haplohub-cli 3.1.0__tar.gz → 3.2.0__tar.gz

{haplohub_cli-3.1.0/haplohub_cli.egg-info → haplohub_cli-3.2.0}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: haplohub-cli
-Version: 3.1.0
+Version: 3.2.0
 Summary: HaploHub Command Line Interface
 Author-email: Mike Polcari <mike@haplotype-labs.com>, Ilya Khrustalev <ilya@haplotype-labs.com>
 Requires-Python: >=3.10

{haplohub_cli-3.1.0 → haplohub_cli-3.2.0}/haplohub_cli/_version.py

@@ -18,7 +18,7 @@ version_tuple: tuple[int | str, ...]
 commit_id: str | None
 __commit_id__: str | None
 
-__version__ = version = '3.1.0'
-__version_tuple__ = version_tuple = (3, 1, 0)
+__version__ = version = '3.2.0'
+__version_tuple__ = version_tuple = (3, 2, 0)
 
-__commit_id__ = commit_id = 'gdd5920d57'
+__commit_id__ = commit_id = 'gd9453247c'

{haplohub_cli-3.1.0 → haplohub_cli-3.2.0}/haplohub_cli/auth/oauth_client.py

@@ -28,6 +28,9 @@ class AuthRequest:
             f"&scope={' '.join(self.scopes)}"
             f"&code_challenge={self.code_challenge}"
             f"&code_challenge_method=S256"
+            # WorkOS routes the request to the hosted AuthKit sign-in; without
+            # a provider the authorize endpoint rejects the request.
+            f"&provider=authkit"
         )
 
     def generate_code_verifier(self):

haplohub_cli-3.2.0/haplohub_cli/core/api/client.py

@@ -0,0 +1,40 @@
+from functools import cached_property
+
+import click
+from haplohub import ApiClient, Configuration
+
+from haplohub_cli import settings
+from haplohub_cli.auth.token_storage import TokenStorage
+from haplohub_cli.config.config_manager import config_manager
+
+
+class Client:
+    token_storage = TokenStorage(settings.CREDENTIALS_FILE)
+
+    @cached_property
+    def client(self) -> ApiClient:
+        api_url = config_manager.config.api_url
+
+        if not self.token_storage.credentials_exist(api_url):
+            raise click.ClickException(f"No credentials found for {api_url}. Run `haplohub login` first.")
+
+        if self.token_storage.has_api_key(api_url):
+            config = Configuration(
+                host=api_url,
+                api_key={"ApiKeyAuth": self.token_storage.get_api_key(api_url)},
+            )
+        else:
+            config = Configuration(
+                host=api_url,
+                access_token=self.token_storage.get_access_token(api_url),
+            )
+        return ApiClient(config)
+
+    def __getattr__(self, name: str):
+        # client.cohort -> ApiClient.cohort_api, client.member_report -> ApiClient.member_report_api, ...
+        if name.startswith("_"):
+            raise AttributeError(name)
+        return getattr(self.client, f"{name}_api")
+
+
+client = Client()

{haplohub_cli-3.1.0 → haplohub_cli-3.2.0/haplohub_cli.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: haplohub-cli
-Version: 3.1.0
+Version: 3.2.0
 Summary: HaploHub Command Line Interface
 Author-email: Mike Polcari <mike@haplotype-labs.com>, Ilya Khrustalev <ilya@haplotype-labs.com>
 Requires-Python: >=3.10

haplohub_cli-3.2.0/haplohub_cli.egg-info/scm_version.json

@@ -0,0 +1,8 @@
+{
+  "tag": "3.2.0",
+  "distance": 0,
+  "node": "gd9453247c2713bb112104429d4f6321025ad6cbf",
+  "dirty": false,
+  "branch": "HEAD",
+  "node_date": "2026-08-15"
+}

haplohub_cli-3.1.0/haplohub_cli/core/api/client.py

@@ -1,92 +0,0 @@
-from functools import cached_property
-
-import click
-from haplohub import (
-    AccessionApi,
-    AlgorithmApi,
-    AlgorithmResultApi,
-    ApiClient,
-    BiomarkerApi,
-    CohortApi,
-    Configuration,
-    FileApi,
-    MemberApi,
-    MemberReportApi,
-    SampleApi,
-    UploadRequestApi,
-    VariantApi,
-)
-
-from haplohub_cli import settings
-from haplohub_cli.auth.token_storage import TokenStorage
-from haplohub_cli.config.config_manager import config_manager
-
-
-class Client:
-    token_storage = TokenStorage(settings.CREDENTIALS_FILE)
-
-    @cached_property
-    def client(self):
-        api_url = config_manager.config.api_url
-
-        if not self.token_storage.credentials_exist(api_url):
-            raise click.ClickException(f"No credentials found for {api_url}. Run `haplohub login` first.")
-
-        if self.token_storage.has_api_key(api_url):
-            config = Configuration(
-                host=api_url,
-                api_key={"ApiKeyAuth": self.token_storage.get_api_key(api_url)},
-            )
-        else:
-            config = Configuration(
-                host=api_url,
-                access_token=self.token_storage.get_access_token(api_url),
-            )
-        return ApiClient(config)
-
-    @cached_property
-    def cohort(self):
-        return CohortApi(self.client)
-
-    @cached_property
-    def file(self):
-        return FileApi(self.client)
-
-    @cached_property
-    def upload_request(self):
-        return UploadRequestApi(self.client)
-
-    @cached_property
-    def variant(self):
-        return VariantApi(self.client)
-
-    @cached_property
-    def sample(self):
-        return SampleApi(self.client)
-
-    @cached_property
-    def member(self):
-        return MemberApi(self.client)
-
-    @cached_property
-    def biomarker(self):
-        return BiomarkerApi(self.client)
-
-    @cached_property
-    def member_report(self):
-        return MemberReportApi(self.client)
-
-    @cached_property
-    def algorithm(self):
-        return AlgorithmApi(self.client)
-
-    @cached_property
-    def algorithm_result(self):
-        return AlgorithmResultApi(self.client)
-
-    @cached_property
-    def accession(self):
-        return AccessionApi(self.client)
-
-
-client = Client()

haplohub_cli-3.1.0/haplohub_cli.egg-info/scm_version.json

@@ -1,8 +0,0 @@
-{
-  "tag": "3.1.0",
-  "distance": 0,
-  "node": "gdd5920d571bb937a1d702f6dbe4836ab65a45f16",
-  "dirty": false,
-  "branch": "HEAD",
-  "node_date": "2026-08-12"
-}