haplohub-cli 2.0.0__tar.gz → 2.0.2__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (73) hide show
  1. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/.github/workflows/on_push_main.yml +1 -0
  2. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/PKG-INFO +2 -2
  3. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/_version.py +3 -3
  4. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/commands/file.py +1 -4
  5. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/core/api/client.py +3 -3
  6. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli.egg-info/PKG-INFO +2 -2
  7. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli.egg-info/requires.txt +1 -1
  8. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/pyproject.toml +1 -1
  9. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/.github/workflows/on_pr.yml +0 -0
  10. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/.gitignore +0 -0
  11. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/.pre-commit-config.yaml +0 -0
  12. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/README.md +0 -0
  13. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/__init__.py +0 -0
  14. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/auth/__init__.py +0 -0
  15. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/auth/auth.py +0 -0
  16. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/auth/auth_web_server.py +0 -0
  17. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/auth/oauth_client.py +0 -0
  18. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/auth/tests/__init__.py +0 -0
  19. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/auth/tests/test_auth_web_server.py +0 -0
  20. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/auth/tests/test_token_storage.py +0 -0
  21. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/auth/token_storage.py +0 -0
  22. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/cli.py +0 -0
  23. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/commands/__init__.py +0 -0
  24. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/commands/algorithm/__init__.py +0 -0
  25. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/commands/algorithm/result/__init__.py +0 -0
  26. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/commands/cohort/__init__.py +0 -0
  27. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/commands/cohort/biomarker.py +0 -0
  28. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/commands/cohort/member/__init__.py +0 -0
  29. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/commands/cohort/member/report.py +0 -0
  30. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/commands/cohort/sample.py +0 -0
  31. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/commands/config.py +0 -0
  32. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/commands/login.py +0 -0
  33. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/commands/metadata/__init__.py +0 -0
  34. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/commands/variant.py +0 -0
  35. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/commands/version.py +0 -0
  36. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/config/__init__.py +0 -0
  37. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/config/config.py +0 -0
  38. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/config/config_manager.py +0 -0
  39. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/core/__init__.py +0 -0
  40. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/core/api/__init__.py +0 -0
  41. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/core/checksum.py +0 -0
  42. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/core/network.py +0 -0
  43. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/core/slug.py +0 -0
  44. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/core/tests/__init__.py +0 -0
  45. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/core/tests/test_checksum.py +0 -0
  46. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/core/tests/test_network.py +0 -0
  47. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/core/tests/test_slug.py +0 -0
  48. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/core/types.py +0 -0
  49. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/core/upload.py +0 -0
  50. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/formatters/__init__.py +0 -0
  51. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/formatters/algorithm.py +0 -0
  52. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/formatters/algorithm_result.py +0 -0
  53. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/formatters/biomarker.py +0 -0
  54. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/formatters/cohort.py +0 -0
  55. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/formatters/config.py +0 -0
  56. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/formatters/decorators.py +0 -0
  57. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/formatters/file.py +0 -0
  58. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/formatters/formatter_registry.py +0 -0
  59. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/formatters/generic.py +0 -0
  60. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/formatters/member.py +0 -0
  61. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/formatters/metadata.py +0 -0
  62. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/formatters/sample.py +0 -0
  63. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/formatters/utils.py +0 -0
  64. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/formatters/variant.py +0 -0
  65. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/settings.py +0 -0
  66. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/types/__init__.py +0 -0
  67. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/types/variant_range.py +0 -0
  68. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli.egg-info/SOURCES.txt +0 -0
  69. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli.egg-info/dependency_links.txt +0 -0
  70. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli.egg-info/entry_points.txt +0 -0
  71. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli.egg-info/top_level.txt +0 -0
  72. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/setup.cfg +0 -0
  73. {haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/uv.lock +0 -0
{haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/.github/workflows/on_push_main.yml RENAMED
@@ -24,6 +24,7 @@ jobs:
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  publish-test-pypi:
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  name: Publish to Test PyPI
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+ if: ${{ !startsWith(github.ref, 'refs/tags/') }}
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  runs-on: ubuntu-latest
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  needs: build
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  environment: testpypi
{haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/PKG-INFO RENAMED
@@ -1,12 +1,12 @@
1
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  Metadata-Version: 2.4
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  Name: haplohub-cli
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- Version: 2.0.0
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+ Version: 2.0.2
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  Summary: HaploHub Command Line Interface
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  Author-email: Mike Polcari <mike@haplotype-labs.com>, Ilya Khrustalev <ilya@haplotype-labs.com>
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  Requires-Python: >=3.8
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  Description-Content-Type: text/markdown
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  Requires-Dist: click>=8.1.8
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- Requires-Dist: haplohub>=2.0.0
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+ Requires-Dist: haplohub>=2.0.2
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  Requires-Dist: pendulum>=3.0.0
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  Requires-Dist: requests>=2.32.0
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  Requires-Dist: rich>=13.9.4
{haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/_version.py RENAMED
@@ -18,7 +18,7 @@ version_tuple: tuple[int | str, ...]
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  commit_id: str | None
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  __commit_id__: str | None
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- __version__ = version = '2.0.0'
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- __version_tuple__ = version_tuple = (2, 0, 0)
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+ __version__ = version = '2.0.2'
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+ __version_tuple__ = version_tuple = (2, 0, 2)
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- __commit_id__ = commit_id = 'g0260263d1'
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+ __commit_id__ = commit_id = 'g91bb88d5b'
{haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/commands/file.py RENAMED
@@ -123,12 +123,9 @@ def upload(
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  )
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125
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  task = progress.add_task("Creating upload request", total=1)
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- response = client.upload.create_upload_request(cohort, request).actual_instance
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+ response = client.upload_request.create_upload_request(cohort, request)
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  progress.update(task, completed=1)
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129
- if response.status == "error":
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- return response
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-
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  with ThreadPoolExecutor(max_workers=8) as executor:
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  futures = [
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  executor.submit(
{haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli/core/api/client.py RENAMED
@@ -11,7 +11,7 @@ from haplohub import (
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  MemberApi,
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  MemberReportApi,
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  SampleApi,
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- UploadApi,
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+ UploadRequestApi,
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  VariantApi,
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  )
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@@ -46,8 +46,8 @@ class Client:
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  return FileApi(self.client)
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  @cached_property
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- def upload(self):
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- return UploadApi(self.client)
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+ def upload_request(self):
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+ return UploadRequestApi(self.client)
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  @cached_property
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  def variant(self):
{haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli.egg-info/PKG-INFO RENAMED
@@ -1,12 +1,12 @@
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  Metadata-Version: 2.4
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  Name: haplohub-cli
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- Version: 2.0.0
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+ Version: 2.0.2
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  Summary: HaploHub Command Line Interface
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  Author-email: Mike Polcari <mike@haplotype-labs.com>, Ilya Khrustalev <ilya@haplotype-labs.com>
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  Requires-Python: >=3.8
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  Description-Content-Type: text/markdown
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  Requires-Dist: click>=8.1.8
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- Requires-Dist: haplohub>=2.0.0
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+ Requires-Dist: haplohub>=2.0.2
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  Requires-Dist: pendulum>=3.0.0
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  Requires-Dist: requests>=2.32.0
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  Requires-Dist: rich>=13.9.4
{haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/haplohub_cli.egg-info/requires.txt RENAMED
@@ -1,5 +1,5 @@
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  click>=8.1.8
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- haplohub>=2.0.0
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+ haplohub>=2.0.2
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  pendulum>=3.0.0
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  requests>=2.32.0
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  rich>=13.9.4
{haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/pyproject.toml RENAMED
@@ -10,7 +10,7 @@ requires-python = ">=3.8"
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  dynamic = ["version"]
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  dependencies = [
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  "click>=8.1.8",
13
- "haplohub>=2.0.0",
13
+ "haplohub>=2.0.2",
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  "pendulum>=3.0.0",
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  "requests>=2.32.0",
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  "rich>=13.9.4",
{haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/.gitignore RENAMED
File without changes
{haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/README.md RENAMED
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{haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/setup.cfg RENAMED
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{haplohub_cli-2.0.0 → haplohub_cli-2.0.2}/uv.lock RENAMED
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