haplohub-cli 2.0.2__tar.gz → 2.2.0__tar.gz

haplohub_cli-2.2.0/.github/dependabot.yml

@@ -0,0 +1,21 @@
+version: 2
+updates:
+  - package-ecosystem: "github-actions"
+    directory: "/"
+    schedule:
+      interval: "weekly"
+      day: "monday"
+    open-pull-requests-limit: 10
+    groups:
+      actions-minor-patch:
+        patterns:
+          - "*"
+        update-types:
+          - "minor"
+          - "patch"
+    commit-message:
+      prefix: "ci"
+      include: "scope"
+    labels:
+      - "dependencies"
+      - "github-actions"

{haplohub_cli-2.0.2 → haplohub_cli-2.2.0}/PKG-INFO

@@ -1,12 +1,12 @@
 Metadata-Version: 2.4
 Name: haplohub-cli
-Version: 2.0.2
+Version: 2.2.0
 Summary: HaploHub Command Line Interface
 Author-email: Mike Polcari <mike@haplotype-labs.com>, Ilya Khrustalev <ilya@haplotype-labs.com>
 Requires-Python: >=3.8
 Description-Content-Type: text/markdown
 Requires-Dist: click>=8.1.8
-Requires-Dist: haplohub>=2.0.2
+Requires-Dist: haplohub>=2.2.0
 Requires-Dist: pendulum>=3.0.0
 Requires-Dist: requests>=2.32.0
 Requires-Dist: rich>=13.9.4

{haplohub_cli-2.0.2 → haplohub_cli-2.2.0}/haplohub_cli/_version.py

@@ -18,7 +18,7 @@ version_tuple: tuple[int | str, ...]
 commit_id: str | None
 __commit_id__: str | None
 
-__version__ = version = '2.0.2'
-__version_tuple__ = version_tuple = (2, 0, 2)
+__version__ = version = '2.2.0'
+__version_tuple__ = version_tuple = (2, 2, 0)
 
-__commit_id__ = commit_id = 'g91bb88d5b'
+__commit_id__ = commit_id = 'g0c594e360'

{haplohub_cli-2.0.2 → haplohub_cli-2.2.0}/haplohub_cli/commands/variant.py

@@ -1,5 +1,5 @@
 import click
-from haplohub import GetVariantRequest, HgvsTargetSchema, RegionTargetSchema, VariantFilterSchema
+from haplohub import GetVariantRequest, HgvsTargetSchema, RegionTargetSchema, TargetsInner, VariantFilterSchema
 
 from haplohub_cli.core.api.client import client
 
@@ -36,7 +36,7 @@ def region(sample_ids, cohort_id, accession, start, end, reference, alternate, c
 
     request = GetVariantRequest(
         sample_ids=list(sample_ids),
-        targets=[target],
+        targets=[TargetsInner(target)],
         filters=VariantFilterSchema(call_state=call_state),
         selectors=["clinvar"] if clinvar else None,
     )
@@ -54,7 +54,7 @@ def hgvs(sample_ids, cohort_id, hgvs, call_state, clinvar):
     """
     Query variants by HGVS notation
     """
-    targets = [HgvsTargetSchema(value=v) for v in hgvs]
+    targets = [TargetsInner(HgvsTargetSchema(value=v)) for v in hgvs]
 
     request = GetVariantRequest(
         sample_ids=list(sample_ids),

{haplohub_cli-2.0.2 → haplohub_cli-2.2.0}/haplohub_cli.egg-info/PKG-INFO

@@ -1,12 +1,12 @@
 Metadata-Version: 2.4
 Name: haplohub-cli
-Version: 2.0.2
+Version: 2.2.0
 Summary: HaploHub Command Line Interface
 Author-email: Mike Polcari <mike@haplotype-labs.com>, Ilya Khrustalev <ilya@haplotype-labs.com>
 Requires-Python: >=3.8
 Description-Content-Type: text/markdown
 Requires-Dist: click>=8.1.8
-Requires-Dist: haplohub>=2.0.2
+Requires-Dist: haplohub>=2.2.0
 Requires-Dist: pendulum>=3.0.0
 Requires-Dist: requests>=2.32.0
 Requires-Dist: rich>=13.9.4

{haplohub_cli-2.0.2 → haplohub_cli-2.2.0}/haplohub_cli.egg-info/SOURCES.txt

@@ -3,6 +3,7 @@
 README.md
 pyproject.toml
 uv.lock
+.github/dependabot.yml
 .github/workflows/on_pr.yml
 .github/workflows/on_push_main.yml
 haplohub_cli/__init__.py

{haplohub_cli-2.0.2 → haplohub_cli-2.2.0}/haplohub_cli.egg-info/requires.txt

@@ -1,5 +1,5 @@
 click>=8.1.8
-haplohub>=2.0.2
+haplohub>=2.2.0
 pendulum>=3.0.0
 requests>=2.32.0
 rich>=13.9.4

{haplohub_cli-2.0.2 → haplohub_cli-2.2.0}/pyproject.toml

@@ -10,7 +10,7 @@ requires-python = ">=3.8"
 dynamic = ["version"]
 dependencies = [
     "click>=8.1.8",
-    "haplohub>=2.0.2",
+    "haplohub>=2.2.0",
     "pendulum>=3.0.0",
     "requests>=2.32.0",
     "rich>=13.9.4",