halib 0.1.75__tar.gz → 0.1.80__tar.gz

{halib-0.1.75 → halib-0.1.80}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: halib
-Version: 0.1.75
+Version: 0.1.80
 Summary: Small library for common tasks
 Author: Hoang Van Ha
 Author-email: hoangvanhauit@gmail.com
@@ -12,8 +12,12 @@ Description-Content-Type: text/markdown
 License-File: LICENSE.txt
 Requires-Dist: arrow
 Requires-Dist: click
+Requires-Dist: dataclass-wizard
 Requires-Dist: enlighten
+Requires-Dist: itables
+Requires-Dist: kaleido
 Requires-Dist: loguru
+Requires-Dist: matplotlib
 Requires-Dist: more-itertools
 Requires-Dist: moviepy
 Requires-Dist: networkx
@@ -22,25 +26,20 @@ Requires-Dist: omegaconf
 Requires-Dist: opencv-python
 Requires-Dist: pandas
 Requires-Dist: Pillow
+Requires-Dist: plotly
 Requires-Dist: Pyarrow
 Requires-Dist: pycurl
+Requires-Dist: pygwalker
 Requires-Dist: python-telegram-bot
 Requires-Dist: requests
 Requires-Dist: rich
 Requires-Dist: scikit-learn
-Requires-Dist: matplotlib
 Requires-Dist: seaborn
-Requires-Dist: plotly
-Requires-Dist: pygwalker
 Requires-Dist: tabulate
-Requires-Dist: itables
 Requires-Dist: timebudget
 Requires-Dist: tqdm
 Requires-Dist: tube_dl
 Requires-Dist: wandb
-Requires-Dist: dataclass-wizard
-Requires-Dist: kaleido==0.1.*; sys_platform == "win32"
-Requires-Dist: kaleido; sys_platform == "linux"
 Dynamic: author
 Dynamic: author-email
 Dynamic: classifier
@@ -53,7 +52,11 @@ Dynamic: summary
 
 Helper package for coding and automation
 
-**Version 0.1.74**
+**Version 0.1.80**
+
++ `research/profiler`: add `zProfiler` class to measure execution time of contexts and steps, with support for dynamic color scales in plots.
+
+**Version 0.1.77**
 
 + `research/base_exp`: add base experiment class to handle common experiment tasks, including performance calculation and saving results.
 

{halib-0.1.75 → halib-0.1.80}/README.md

@@ -1,6 +1,10 @@
 Helper package for coding and automation
 
-**Version 0.1.74**
+**Version 0.1.80**
+
++ `research/profiler`: add `zProfiler` class to measure execution time of contexts and steps, with support for dynamic color scales in plots.
+
+**Version 0.1.77**
 
 + `research/base_exp`: add base experiment class to handle common experiment tasks, including performance calculation and saving results.
 

{halib-0.1.75 → halib-0.1.80}/halib/research/perftb.py

@@ -306,9 +306,18 @@ class PerfTB:
 
         # Save and open plot
         if save_path:
-            fig.write_image(save_path, engine="kaleido")
+            export_success = False
+            try:
+                fig.write_image(save_path, engine="kaleido")
+                export_success = True
             # pprint(f"Saved: {os.path.abspath(save_path)}")
-            if open_plot and os.name == "nt":  # Windows
+            except Exception as e:
+                print(f"Error saving plot: {e}")
+                pprint(
+                    "Failed to save plot. Check this link: https://stackoverflow.com/questions/69016568/unable-to-export-plotly-images-to-png-with-kaleido. Maybe you need to downgrade kaleido version to 0.1.* or install it via pip install kaleido==0.1.*"
+                )
+                return
+            if export_success and open_plot and os.name == "nt":  # Windows
                 os.system(f'start "" "{os.path.abspath(save_path)}"')
         return fig
 

halib-0.1.80/halib/research/profiler.py

@@ -0,0 +1,288 @@
+import os
+import time
+import json
+
+from pathlib import Path
+from pprint import pprint
+from threading import Lock
+
+from plotly.subplots import make_subplots
+import plotly.graph_objects as go
+import plotly.express as px  # for dynamic color scales
+
+from loguru import logger
+
+class zProfiler:
+    """A singleton profiler to measure execution time of contexts and steps.
+
+    Args:
+        interval_report (int): Frequency of periodic reports (0 to disable).
+        stop_to_view (bool): Pause execution to view reports if True (only in debug mode).
+        output_file (str): Path to save the profiling report.
+        report_format (str): Output format for reports ("json" or "csv").
+
+    Example:
+        prof = zProfiler()
+        prof.ctx_start("my_context")
+        prof.step_start("my_context", "step1")
+        time.sleep(0.1)
+        prof.step_end("my_context", "step1")
+        prof.ctx_end("my_context")
+    """
+
+    _instance = None
+    _lock = Lock()
+
+    def __new__(cls, *args, **kwargs):
+        with cls._lock:
+            if cls._instance is None:
+                cls._instance = super().__new__(cls)
+            return cls._instance
+
+    def __init__(
+        self,
+    ):
+        if not hasattr(self, "_initialized"):
+            self.time_dict = {}
+            self._initialized = True
+
+    def ctx_start(self, ctx_name="ctx_default"):
+        if not isinstance(ctx_name, str) or not ctx_name:
+            raise ValueError("ctx_name must be a non-empty string")
+        if ctx_name not in self.time_dict:
+            self.time_dict[ctx_name] = {
+                "start": time.perf_counter(),
+                "step_dict": {},
+                "report_count": 0,
+            }
+        self.time_dict[ctx_name]["report_count"] += 1
+
+    def ctx_end(self, ctx_name="ctx_default", report_func=None):
+        if ctx_name not in self.time_dict:
+            return
+        self.time_dict[ctx_name]["end"] = time.perf_counter()
+        self.time_dict[ctx_name]["duration"] = (
+            self.time_dict[ctx_name]["end"] - self.time_dict[ctx_name]["start"]
+        )
+
+    def step_start(self, ctx_name, step_name):
+        if not isinstance(step_name, str) or not step_name:
+            raise ValueError("step_name must be a non-empty string")
+        if ctx_name not in self.time_dict:
+            return
+        if step_name not in self.time_dict[ctx_name]["step_dict"]:
+            self.time_dict[ctx_name]["step_dict"][step_name] = []
+        self.time_dict[ctx_name]["step_dict"][step_name].append([time.perf_counter()])
+
+    def step_end(self, ctx_name, step_name):
+        if (
+            ctx_name not in self.time_dict
+            or step_name not in self.time_dict[ctx_name]["step_dict"]
+        ):
+            return
+        self.time_dict[ctx_name]["step_dict"][step_name][-1].append(time.perf_counter())
+
+    def _step_dict_to_detail(self, ctx_step_dict):
+        """
+                'ctx_step_dict': {
+        │   │   'preprocess': [
+        │   │   │   [278090.947465806, 278090.960484853],
+        │   │   │   [278091.178424035, 278091.230944486],
+        │   │   'infer': [
+        │   │   │   [278090.960490534, 278091.178424035],
+        │   │   │   [278091.230944486, 278091.251378469],
+        │   }
+        """
+        assert (
+            len(ctx_step_dict.keys()) > 1
+        ), "step_dict must have only one key (step_name) for detail."
+
+        for step_name, time_list in ctx_step_dict.items():
+            normed_ctx_step_dict = {}
+            if not isinstance(ctx_step_dict[step_name], list):
+                raise ValueError(f"Step data for {step_name} must be a list")
+            step_name = list(ctx_step_dict.keys())[0]
+            normed_time_ls = []
+            for idx, time_data in enumerate(time_list):
+                elapsed_time = -1
+                if len(time_data) == 2:
+                    start, end = time_data[0], time_data[1]
+                    elapsed_time = end - start
+                normed_time_ls.append((idx, elapsed_time))  # including step
+            normed_ctx_step_dict[step_name] = normed_time_ls
+            return normed_ctx_step_dict
+
+    def get_report_dict(self, with_detail=False):
+        report_dict = {}
+        for ctx_name, ctx_dict in self.time_dict.items():
+            report_dict[ctx_name] = {
+                "duration": ctx_dict.get("duration", 0.0),
+                "step_dict": {
+                    "summary": {"avg_time": {}, "percent_time": {}},
+                    "detail": {},
+                },
+            }
+
+            if with_detail:
+                report_dict[ctx_name]["step_dict"]["detail"] = (
+                    self._step_dict_to_detail(ctx_dict["step_dict"])
+                )
+            avg_time_list = []
+            epsilon = 1e-5
+            for step_name, step_list in ctx_dict["step_dict"].items():
+                durations = []
+                try:
+                    for time_data in step_list:
+                        if len(time_data) != 2:
+                            continue
+                        start, end = time_data
+                        durations.append(end - start)
+                except Exception as e:
+                    logger.error(
+                        f"Error processing step {step_name} in context {ctx_name}: {e}"
+                    )
+                    continue
+                if not durations:
+                    continue
+                avg_time = sum(durations) / len(durations)
+                if avg_time < epsilon:
+                    continue
+                avg_time_list.append((step_name, avg_time))
+            total_avg_time = (
+                sum(time for _, time in avg_time_list) or 1e-10
+            )  # Avoid division by zero
+            for step_name, avg_time in avg_time_list:
+                report_dict[ctx_name]["step_dict"]["summary"]["percent_time"][
+                    f"per_{step_name}"
+                ] = (avg_time / total_avg_time) * 100.0
+                report_dict[ctx_name]["step_dict"]["summary"]["avg_time"][
+                    f"avg_{step_name}"
+                ] = avg_time
+            report_dict[ctx_name]["step_dict"]["summary"][
+                "total_avg_time"
+            ] = total_avg_time
+            report_dict[ctx_name]["step_dict"]["summary"] = dict(
+                sorted(report_dict[ctx_name]["step_dict"]["summary"].items())
+            )
+        return report_dict
+
+    @classmethod
+    @classmethod
+    def plot_formatted_data(
+        cls, profiler_data, outdir=None, file_format="png", do_show=False
+    ):
+        """
+        Plot each context in a separate figure with bar + pie charts.
+        Save each figure in the specified format (png or svg).
+        """
+
+        if outdir is not None:
+            os.makedirs(outdir, exist_ok=True)
+
+        if file_format.lower() not in ["png", "svg"]:
+            raise ValueError("file_format must be 'png' or 'svg'")
+
+        results = {}  # {context: fig}
+
+        for ctx, ctx_data in profiler_data.items():
+            summary = ctx_data["step_dict"]["summary"]
+            avg_times = summary["avg_time"]
+            percent_times = summary["percent_time"]
+
+            step_names = [s.replace("avg_", "") for s in avg_times.keys()]
+            pprint(f'{step_names=}')
+            n_steps = len(step_names)
+
+            # Generate dynamic colors
+            colors = px.colors.sample_colorscale(
+                "Viridis", [i / (n_steps - 1) for i in range(n_steps)]
+            )
+            # pprint(f'{len(colors)} colors generated for {n_steps} steps')
+            color_map = dict(zip(step_names, colors))
+
+            # Create figure
+            fig = make_subplots(
+                rows=1,
+                cols=2,
+                subplot_titles=[f"Avg Time", f"% Time"],
+                specs=[[{"type": "bar"}, {"type": "pie"}]],
+            )
+
+            # Bar chart
+            fig.add_trace(
+                go.Bar(
+                    x=step_names,
+                    y=list(avg_times.values()),
+                    text=[f"{v*1000:.2f} ms" for v in avg_times.values()],
+                    textposition="outside",
+                    marker=dict(color=[color_map[s] for s in step_names]),
+                    name="",  # unified legend
+                    showlegend=False,
+                ),
+                row=1,
+                col=1,
+            )
+
+            # Pie chart (colors match bar)
+            fig.add_trace(
+                go.Pie(
+                    labels=step_names,
+                    values=list(percent_times.values()),
+                    marker=dict(colors=[color_map[s] for s in step_names]),
+                    hole=0.4,
+                    name="",
+                    showlegend=True,
+                ),
+                row=1,
+                col=2,
+            )
+
+            # Layout
+            fig.update_layout(
+                title_text=f"Context Profiler: {ctx}",
+                width=1000,
+                height=400,
+                showlegend=True,
+                legend=dict(title="Steps", x=1.05, y=0.5, traceorder="normal"),
+                hovermode="x unified",
+            )
+
+            fig.update_xaxes(title_text="Steps", row=1, col=1)
+            fig.update_yaxes(title_text="Avg Time (ms)", row=1, col=1)
+
+            # Show figure
+            if do_show:
+                fig.show()
+
+            # Save figure
+            if outdir is not None:
+                file_path = os.path.join(outdir, f"{ctx}_summary.{file_format.lower()}")
+                fig.write_image(file_path)
+                print(f"Saved figure: {file_path}")
+
+            results[ctx] = fig
+
+        return results
+
+    def report_and_plot(self, outdir=None, file_format="png", do_show=False):
+        """
+        Generate the profiling report and plot the formatted data.
+
+        Args:
+            outdir (str): Directory to save figures. If None, figures are only shown.
+            file_format (str): Target file format, "png" or "svg". Default is "png".
+            do_show (bool): Whether to display the plots. Default is False.
+        """
+        report = self.get_report_dict()
+        self.get_report_dict(with_detail=False)
+        return self.plot_formatted_data(
+            report, outdir=outdir, file_format=file_format, do_show=do_show
+        )
+
+    def save_report_dict(self, output_file, with_detail=False):
+        try:
+            report = self.get_report_dict(with_detail=with_detail)
+            with open(output_file, "w") as f:
+                json.dump(report, f, indent=4)
+        except Exception as e:
+            logger.error(f"Failed to save report to {output_file}: {e}")

{halib-0.1.75 → halib-0.1.80}/halib.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: halib
-Version: 0.1.75
+Version: 0.1.80
 Summary: Small library for common tasks
 Author: Hoang Van Ha
 Author-email: hoangvanhauit@gmail.com
@@ -12,8 +12,12 @@ Description-Content-Type: text/markdown
 License-File: LICENSE.txt
 Requires-Dist: arrow
 Requires-Dist: click
+Requires-Dist: dataclass-wizard
 Requires-Dist: enlighten
+Requires-Dist: itables
+Requires-Dist: kaleido
 Requires-Dist: loguru
+Requires-Dist: matplotlib
 Requires-Dist: more-itertools
 Requires-Dist: moviepy
 Requires-Dist: networkx
@@ -22,25 +26,20 @@ Requires-Dist: omegaconf
 Requires-Dist: opencv-python
 Requires-Dist: pandas
 Requires-Dist: Pillow
+Requires-Dist: plotly
 Requires-Dist: Pyarrow
 Requires-Dist: pycurl
+Requires-Dist: pygwalker
 Requires-Dist: python-telegram-bot
 Requires-Dist: requests
 Requires-Dist: rich
 Requires-Dist: scikit-learn
-Requires-Dist: matplotlib
 Requires-Dist: seaborn
-Requires-Dist: plotly
-Requires-Dist: pygwalker
 Requires-Dist: tabulate
-Requires-Dist: itables
 Requires-Dist: timebudget
 Requires-Dist: tqdm
 Requires-Dist: tube_dl
 Requires-Dist: wandb
-Requires-Dist: dataclass-wizard
-Requires-Dist: kaleido==0.1.*; sys_platform == "win32"
-Requires-Dist: kaleido; sys_platform == "linux"
 Dynamic: author
 Dynamic: author-email
 Dynamic: classifier
@@ -53,7 +52,11 @@ Dynamic: summary
 
 Helper package for coding and automation
 
-**Version 0.1.74**
+**Version 0.1.80**
+
++ `research/profiler`: add `zProfiler` class to measure execution time of contexts and steps, with support for dynamic color scales in plots.
+
+**Version 0.1.77**
 
 + `research/base_exp`: add base experiment class to handle common experiment tasks, including performance calculation and saving results.
 

{halib-0.1.75 → halib-0.1.80}/halib.egg-info/SOURCES.txt

@@ -33,6 +33,7 @@ halib/research/metrics.py
 halib/research/perfcalc.py
 halib/research/perftb.py
 halib/research/plot.py
+halib/research/profiler.py
 halib/research/torchloader.py
 halib/research/wandb_op.py
 halib/system/__init__.py

{halib-0.1.75 → halib-0.1.80}/halib.egg-info/requires.txt

@@ -1,7 +1,11 @@
 arrow
 click
+dataclass-wizard
 enlighten
+itables
+kaleido
 loguru
+matplotlib
 more-itertools
 moviepy
 networkx
@@ -10,26 +14,17 @@ omegaconf
 opencv-python
 pandas
 Pillow
+plotly
 Pyarrow
 pycurl
+pygwalker
 python-telegram-bot
 requests
 rich
 scikit-learn
-matplotlib
 seaborn
-plotly
-pygwalker
 tabulate
-itables
 timebudget
 tqdm
 tube_dl
 wandb
-dataclass-wizard
-
-[:sys_platform == "linux"]
-kaleido
-
-[:sys_platform == "win32"]
-kaleido==0.1.*

{halib-0.1.75 → halib-0.1.80}/setup.py

@@ -8,7 +8,7 @@ with open("requirements.txt") as f:
 
 setuptools.setup(
     name="halib",
-    version="0.1.75",
+    version="0.1.80",
     author="Hoang Van Ha",
     author_email="hoangvanhauit@gmail.com",
     description="Small library for common tasks",