] >=4.14, <5",
 ]
 test = [
     "hexkit[test-akafka,test-s3,test-mongodb]",
@@ -251,6 +251,6 @@ legacy_tox_ini = """
     deps =
         --no-deps -r ./lock/requirements-dev.txt
     commands =
-        py310: pip install --no-deps backports.asyncio.runner==1.2.0 exceptiongroup==1.3.0 tomli==2.2.1
+        py310: pip install --no-deps backports.asyncio.runner==1.2.0 exceptiongroup==1.3.1 tomli==2.2.1
         pytest {posargs}
 """

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/__init__.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/__main__.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/base.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/config.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");
@@ -29,6 +29,8 @@ from pydantic_settings import (
 
 # Default config prefix:
 DEFAULT_CONFIG_PREFIX: Final = "ghga_services"
+# Default dotenv path:
+DEFAULT_DOTENV_PATH: Final[Path] = Path("/secrets")
 
 
 class ConfigYamlDoesNotExist(RuntimeError):
@@ -82,6 +84,7 @@ def get_default_config_yaml(prefix: str) -> Path | None:
 
 def config_from_yaml(
     prefix: str = DEFAULT_CONFIG_PREFIX,
+    dotenv_prefix: Path = DEFAULT_DOTENV_PATH,
 ) -> Callable:
     """A factory that returns decorator functions which extends a
     pydantic BaseSettings class to read in parameters from a config yaml.
@@ -102,6 +105,10 @@ def config_from_yaml(
             "{prefix}_{actual_variable_name}". Moreover, this prefix is used
             to derive the default location for the config yaml file
             ("~/.{prefix}.yaml"). Defaults to "ghga_services".
+        dotenv_prefix: (Path, optional):
+            When defining parameters via dotenv files, this prefix is used to set the path
+            for the dotenv files. The final path used is constructed as
+            "{dotenv_prefix}/.env". Defaults to "/secrets".
     """
 
     def decorator(settings) -> Callable:
@@ -141,7 +148,11 @@ def config_from_yaml(
             class ModSettings(settings):
                 """Modifies the original Settings class provided by the user"""
 
-                model_config = SettingsConfigDict(frozen=True, env_prefix=f"{prefix}_")
+                model_config = SettingsConfigDict(
+                    frozen=True,
+                    env_prefix=f"{prefix}_",
+                    env_file=(".env", dotenv_prefix / ".env"),
+                )
 
                 @classmethod
                 def settings_customise_sources(
@@ -156,6 +167,7 @@ def config_from_yaml(
                     return (
                         init_settings,
                         env_settings,
+                        dotenv_settings,
                         file_secret_settings,
                         YamlConfigSettingsSource(settings_cls, config_yaml),
                     )

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/correlation.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/custom_types.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/log.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/opentelemetry.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/protocols/__init__.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/protocols/dao.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");
@@ -178,6 +178,9 @@ class Dao(typing.Protocol[Dto]):
         Raises:
             ResourceNotFoundError:
                 when resource with the id specified in the dto was not found
+            UniqueConstraintViolationError:
+                when updating the dto would violate a unique index constraint over some
+                field other than the ID field.
         """
         ...
 
@@ -250,6 +253,9 @@ class Dao(typing.Protocol[Dto]):
         Raises:
             ResourceAlreadyExistsError:
                 when a resource with the ID specified in the dto does already exist.
+            UniqueConstraintViolationError:
+                when inserting the dto would violate a unique index constraint over some
+                field other than the ID field.
         """
         ...
 
@@ -260,6 +266,11 @@ class Dao(typing.Protocol[Dto]):
             dto:
                 Resource content as a pydantic-based data transfer object including the
                 resource ID.
+
+        Raises:
+            UniqueConstraintViolationError:
+                when upserting the dto would violate a unique index constraint over some
+                field other than the ID field.
         """
         ...
 

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/protocols/daopub.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/protocols/daosub.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/protocols/eventpub.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/protocols/eventsub.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/protocols/kvstore.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/protocols/objstorage.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/providers/__init__.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/providers/akafka/__init__.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/providers/akafka/config.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/providers/akafka/provider/__init__.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/providers/akafka/provider/daosub.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/providers/akafka/provider/eventpub.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/providers/akafka/provider/eventsub.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/providers/akafka/provider/utils.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/providers/akafka/testcontainer.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/providers/akafka/testutils.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/providers/mongodb/__init__.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/providers/mongodb/config.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/providers/mongodb/migrations/__init__.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/providers/mongodb/migrations/_manager.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/providers/mongodb/migrations/_utils.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/providers/mongodb/migrations/helpers.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/providers/mongodb/provider/__init__.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/providers/mongodb/provider/client.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/providers/mongodb/provider/dao.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");
@@ -243,12 +243,19 @@ class MongoDbDao(Generic[Dto]):
         Raises:
             ResourceNotFoundError:
                 when resource with the id specified in the dto was not found
+            UniqueConstraintViolationError:
+                when updating the dto would violate a unique index constraint over some
+                field other than the ID field.
         """
         document = self._dto_to_document(dto)
         with translate_pymongo_errors():
-            result = await self._collection.replace_one(
-                {"_id": document["_id"]}, document
-            )
+            try:
+                result = await self._collection.replace_one(
+                    {"_id": document["_id"]}, document
+                )
+            except DuplicateKeyError as error:
+                key_value = error.details.get("keyValue", {})  # type: ignore
+                raise UniqueConstraintViolationError(unique_fields=key_value) from error
 
         if result.matched_count == 0:
             raise ResourceNotFoundError(id_=document["_id"])
@@ -353,6 +360,9 @@ class MongoDbDao(Generic[Dto]):
         Raises:
             ResourceAlreadyExistsError:
                 when a resource with the ID specified in the dto does already exist.
+            UniqueConstraintViolationError:
+                when inserting the dto would violate a unique index constraint over some
+                field other than the ID field.
         """
         document = self._dto_to_document(dto)
         with translate_pymongo_errors():
@@ -373,12 +383,21 @@ class MongoDbDao(Generic[Dto]):
             dto:
                 Resource content as a pydantic-based data transfer object including the
                 resource ID.
+
+        Raises:
+            UniqueConstraintViolationError:
+                when upserting the dto would violate a unique index constraint over some
+                field other than the ID field.
         """
         document = self._dto_to_document(dto)
         with translate_pymongo_errors():
-            await self._collection.replace_one(
-                {"_id": document["_id"]}, document, upsert=True
-            )
+            try:
+                await self._collection.replace_one(
+                    {"_id": document["_id"]}, document, upsert=True
+                )
+            except DuplicateKeyError as error:
+                key_value = error.details.get("keyValue", {})  # type: ignore
+                raise UniqueConstraintViolationError(unique_fields=key_value) from error
 
 
 class MongoDbDaoFactory(DaoFactoryProtocol[MongoDbIndex]):

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/providers/mongodb/provider/kvstore.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/providers/mongodb/provider/utils.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/providers/mongodb/testutils.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/providers/mongokafka/__init__.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/providers/mongokafka/config.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/providers/mongokafka/provider/__init__.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/providers/mongokafka/provider/daopub.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");
@@ -28,10 +28,16 @@ from uuid import uuid4
 from aiokafka import AIOKafkaProducer
 from pymongo import AsyncMongoClient
 from pymongo.asynchronous.collection import AsyncCollection
+from pymongo.errors import DuplicateKeyError
 
 from hexkit.correlation import get_correlation_id, set_correlation_id
 from hexkit.custom_types import ID, JsonObject
-from hexkit.protocols.dao import Dao, Dto, ResourceNotFoundError
+from hexkit.protocols.dao import (
+    Dao,
+    Dto,
+    ResourceNotFoundError,
+    UniqueConstraintViolationError,
+)
 from hexkit.protocols.daopub import DaoPublisher, DaoPublisherFactoryProtocol
 from hexkit.protocols.eventpub import EventPublisherProtocol
 from hexkit.providers.akafka import KafkaEventPublisher
@@ -263,21 +269,29 @@ class MongoKafkaDaoPublisher(Generic[Dto]):
         Raises:
             ResourceNotFoundError:
                 when resource with the id specified in the dto was not found
+            UniqueConstraintViolationError:
+                when updating the dto would violate a unique index constraint over some
+                field other than the ID field.
         """
         correlation_id = get_correlation_id()
         document = self._dao._dto_to_document(dto)
         document.setdefault("__metadata__", {})["correlation_id"] = correlation_id
         with translate_pymongo_errors():
-            result = await self._collection.replace_one(
-                {
-                    "_id": document["_id"],
-                    "$or": [
-                        {"__metadata__": {"$exists": False}},
-                        {"__metadata__.deleted": False},
-                    ],
-                },
-                document,
-            )
+            try:
+                result = await self._collection.replace_one(
+                    {
+                        "_id": document["_id"],
+                        "$or": [
+                            {"__metadata__": {"$exists": False}},
+                            {"__metadata__.deleted": False},
+                        ],
+                    },
+                    document,
+                )
+            except DuplicateKeyError as error:
+                key_value = error.details.get("keyValue", {})  # type: ignore
+                raise UniqueConstraintViolationError(unique_fields=key_value) from error
+
         if result.matched_count == 0:
             raise ResourceNotFoundError(id_=document["_id"])
 
@@ -389,6 +403,9 @@ class MongoKafkaDaoPublisher(Generic[Dto]):
         Raises:
             ResourceAlreadyExistsError:
                 when a resource with the ID specified in the dto does already exist.
+            UniqueConstraintViolationError:
+                when inserting the dto would violate a unique index constraint over some
+                field other than the ID field.
         """
         await self._dao.insert(dto=dto)
 
@@ -402,8 +419,17 @@ class MongoKafkaDaoPublisher(Generic[Dto]):
             dto:
                 Resource content as a pydantic-based data transfer object including the
                 resource ID.
+
+        Raises:
+            UniqueConstraintViolationError:
+                when upserting the dto would violate a unique index constraint over some
+                field other than the ID field.
         """
-        await self._dao.upsert(dto=dto)
+        try:
+            await self._dao.upsert(dto=dto)
+        except DuplicateKeyError as error:
+            key_value = error.details.get("keyValue", {})  # type: ignore
+            raise UniqueConstraintViolationError(unique_fields=key_value) from error
         if self._autopublish:
             await self._publish_change(dto)
 

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/providers/mongokafka/provider/persistent_pub.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/providers/mongokafka/testutils.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/providers/redis/__init__.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/providers/redis/config.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/providers/redis/provider/__init__.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/providers/redis/provider/client.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/providers/redis/provider/kvstore.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/providers/redis/testutils.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/providers/s3/__init__.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/providers/s3/provider.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/providers/s3/test_files/__init__.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/providers/s3/testutils/__init__.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/providers/s3/testutils/_fixtures.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/providers/s3/testutils/_typical_workflow.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/providers/s3/testutils/_utils.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/providers/testing/__init__.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/providers/testing/dao.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/providers/testing/eventpub.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/providers/testing/s3.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit/utils.py

@@ -1,4 +1,4 @@
-# Copyright 2021 - 2025 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
+# Copyright 2021 - 2026 Universität Tübingen, DKFZ, EMBL, and Universität zu Köln
 # for the German Human Genome-Phenome Archive (GHGA)
 #
 # Licensed under the Apache License, Version 2.0 (the "License");

{hexkit-8.0.0 → hexkit-8.1.0/src/hexkit.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: hexkit
-Version: 8.0.0
+Version: 8.1.0
 Summary: A Toolkit for Building Microservices using the Hexagonal Architecture
 Author-email: "German Human Genome Phenome Archive (GHGA)" <contact@ghga.de>
 License: Apache 2.0
@@ -29,7 +29,7 @@ Provides-Extra: s3
 Requires-Dist: boto3<2,>=1.42; extra == "s3"
 Requires-Dist: botocore<2,>=1.42; extra == "s3"
 Provides-Extra: mongodb
-Requires-Dist: pymongo<5,>=4.15; extra == "mongodb"
+Requires-Dist: pymongo<5,>=4.16; extra == "mongodb"
 Provides-Extra: redis
 Requires-Dist: redis<8,>=7.1; extra == "redis"
 Provides-Extra: opentelemetry-base
@@ -64,16 +64,16 @@ Requires-Dist: hexkit[opentelemetry-fastapi]; extra == "opentelemetry"
 Requires-Dist: hexkit[opentelemetry-s3]; extra == "opentelemetry"
 Provides-Extra: test-akafka
 Requires-Dist: hexkit[akafka]; extra == "test-akafka"
-Requires-Dist: testcontainers[kafka]<5,>=4.13; extra == "test-akafka"
+Requires-Dist: testcontainers[kafka]<5,>=4.14; extra == "test-akafka"
 Provides-Extra: test-s3
 Requires-Dist: hexkit[s3]; extra == "test-s3"
-Requires-Dist: testcontainers<5,>=4.13; extra == "test-s3"
+Requires-Dist: testcontainers<5,>=4.14; extra == "test-s3"
 Provides-Extra: test-mongodb
 Requires-Dist: hexkit[mongodb]; extra == "test-mongodb"
-Requires-Dist: testcontainers[mongo]<5,>=4.13; extra == "test-mongodb"
+Requires-Dist: testcontainers[mongo]<5,>=4.14; extra == "test-mongodb"
 Provides-Extra: test-redis
 Requires-Dist: hexkit[redis]; extra == "test-redis"
-Requires-Dist: testcontainers[redis]<5,>=4.13; extra == "test-redis"
+Requires-Dist: testcontainers[redis]<5,>=4.14; extra == "test-redis"
 Provides-Extra: test
 Requires-Dist: hexkit[test-akafka,test-mongodb,test-s3]; extra == "test"
 Provides-Extra: all

{hexkit-8.0.0 → hexkit-8.1.0}/src/hexkit.egg-info/requires.txt

@@ -12,7 +12,7 @@ hexkit[test]
 hexkit[opentelemetry]
 
 [mongodb]
-pymongo<5,>=4.15
+pymongo<5,>=4.16
 
 [opentelemetry]
 hexkit[opentelemetry-akafka]
@@ -63,16 +63,16 @@ hexkit[test-akafka,test-mongodb,test-s3]
 
 [test-akafka]
 hexkit[akafka]
-testcontainers[kafka]<5,>=4.13
+testcontainers[kafka]<5,>=4.14
 
 [test-mongodb]
 hexkit[mongodb]
-testcontainers[mongo]<5,>=4.13
+testcontainers[mongo]<5,>=4.14
 
 [test-redis]
 hexkit[redis]
-testcontainers[redis]<5,>=4.13
+testcontainers[redis]<5,>=4.14
 
 [test-s3]
 hexkit[s3]
-testcontainers<5,>=4.13
+testcontainers<5,>=4.14