haplohub-cli 3.2.1__tar.gz → 3.2.2__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (92) hide show
  1. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/.github/workflows/on_pr.yml +1 -1
  2. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/.github/workflows/on_push_main.yml +1 -1
  3. {haplohub_cli-3.2.1/haplohub_cli.egg-info → haplohub_cli-3.2.2}/PKG-INFO +2 -1
  4. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/_version.py +3 -3
  5. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/core/api/client.py +3 -0
  6. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2/haplohub_cli.egg-info}/PKG-INFO +2 -1
  7. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli.egg-info/requires.txt +1 -0
  8. haplohub_cli-3.2.2/haplohub_cli.egg-info/scm_version.json +8 -0
  9. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/pyproject.toml +1 -0
  10. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/uv.lock +404 -402
  11. haplohub_cli-3.2.1/haplohub_cli.egg-info/scm_version.json +0 -8
  12. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/.github/dependabot.yml +0 -0
  13. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/.gitignore +0 -0
  14. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/.pre-commit-config.yaml +0 -0
  15. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/AGENTS.md +0 -0
  16. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/CLAUDE.md +0 -0
  17. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/README.md +0 -0
  18. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/docs/index.md +0 -0
  19. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/docs/release.md +0 -0
  20. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/docs/sdk-coupling.md +0 -0
  21. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/docs/stage-verification.md +0 -0
  22. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/docs/testing.md +0 -0
  23. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/__init__.py +0 -0
  24. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/auth/__init__.py +0 -0
  25. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/auth/auth.py +0 -0
  26. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/auth/auth_web_server.py +0 -0
  27. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/auth/oauth_client.py +0 -0
  28. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/auth/tests/__init__.py +0 -0
  29. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/auth/tests/test_auth_web_server.py +0 -0
  30. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/auth/tests/test_token_storage.py +0 -0
  31. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/auth/token_storage.py +0 -0
  32. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/cli.py +0 -0
  33. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/commands/__init__.py +0 -0
  34. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/commands/algorithm/__init__.py +0 -0
  35. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/commands/algorithm/result/__init__.py +0 -0
  36. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/commands/algorithm/tests/__init__.py +0 -0
  37. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/commands/algorithm/tests/test_result_create.py +0 -0
  38. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/commands/cohort/__init__.py +0 -0
  39. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/commands/cohort/biomarker.py +0 -0
  40. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/commands/cohort/member/__init__.py +0 -0
  41. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/commands/cohort/member/report.py +0 -0
  42. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/commands/cohort/sample.py +0 -0
  43. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/commands/cohort/tests/__init__.py +0 -0
  44. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/commands/cohort/tests/test_delete.py +0 -0
  45. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/commands/config.py +0 -0
  46. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/commands/file.py +0 -0
  47. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/commands/login.py +0 -0
  48. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/commands/metadata/__init__.py +0 -0
  49. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/commands/tests/__init__.py +0 -0
  50. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/commands/tests/test_file.py +0 -0
  51. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/commands/variant.py +0 -0
  52. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/commands/version.py +0 -0
  53. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/config/__init__.py +0 -0
  54. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/config/config.py +0 -0
  55. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/config/config_manager.py +0 -0
  56. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/core/__init__.py +0 -0
  57. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/core/api/__init__.py +0 -0
  58. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/core/checksum.py +0 -0
  59. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/core/deletion.py +0 -0
  60. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/core/network.py +0 -0
  61. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/core/slug.py +0 -0
  62. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/core/tests/__init__.py +0 -0
  63. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/core/tests/test_checksum.py +0 -0
  64. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/core/tests/test_network.py +0 -0
  65. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/core/tests/test_slug.py +0 -0
  66. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/core/types.py +0 -0
  67. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/core/upload.py +0 -0
  68. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/formatters/__init__.py +0 -0
  69. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/formatters/algorithm.py +0 -0
  70. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/formatters/algorithm_result.py +0 -0
  71. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/formatters/biomarker.py +0 -0
  72. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/formatters/config.py +0 -0
  73. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/formatters/decorators.py +0 -0
  74. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/formatters/file.py +0 -0
  75. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/formatters/formatter_registry.py +0 -0
  76. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/formatters/generic.py +0 -0
  77. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/formatters/generic_table.py +0 -0
  78. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/formatters/tests/__init__.py +0 -0
  79. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/formatters/tests/test_generic_table.py +0 -0
  80. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/formatters/utils.py +0 -0
  81. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/formatters/variant.py +0 -0
  82. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/settings.py +0 -0
  83. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/tests/__init__.py +0 -0
  84. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/tests/test_cli.py +0 -0
  85. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/types/__init__.py +0 -0
  86. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli/types/variant_range.py +0 -0
  87. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli.egg-info/SOURCES.txt +0 -0
  88. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli.egg-info/dependency_links.txt +0 -0
  89. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli.egg-info/entry_points.txt +0 -0
  90. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli.egg-info/scm_file_list.json +0 -0
  91. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/haplohub_cli.egg-info/top_level.txt +0 -0
  92. {haplohub_cli-3.2.1 → haplohub_cli-3.2.2}/setup.cfg +0 -0
@@ -13,7 +13,7 @@ jobs:
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  python-version: ["3.10", "3.11", "3.12", "3.13"]
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  steps:
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- - uses: actions/checkout@v6
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+ - uses: actions/checkout@v7
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  - uses: astral-sh/setup-uv@v7
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  with:
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  python-version: ${{ matrix.python-version }}
@@ -15,7 +15,7 @@ jobs:
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  name: Build python package
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  runs-on: ubuntu-latest
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  steps:
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- - uses: actions/checkout@v6
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+ - uses: actions/checkout@v7
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  with:
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  fetch-depth: 0
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  - uses: hynek/build-and-inspect-python-package@v2
@@ -1,10 +1,11 @@
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  Metadata-Version: 2.4
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  Name: haplohub-cli
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- Version: 3.2.1
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+ Version: 3.2.2
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  Summary: HaploHub Command Line Interface
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  Author-email: Mike Polcari <mike@haplotype-labs.com>, Ilya Khrustalev <ilya@haplotype-labs.com>
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  Requires-Python: >=3.10
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  Description-Content-Type: text/markdown
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+ Requires-Dist: certifi>=2026.10.19
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  Requires-Dist: click>=8.1.8
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  Requires-Dist: haplohub<4,>=3.1.0
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  Requires-Dist: pendulum>=3.0.0
@@ -18,7 +18,7 @@ version_tuple: tuple[int | str, ...]
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  commit_id: str | None
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  __commit_id__: str | None
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- __version__ = version = '3.2.1'
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- __version_tuple__ = version_tuple = (3, 2, 1)
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+ __version__ = version = '3.2.2'
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+ __version_tuple__ = version_tuple = (3, 2, 2)
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- __commit_id__ = commit_id = 'g3cb30f685'
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+ __commit_id__ = commit_id = 'g9bab1d8f9'
@@ -1,5 +1,6 @@
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  from functools import cached_property
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+ import certifi
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  import click
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  from haplohub import ApiClient, Configuration
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@@ -22,11 +23,13 @@ class Client:
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  config = Configuration(
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  host=api_url,
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  api_key={"ApiKeyAuth": self.token_storage.get_api_key(api_url)},
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+ ssl_ca_cert=certifi.where(),
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  )
26
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  else:
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  config = Configuration(
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  host=api_url,
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  access_token=self.token_storage.get_access_token(api_url),
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+ ssl_ca_cert=certifi.where(),
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  )
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  return ApiClient(config)
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@@ -1,10 +1,11 @@
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  Metadata-Version: 2.4
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  Name: haplohub-cli
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- Version: 3.2.1
3
+ Version: 3.2.2
4
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  Summary: HaploHub Command Line Interface
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  Author-email: Mike Polcari <mike@haplotype-labs.com>, Ilya Khrustalev <ilya@haplotype-labs.com>
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  Requires-Python: >=3.10
7
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  Description-Content-Type: text/markdown
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+ Requires-Dist: certifi>=2026.10.19
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  Requires-Dist: click>=8.1.8
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  Requires-Dist: haplohub<4,>=3.1.0
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  Requires-Dist: pendulum>=3.0.0
@@ -1,3 +1,4 @@
1
+ certifi>=2026.10.19
1
2
  click>=8.1.8
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  haplohub<4,>=3.1.0
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  pendulum>=3.0.0
@@ -0,0 +1,8 @@
1
+ {
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+ "tag": "3.2.2",
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+ "distance": 0,
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+ "node": "g9bab1d8f9a91c35232095fc7e4dad9fac2010a92",
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+ "dirty": false,
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+ "branch": "HEAD",
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+ "node_date": "2026-10-21"
8
+ }
@@ -9,6 +9,7 @@ authors = [
9
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  requires-python = ">=3.10"
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  dynamic = ["version"]
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  dependencies = [
12
+ "certifi>=2026.10.19",
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  "click>=8.1.8",
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  "haplohub>=3.1.0,<4",
14
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  "pendulum>=3.0.0",