heurist-api 0.1.3__tar.gz → 0.1.4__tar.gz

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  1. {heurist_api-0.1.3 → heurist_api-0.1.4}/PKG-INFO +15 -1
  2. {heurist_api-0.1.3 → heurist_api-0.1.4}/README.md +17 -3
  3. {heurist_api-0.1.3 → heurist_api-0.1.4}/docs/index.md +3 -6
  4. {heurist_api-0.1.3 → heurist_api-0.1.4}/docs/usage/index.md +4 -7
  5. {heurist_api-0.1.3 → heurist_api-0.1.4}/mkdocs.yml +1 -1
  6. {heurist_api-0.1.3 → heurist_api-0.1.4}/pyproject.toml +2 -2
  7. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/database/database.py +2 -0
  8. {heurist_api-0.1.3 → heurist_api-0.1.4}/.github/workflows/pypi-release.yml +0 -0
  9. {heurist_api-0.1.3 → heurist_api-0.1.4}/.github/workflows/python-package.yml +0 -0
  10. {heurist_api-0.1.3 → heurist_api-0.1.4}/.gitignore +0 -0
  11. {heurist_api-0.1.3 → heurist_api-0.1.4}/.pre-commit-config.yaml +0 -0
  12. {heurist_api-0.1.3 → heurist_api-0.1.4}/LICENSE +0 -0
  13. {heurist_api-0.1.3 → heurist_api-0.1.4}/demos/pandas_dataframe.ipynb +0 -0
  14. {heurist_api-0.1.3 → heurist_api-0.1.4}/docs/assets/coverage-badge.svg +0 -0
  15. {heurist_api-0.1.3 → heurist_api-0.1.4}/docs/assets/erc-logo.png +0 -0
  16. {heurist_api-0.1.3 → heurist_api-0.1.4}/docs/assets/heurist-admin-panel-users.png +0 -0
  17. {heurist_api-0.1.3 → heurist_api-0.1.4}/docs/assets/logo-transparent-1.png +0 -0
  18. {heurist_api-0.1.3 → heurist_api-0.1.4}/docs/assets/logo-transparent.png +0 -0
  19. {heurist_api-0.1.3 → heurist_api-0.1.4}/docs/assets/logo.png +0 -0
  20. {heurist_api-0.1.3 → heurist_api-0.1.4}/docs/assets/tests-badge.svg +0 -0
  21. {heurist_api-0.1.3 → heurist_api-0.1.4}/docs/development/code_of_conduct.md +0 -0
  22. {heurist_api-0.1.3 → heurist_api-0.1.4}/docs/development/contributing.md +0 -0
  23. {heurist_api-0.1.3 → heurist_api-0.1.4}/docs/development/coverage.md +0 -0
  24. {heurist_api-0.1.3 → heurist_api-0.1.4}/docs/development/heuristdb/temporal.md +0 -0
  25. {heurist_api-0.1.3 → heurist_api-0.1.4}/docs/development/publishing.md +0 -0
  26. {heurist_api-0.1.3 → heurist_api-0.1.4}/docs/legal.md +0 -0
  27. {heurist_api-0.1.3 → heurist_api-0.1.4}/docs/usage/download/date_validation.md +0 -0
  28. {heurist_api-0.1.3 → heurist_api-0.1.4}/docs/usage/download/export_csv.md +0 -0
  29. {heurist_api-0.1.3 → heurist_api-0.1.4}/docs/usage/download/group_types.md +0 -0
  30. {heurist_api-0.1.3 → heurist_api-0.1.4}/docs/usage/download/index.md +0 -0
  31. {heurist_api-0.1.3 → heurist_api-0.1.4}/docs/usage/download/logs.md +0 -0
  32. {heurist_api-0.1.3 → heurist_api-0.1.4}/docs/usage/download/user_filter.md +0 -0
  33. {heurist_api-0.1.3 → heurist_api-0.1.4}/docs/usage/module.md +0 -0
  34. {heurist_api-0.1.3 → heurist_api-0.1.4}/docs/usage/records.md +0 -0
  35. {heurist_api-0.1.3 → heurist_api-0.1.4}/docs/usage/rstudio.md +0 -0
  36. {heurist_api-0.1.3 → heurist_api-0.1.4}/docs/usage/schema.md +0 -0
  37. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/__init__.py +0 -0
  38. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/api/__init__.py +0 -0
  39. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/api/client.py +0 -0
  40. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/api/connection.py +0 -0
  41. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/api/constants.py +0 -0
  42. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/api/credentials.py +0 -0
  43. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/api/exceptions.py +0 -0
  44. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/api/url_builder.py +0 -0
  45. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/api/utils.py +0 -0
  46. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/cli/__init__.py +0 -0
  47. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/cli/__main__.py +0 -0
  48. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/cli/load.py +0 -0
  49. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/cli/records.py +0 -0
  50. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/cli/schema.py +0 -0
  51. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/database/__init__.py +0 -0
  52. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/database/basedb.py +0 -0
  53. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/models/__init__.py +0 -0
  54. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/models/dynamic/__init__.py +0 -0
  55. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/models/dynamic/annotation.py +0 -0
  56. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/models/dynamic/create_model.py +0 -0
  57. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/models/dynamic/date.py +0 -0
  58. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/models/dynamic/type.py +0 -0
  59. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/models/structural/DetailTypes.py +0 -0
  60. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/models/structural/RecStructure.py +0 -0
  61. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/models/structural/RecTypeGroups.py +0 -0
  62. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/models/structural/RecTypes.py +0 -0
  63. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/models/structural/Terms.py +0 -0
  64. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/models/structural/__init__.py +0 -0
  65. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/models/structural/dty.py +0 -0
  66. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/models/structural/hml_structure.py +0 -0
  67. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/models/structural/rst.py +0 -0
  68. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/models/structural/rtg.py +0 -0
  69. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/models/structural/rty.py +0 -0
  70. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/models/structural/trm.py +0 -0
  71. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/models/structural/utils.py +0 -0
  72. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/schema/__init__.py +0 -0
  73. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/schema/models.py +0 -0
  74. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/schema/rel_to_dict.py +0 -0
  75. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/sql/__init__.py +0 -0
  76. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/sql/joinRecordTypeIDNameByGroupType.sql +0 -0
  77. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/sql/joinRecordTypeMetadata.sql +0 -0
  78. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/sql/selectRecordTypeSchema.sql +0 -0
  79. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/sql/sql_safety.py +0 -0
  80. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/utils/constants.py +0 -0
  81. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/utils/rel_to_dict_array.py +0 -0
  82. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/validators/__init__.py +0 -0
  83. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/validators/detail_validator.py +0 -0
  84. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/validators/exceptions.py +0 -0
  85. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/validators/parse_heurist_date.py +0 -0
  86. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/validators/record_validator.py +0 -0
  87. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/workflows/__init__.py +0 -0
  88. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/heurist/workflows/etl.py +0 -0
  89. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/mock_data/__init__.py +0 -0
  90. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/mock_data/blocktext/__init__.py +0 -0
  91. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/mock_data/blocktext/single.py +0 -0
  92. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/mock_data/date/__init__.py +0 -0
  93. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/mock_data/date/compound_repeated.py +0 -0
  94. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/mock_data/date/compound_single.py +0 -0
  95. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/mock_data/date/simple_single.py +0 -0
  96. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/mock_data/date/timestamp_repeated.py +0 -0
  97. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/mock_data/enum/__init__.py +0 -0
  98. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/mock_data/enum/repeated.py +0 -0
  99. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/mock_data/enum/single.py +0 -0
  100. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/mock_data/file/__init__.py +0 -0
  101. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/mock_data/file/single.py +0 -0
  102. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/mock_data/float/__init__.py +0 -0
  103. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/mock_data/float/single.py +0 -0
  104. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/mock_data/freetext/__init__.py +0 -0
  105. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/mock_data/freetext/single.py +0 -0
  106. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/mock_data/geo/__init__.py +0 -0
  107. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/mock_data/geo/single.py +0 -0
  108. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/mock_data/resource/__init__.py +0 -0
  109. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/mock_data/resource/repeated.py +0 -0
  110. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/mock_data/resource/single.py +0 -0
  111. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/scripts/gen_badges.sh +0 -0
  112. {heurist_api-0.1.3 → heurist_api-0.1.4}/src/scripts/gen_ref_pages.py +0 -0
  113. {heurist_api-0.1.3 → heurist_api-0.1.4}/tests/e2e/download_test.py +0 -0
  114. {heurist_api-0.1.3 → heurist_api-0.1.4}/tests/e2e/schema_test.py +0 -0
  115. {heurist_api-0.1.3 → heurist_api-0.1.4}/tests/integration/api/client_test.py +0 -0
  116. {heurist_api-0.1.3 → heurist_api-0.1.4}/tests/integration/api/connection_test.py +0 -0
  117. {heurist_api-0.1.3 → heurist_api-0.1.4}/tests/unit/database/database_test.py +0 -0
  118. {heurist_api-0.1.3 → heurist_api-0.1.4}/tests/unit/database/modeling_test.py +0 -0
  119. {heurist_api-0.1.3 → heurist_api-0.1.4}/tests/unit/database/skeleton_test.py +0 -0
  120. {heurist_api-0.1.3 → heurist_api-0.1.4}/tests/unit/schema/get_db_schema_test.py +0 -0
  121. {heurist_api-0.1.3 → heurist_api-0.1.4}/tests/unit/validators/detail_validation_test.py +0 -0
  122. {heurist_api-0.1.3 → heurist_api-0.1.4}/tests/unit/validators/repeated_enum_test.py +0 -0
  123. {heurist_api-0.1.3 → heurist_api-0.1.4}/uv.lock +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: heurist-api
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- Version: 0.1.3
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+ Version: 0.1.4
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  Dynamic: Description
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  Dynamic: Description-Content-Type
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  Summary: API wrapper and CLI for Heurist database.
@@ -451,3 +451,17 @@ Requires-Dist: python-dotenv>=1.1.0
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  Requires-Dist: requests>=2.32.3
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  Requires-Dist: rich>=14.0.0
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  Requires-Dist: tenacity>=9.1.2
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+ Provides-Extra: dev
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+ Requires-Dist: coverage>=7.8.0; extra == 'dev'
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+ Requires-Dist: genbadge[coverage]>=1.1.2; extra == 'dev'
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+ Requires-Dist: isort>=6.0.1; extra == 'dev'
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+ Requires-Dist: mkdocs-gen-files>=0.5.0; extra == 'dev'
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+ Requires-Dist: mkdocs-literate-nav>=0.6.2; extra == 'dev'
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+ Requires-Dist: mkdocs-material[imaging]>=9.6.14; extra == 'dev'
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+ Requires-Dist: mkdocs>=1.6.1; extra == 'dev'
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+ Requires-Dist: mkdocstrings-python>=1.16.10; extra == 'dev'
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+ Requires-Dist: pre-commit>=4.2.0; extra == 'dev'
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+ Requires-Dist: pymdown-extensions>=10.15; extra == 'dev'
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+ Requires-Dist: pytest>=8.3.5; extra == 'dev'
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+ Requires-Dist: ruff>=0.11.10; extra == 'dev'
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+ Requires-Dist: uv>=0.7.5; extra == 'dev'
@@ -8,11 +8,25 @@
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  Extract, transform, and load data from your Heurist database into local formats. Great for freeing up your data analysis pipeline!
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- ## Documentation
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+ ## Quick Start
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- For information about installation, usage, etc., navigate to the documentation site below:
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+ Install (Python version +3.10) with pip.
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- - [Documentation](https://lostma-erc.github.io/heurist-etl-pipeline/)
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+ ```shell
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+ pip install heurist-api
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+ ```
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+
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+ Download your record types in a [DuckDB](https://duckdb.org/) database file.
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+
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+ ```shell
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+ heurist -d 'YOUR.DATABASE' -u 'YOUR.LOGIN' -p 'YOUR.PASSWORD' download -f 'FILE.DB'
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+ ```
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+
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+ ## Full Documentation
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+
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+ For detailed information about installation, usage, etc., navigate to the documentation site below:
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+
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+ - [Documentation](https://lostma-erc.github.io/heurist-api/)
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  ## License
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@@ -1,10 +1,10 @@
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- # Heurist ETL
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+ # Heurist API
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  [![Python package](https://github.com/LostMa-ERC/heurist-etl-pipeline/actions/workflows/python-package.yml/badge.svg)](https://github.com/LostMa-ERC/heurist-etl-pipeline/actions/workflows/python-package.yml) [![License: CC BY-SA 4.0](https://img.shields.io/badge/License-CC_BY--SA_4.0-lightgrey.svg)](https://creativecommons.org/licenses/by-sa/4.0/)
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  [![coverage](https://github.com/LostMa-ERC/heurist-etl-pipeline/raw/main/docs/assets/coverage-badge.svg)](https://github.com/LostMa-ERC/heurist-etl-pipeline/raw/main/docs/assets/coverage-badge.svg)
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  [![tests](https://github.com/LostMa-ERC/heurist-etl-pipeline/raw/main/docs/assets/tests-badge.svg)](https://github.com/LostMa-ERC/heurist-etl-pipeline/raw/main/docs/assets/tests-badge.svg)
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- This Python package Extracts, Transforms, and Loads (ETL) data from a Heurist database server into a local [DuckDB](https://duckdb.org) database file.
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+ This Python package provides an API wrapper for Heurist as well as a command-line interface (CLI) that Extracts, Transforms, and Loads (ETL) data from a Heurist database server into a local [DuckDB](https://duckdb.org) database file.
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  - [Installation & configuration](usage/index.md#installation)
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  - [Basic command-line usage](usage/index.md#cli-commands)
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  [![Logo](https://github.com/LostMa-ERC/heurist-etl-pipeline/raw/main/docs/assets/logo-transparent-1.png)](https://github.com/LostMa-ERC/heurist-etl-pipeline/raw/main/docs/assets/logo-transparent-1.png)
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  ```shell
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- $ pip install \
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- --index-url https://test.pypi.org/simple/ \
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- --extra-index-url https://pypi.org/simple \
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- heurist
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+ $ pip install heurist-api
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  ```
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  ## Commands
@@ -9,7 +9,7 @@ Secondarily, you can also exploit certain modules, such as the API client, for y
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  ### Requirements
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  - Python version 3.10 or greater
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- - Virtual Python environment, i.e. [`pyenv`](https://github.com/pyenv/pyenv?tab=readme-ov-file#installation).
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+ - A way to manage your virtual Python environment, i.e. [`pyenv`](https://github.com/pyenv/pyenv?tab=readme-ov-file#installation).
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  ### Steps
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@@ -17,14 +17,11 @@ Secondarily, you can also exploit certain modules, such as the API client, for y
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  - Need help installing Python? Check out the [Real Python](https://realpython.com/installing-python/) blog's tutorial.
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  2. Create a new virtual environment for the package. Then activate it.
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  - What's the simplest way? Check out [Real Python](https://realpython.com/python-virtual-environments-a-primer/)'s thorough blog post.
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- - I recommend naming the environment `heurist`.
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- 3. Use `pip install` to install the `heurist` Python package.
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+ - I recommend naming the environment `heurist-api`.
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+ 3. Use `pip install` to install the `heurist-api` Python package.
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  ```console
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- $ pip install \
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- --index-url https://test.pypi.org/simple/ \
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- --extra-index-url https://pypi.org/simple \
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- heurist
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+ $ pip install heurist-api
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  ```
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  ## Configure the CLI
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- site_name: Heurist ETL
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+ site_name: Heurist API
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  site_url: https://lostma-erc.github.io/heurist-api/
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  theme:
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  [project]
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  name = "heurist-api"
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- version = "0.1.3"
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+ version = "0.1.4"
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  description = "API wrapper and CLI for Heurist database."
5
5
  keywords = [ "duckdb", "etl" ]
6
6
  dynamic = [ "readme" ]
@@ -37,7 +37,7 @@ build-backend = "hatchling.build"
37
37
  [tool.hatch.build.targets.wheel]
38
38
  packages = ["src/heurist", "src/mock_data"]
39
39
 
40
- [dependency-groups]
40
+ [project.optional-dependencies]
41
41
  dev = [
42
42
  "coverage>=7.8.0",
43
43
  "genbadge[coverage]>=1.1.2",
@@ -20,6 +20,8 @@ class TransformedDatabase(HeuristDatabase):
20
20
  ) -> None:
21
21
  super().__init__(hml_xml, conn, db)
22
22
 
23
+ self.conn.execute("SET GLOBAL pandas_analyze_sample=100000")
24
+
23
25
  # Create an empty index of targeted record types' Pydantic models
24
26
  self.pydantic_models = {}
25
27
 
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