hdf5plugin 4.2.0__tar.gz → 4.3.0__tar.gz

hdf5plugin-4.3.0/CHANGELOG.rst

@@ -0,0 +1,311 @@
+4.3.0: 09/11/2023
+-----------------
+
+- Updated **hdf5-blosc2** to support b2nd (PR #282)
+- Updated **c-blosc2** (v2.11.1) and enabled its AVX512 support (PR #283)
+
+- Updated continuous integration to test with Python 3.12 (PR #281)
+- Added European HDF Users Group (HUG) Meeting 2023 presentation and companion material (PR #280)
+- Updated documentation (PR #279, #284)
+
+4.2.0: 12/09/2023
+-----------------
+
+- Updated libraries: **c-blosc** (v1.12.5), **c-blosc2** (v2.10.2) (PR #273)
+- Updated filter **H5Z-ZFP** (v1.1.1) (PR #273)
+
+- Updated build dependencies:
+
+  * Added `wheel`>=0.34.0 requirement (PR #272)
+  * Removed `distutils` usage (PR #276)
+
+- Updated documentation (PR #271, #278)
+- Fixed Continuous integration (PR #275)
+- Debian packaging (PR #277):
+
+  * Added Debian 12
+  * Removed Debian 10
+
+4.1.3: 16/06/2023
+-----------------
+
+This is a bug fix release:
+
+- Fixed **SZ** compression filter build option that was leading to errors higher than the required tolerance (PR #268, #269)
+
+4.1.2: 01/06/2023
+-----------------
+
+- Updated libraries: **c-blosc** (v1.12.4), **c-blosc2** (v2.9.2), snappy (v1.1.10) **zstd** (v1.5.5), **zlib** (v1.2.13) (PR #266)
+- Updated filter registration (PR #264)
+
+4.1.1: 23/01/2023
+-----------------
+
+This is a bug fix release:
+
+- Fixed **c-blosc2** compilation on ARM architecture (PR #262)
+- Updated continuous integration tests (PR #261)
+
+4.1.0: 17/01/2023
+-----------------
+
+This version of ``hdf5plugin`` provides 2 new filters: **Blosc2** and **SZ3**.
+
+- New compression filters:
+
+  * Added **SZ3** filter (PR #224, #241, #242, #243, #246)
+  * Added **Blosc2** filter (PR #201, #249, #253, #255)
+
+- Updated filters:
+
+  * Updated **bitshuffle** (v0.5.1) (PR #251)
+  * Updated **c-blosc** (v1.21.2) and **LZ4** compression library (v1.9.4) (PR #250)
+
+- Build:
+
+  * Added build configuration environment variables:
+
+    * ``HDF5PLUGIN_CPP14`` for SZ3 (PR #242)
+    * ``HDF5PLUGIN_BMI2`` for Zstd compression library (PR #247)
+    * ``HDF5PLUGIN_INTEL_IPP_DIR`` for Blosc2 filter and LZ4 compression library (PR #252)
+
+  * Added Intel IPP optional support for LZ4 compression (PR #252)
+  * Refactored build (PR #233, #240, #248, #255, #257)
+
+- Misc.:
+
+  * Updated documentation (PR #256, #259)
+
+4.0.1: 2022/12/06
+-----------------
+
+This is a bug-fix release:
+
+- Updated embedded version of `SZ` to fix a compression issue under Windows (PR #231)
+- Updated tests to pass with older versions of `bitshuffle` (PR #235)
+- Improved HDF5 function wrapper (PR #228)
+- Fixed and updated documentation (PR #223, #232, #238)
+
+4.0.0: 2022/11/28
+-----------------
+
+This version of ``hdf5plugin`` requires at least Python >= v3.7 (PR #210).
+
+While the provided plugin filters are backwards compatible, this version includes an updated version of the H5Z-ZFP filter (v1.1.0). This version of the filter can read data compressed by previous versions but newly ZFP-compressed data cannot be read by older versions (PR #190). 
+
+- New compression filters:
+
+  * Added **SZ** filter (PR #203, #206, #209, #213, #215)
+  * Added **BZip2** filter (PR #182)
+
+- New functions:
+
+  * Added **get_config()** function to retrieve build information and currently registered filters (PR #187)
+  * Added **get_filters()** function to retrieve selected compression filter helper class (PR #212)
+  * Added **register()** function to force registration of provided filters (PR #208, #212)
+
+- Deprecations:
+
+  * ``Bitshuffle``'s ``lz4`` argument: Use ``cname`` argument instead (PR #171)
+  * ``config``: use ``get_config()`` function instead (PR #210)
+  * ``date``, ``hexversion`` and ``strictversion`` (PR #217)
+
+- Updated filters:
+
+  * Updated ``snappy`` library to v1.1.9 (used by the ``blosc`` filter) (PR #192)
+  * Updated ``Zfp`` filter to HZ5-ZFP v1.1.0 and ZFP v1.0.0 (PR #190)
+  * Updated ``Bitshuffle`` filter to v0.4.2 (PR #171)
+  * Updated ``c-blosc`` to commit 9dc93b1 and ``zstd`` to v1.5.2 (PR #200)
+
+- Build:
+
+  * Updated ``HDF5PLUGIN_STRIP`` environment variable behaviour and added support for ``"all"`` value (PR #188)
+  * Added optimisation flags for the ``blosc`` filter compilation (PR #180)
+  * Added check of native flags availability (PR #189)
+
+- Misc.:
+
+  * Updated project to use Python >3.7 (PR #210)
+  * Code reorganisation, clean-up, code style (PR #191, #205, #217)
+  * Updated documentation (PR #184, #196, #199, #211, #218)
+  * Updated continuous integration tests (PR #198)
+
+3.3.1: 2022/06/03
+-----------------
+
+- Fixed LZ4 filter compilation with `HDF5PLUGIN_HDF5_DIR` (PR #178)
+- Renamed `PLUGINS_PATH` constant to `PLUGIN_PATH` without `S` (PR #179)
+- Added notebook of European HUG meeting 2022 (PR #176)
+- Updated changelog and version (PR #181)
+
+3.3.0: 2022/05/25
+-----------------
+
+- Deprecated build options passed as arguments to `setup.py`, use environment variables instead (PR #167)
+- Updated LZ4 filter to latest available code and LZ4 compression v1.9.3 (PR #172)
+- Added `clevel` argument to `Zstd` (PR #164)
+- Added `config.embedded_filters` to advertise embedded filters, and `HDF5PLUGIN_STRIP` to configure it during the build (PR #169)
+- Added `-v` option to `python -m hdf5plugin.test` (PR #166)
+- Changed "filter already loaded, skip it." log message from warning to info (PR #168)
+- Updated build, now using `pyproject.toml` (PR #167, #173)
+- Updated changelog and version (PR #174)
+
+3.2.0: 2021/10/15
+-----------------
+
+- Updated libraries: blosc v1.21.1 (lz4 v1.9.3, zlib v1.2.11, zstd v1.5.0), snappy v1.1.8 (PR #152, #156)
+- Fixed compilation issue occuring on ppc64le in conda-forge (PR #154)
+- Documentation: Added European HDF User Group presentation (PR #150) and updated changelog (PR #155)
+
+3.1.1: 2021/07/07
+-----------------
+
+This is a bug fix release:
+
+- Fixed `hdf5plugin` when installed as a Debian/Ubuntu package (PR #147)
+- Fixed and updated documentation (PR #143, #148)
+
+3.1.0: 2021/07/02
+-----------------
+
+This version of `hdf5plugin` requires Python3 adds `mips64` supports and improves support for other architectures.
+
+- Added support of `mips64` architecture (PR #126)
+- Added enhanced documentation based on sphinx hosted at http://www.silx.org/doc/hdf5plugin/latest/ and on readthedocs.org (PR #137, #139, #141)
+- Fixed LZ4 filter by downgrading used lz4 algorithm implementation (PR #123)
+- Fixed `python setup.py install` (PR #125, #130)
+- Improved build options support (PR #125, #130, #135, #140)
+- Improved tests (PR #128, #129, #132)
+- Cleaned-up python2 compatibility code (PR #134)
+- Updated project description/metadata: Added Python3.9, `python_requires`, updated status to "Stable" (PR #119, #127, #138)
+- Updated CHANGELOG and version (PR #142)
+
+3.0.0
+-----
+
+This version of `hdf5plugin` requires Python3 and supports arm64 architecture.
+
+- Stopped Python2.7 support (PR #104, #105)
+- Added support of arm64 architecture (PR #116)
+- Added `Zstd` filter to the supported plugin list (PR #106)
+- Added `hdf5plugin.config` to retrieve build options at runtime (PR #113)
+- Added support of build configuration through environment variables (PR #116)
+- Fixed `FciDecomp` error message when built without c++11 (PR #113)
+- Updated blosc compile flags (`-std-c99`) to build for manylinux1 (PR #109)
+- Updated c-blosc to v1.20.1 (PR #101)
+- Updated: continuous integration (PR #104, #111), project structure (PR #114, #118), changelog (PR #117)
+
+2.3.2
+-----
+
+This is the last version of `hdf5plugin` supporting Python 2.7.
+
+- Enabled SIMD on power9 for bitshuffle filter (PR #90)
+- Added github actions continous intergration (PR #99)
+- Added debian/ubuntu packaging support (PR #87)
+- Fixed compilation under macos10.15 with Python 3.8 (PR #102)
+- Fixed `numpy` 1.20 deprecation warning (PR #97)
+- Updated CHANGELOG and version (PR #91, #103)
+
+2.3.1
+-----
+
+- Fixed support of wheel package version >= 0.35 (PR #82)
+- Fixed typo in error log (PR #81)
+- Continuous integration: Added check of package description (PR #80)
+- Fixed handling of version info (PR #84)
+
+2.3
+---
+
+- Added ZFP filter (PR #74, #77)
+- Updated README (PR #76, #79)
+
+2.2
+---
+
+- Added FCIDECOMP filter (PR #68, #71)
+
+2.1.2
+-----
+
+- Fixed OpenMP compilation flag (PR #64)
+- Fixed support of `wheel` package version >= 0.34 (PR #64)
+- Continuous Integration: Run tests with python3 on macOS rather than python2. (PR #66)
+
+2.1.1
+-----
+
+- Fixed `--native` build option on platform other than x86_64 (PR #62)
+- Fixed build of the snappy C++11 library for blosc on macOS (PR #60)
+
+2.1.0
+-----
+
+- Added `--openmp=[False|True]` build option to compile bitshuffle filter with OpenMP. (PR #51)
+- Added `--sse2=[True|False]` build option to compile blosc and bitshuffle filters with SSE2 instructions if available. (PR #52)
+- Added `--avx2=[True|False]` build option to compile blosc and bitshuffle filters with AVX2 instructions if available. (PR #52)
+- Added `--native=[True|False]` build option to compile filters for native CPU architecture. This enables SSE2/AVX2 support for the bitshuffle filter if available. (PR #52)
+- Added snappy compression to the blosc filter if C++11 is available (`--cpp11=[True|False]` build option). (PR #54)
+- Improved wheel generation by using root_is_pure=True setting. (PR #49)
+
+2.0.0
+-----
+
+- Added compression support for Linux and macOS
+- Added blosc filter
+- Added helper class (Blosc, Bitshuffle and LZ4) to ease providing compression arguments to h5py
+- Added tests
+- Updated documentation
+- Building from source through setup.py
+- No longer use the plugin mechanism via HDF5_PLUGIN_PATH environment variable
+
+1.4.1
+-----
+
+- Support Python 3.7 under 64-bit windows
+
+1.4.0
+-----
+
+- Manylinux support
+
+1.3.1
+-----
+
+- Support Python 3.6 under 64-bit windows.
+
+1.3.0
+-----
+
+- Add 64-bit manylinux version LZ4 filter plugin
+
+- Add 64-bit manylinux version bitshuffle plugin
+
+- Implement continuous imtegration testing
+
+
+1.2.0
+-----
+
+- Add LZ4 filter plugin for MacOS
+
+- Add bitshuffle plugin decompressor for MacOS
+
+1.1.0
+-----
+
+- Add bitshuffle plugin.
+
+- Document origin and license of the used sources.
+
+1.0.1
+-----
+
+- Replace corrupted VS2015 64 bit dll.
+
+1.0.0
+-----
+
+- Initial release with LZ4 filter plugin.

hdf5plugin-4.3.0/PKG-INFO

@@ -0,0 +1,73 @@
+Metadata-Version: 2.1
+Name: hdf5plugin
+Version: 4.3.0
+Summary: HDF5 Plugins for Windows, MacOS, and Linux
+Home-page: https://github.com/silx-kit/hdf5plugin
+Author: ESRF - Data Analysis Unit
+Author-email: silx@esrf.fr
+License: https://github.com/silx-kit/hdf5plugin/blob/master/LICENSE
+Classifier: Development Status :: 5 - Production/Stable
+Classifier: Environment :: Console
+Classifier: Environment :: MacOS X
+Classifier: Environment :: Win32 (MS Windows)
+Classifier: Intended Audience :: Education
+Classifier: Intended Audience :: Science/Research
+Classifier: License :: OSI Approved :: MIT License
+Classifier: License :: OSI Approved :: BSD License
+Classifier: License :: OSI Approved :: zlib/libpng License
+Classifier: Natural Language :: English
+Classifier: Operating System :: POSIX :: Linux
+Classifier: Operating System :: MacOS
+Classifier: Operating System :: Microsoft :: Windows
+Classifier: Programming Language :: Python :: 3
+Classifier: Topic :: Software Development :: Libraries :: Python Modules
+Requires-Python: >=3.7
+License-File: LICENSE
+Requires-Dist: h5py
+Provides-Extra: dev
+Requires-Dist: sphinx; extra == "dev"
+Requires-Dist: sphinx_rtd_theme; extra == "dev"
+
+hdf5plugin
+==========
+
+.. image:: https://zenodo.org/badge/DOI/10.5281/zenodo.7257761.svg
+   :target: https://doi.org/10.5281/zenodo.7257761
+
+*hdf5plugin* provides `HDF5 compression filters <https://portal.hdfgroup.org/display/support/Registered+Filter+Plugins>`_ (namely: Blosc, Blosc2, BitShuffle, BZip2, FciDecomp, LZ4, SZ, SZ3, Zfp, ZStd) and makes them usable from `h5py <https://www.h5py.org>`_.
+
+See `documentation <http://www.silx.org/doc/hdf5plugin/latest/>`_.
+
+Installation
+------------
+
+To install, run::
+
+     pip install hdf5plugin [--user]
+     
+or, with conda (https://anaconda.org/conda-forge/hdf5plugin)::
+
+    conda install -c conda-forge hdf5plugin
+
+To install from source and recompile the HDF5 plugins, run::
+
+     pip install hdf5plugin --no-binary hdf5plugin [--user]
+
+Installing from source can achieve better performances by enabling AVX2 and OpenMP if available.
+
+For more details, see the `installation documentation <http://www.silx.org/doc/hdf5plugin/latest/install.html>`_.
+
+How-to use
+----------
+
+To use it, just use ``import hdf5plugin`` and supported compression filters are available from `h5py <https://www.h5py.org>`_.
+
+For details, see `Usage documentation <http://www.silx.org/doc/hdf5plugin/latest/usage.html>`_.
+
+License
+-------
+
+The source code of *hdf5plugin* itself is licensed under the `MIT license <LICENSE>`_.
+
+Embedded HDF5 compression filters are licensed under different open-source licenses:
+see the `license documentation <http://www.silx.org/doc/hdf5plugin/latest/information.html#license>`_.

hdf5plugin-4.3.0/appveyor.yml

@@ -0,0 +1,71 @@
+os:
+    - Visual Studio 2019
+
+cache:
+    - '%LOCALAPPDATA%\pip\Cache'
+
+# fetch repository as zip archive
+shallow_clone: true
+
+environment:
+    global:
+        WIN_SDK_ROOT: "C:\\Program Files\\Microsoft SDKs\\Windows"
+
+    matrix:
+        # Python 3.12
+        - BUILD_PY_PATH: "C:\\Python312-x64;C:\\Python312-x64\\Scripts"
+          TEST_PY_PATH: "C:\\Python312-x64;C:\\Python312-x64\\Scripts"
+          INSTALL_CMD: "python -m pip install --upgrade --pre"
+          H5PY_OLDER_VERSION: "3.10.0"
+
+        # Miniconda37
+        - BUILD_PY_PATH: "C:\\Python37-x64;C:\\Python37-x64\\Scripts"
+          TEST_PY_PATH: "C:\\Miniconda37-x64;C:\\Miniconda37-x64\\Library\\mingw-w64\\bin;C:\\Miniconda37-x64\\Library\\usr\\bin;C:\\Miniconda37-x64\\Library\\bin;C:\\Miniconda37-x64\\Scripts;C:\\Miniconda37-x64\\bin;C:\\Miniconda37-x64\\condabin"
+          INSTALL_CMD: "conda install -y"
+          H5PY_OLDER_VERSION: "2.8.0"
+
+
+install:
+    # Add Build Python to PATH
+    - "SET OLD_PATH=%PATH%"
+    - "SET PATH=%BUILD_PY_PATH%;%OLD_PATH%"
+
+    # Upgrade distribution modules and dependencies
+    - "python -m pip install --upgrade pip setuptools wheel h5py"
+
+    # Print Python info
+    - "python ci\\info_platform.py"
+    - "pip freeze"
+
+
+build_script:
+    - "python setup.py bdist_wheel"
+    - ps: "ls dist"
+
+
+test_script:
+    # Add Test Python to PATH
+    - "SET PATH=%TEST_PY_PATH%;%OLD_PATH%"
+
+    # Install dependencies
+    - "%INSTALL_CMD% h5py"
+
+    # Install the generated wheel package to test it
+    # Make sure it does not come from cache or pypi
+    # At this point all install_requires dependencies MUST be installed
+    # as this is installing only from dist/
+    - "pip install --pre --find-links dist/ --no-cache-dir --no-index hdf5plugin"
+
+    # Test with latest h5py
+    - "pip freeze"
+    - "python test\\test.py"
+
+    # Test with oldest available wheel of h5py
+    - "%INSTALL_CMD% h5py==%H5PY_OLDER_VERSION%"
+    - "pip freeze"
+    - "python test\\test.py"
+
+
+artifacts:
+    # Archive the generated wheel package in the ci.appveyor.com build report.
+    - path: dist\*