h5rdmtoolbox 2.7.1__tar.gz → 2.7.2__tar.gz

{h5rdmtoolbox-2.7.1 → h5rdmtoolbox-2.7.2}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: h5rdmtoolbox
-Version: 2.7.1
+Version: 2.7.2
 Summary: Supporting a FAIR Research Data lifecycle using Python and HDF5.
 Author-email: Matthias Probst <matth.probst@gmail.com>
 License-Expression: MIT

h5rdmtoolbox-2.7.2/h5rdmtoolbox/ld/user/datasets.py

@@ -0,0 +1,45 @@
+import rdflib
+from ontolutils.namespacelib import SCHEMA
+
+from h5rdmtoolbox.ld.rdf import PROTECTED_ATTRIBUTE_NAMES
+from h5rdmtoolbox.ld.user.attributes import process_attribute
+from h5rdmtoolbox.ld.utils import get_obj_bnode
+from .utils import apply_rdf_mappings
+from ..rdf import RDFManager
+import json
+
+def process_dataset(*, dataset, graph, rdf_mappings, blank_node_iri_base=None):
+    dataset_uri = get_obj_bnode(dataset, blank_node_iri_base=blank_node_iri_base)
+    for ak, av in dataset.attrs.items():
+        if ak not in PROTECTED_ATTRIBUTE_NAMES:
+            process_attribute(dataset, ak, av, graph, blank_node_iri_base=blank_node_iri_base)
+        apply_rdf_mappings(dataset, dataset_uri, graph, rdf_mappings)
+
+    rdf_type = RDFManager(dataset.attrs).type
+    if rdf_type is not None:
+        graph.add((dataset_uri, rdflib.RDF.type, rdflib.URIRef(rdf_type)))
+
+    rdf_subject = RDFManager(dataset.attrs).subject
+    if rdf_subject:
+        graph.add((dataset_uri, SCHEMA.about, rdflib.URIRef(rdf_subject)))
+
+    rdf_predicate = RDFManager(dataset.attrs).predicate
+    if rdf_predicate:
+        _predicates = dataset.attrs.get("RDF_PREDICATE", None)
+        if _predicates:
+            self_predicate = json.loads(dataset.attrs["RDF_PREDICATE"]).get("SELF", None)
+            if self_predicate:
+                parent_uri = get_obj_bnode(dataset.parent, blank_node_iri_base=blank_node_iri_base)
+
+                _parent_subject = RDFManager(dataset.parent.attrs).subject
+
+                if _parent_subject:
+                    if rdf_subject:
+                        graph.add((rdflib.URIRef(_parent_subject), rdflib.URIRef(self_predicate), rdflib.URIRef(rdf_subject)))
+                    else:
+                        graph.add((rdflib.URIRef(_parent_subject), rdflib.URIRef(self_predicate), dataset_uri))
+                else:
+                    if rdf_subject:
+                        graph.add((parent_uri, rdflib.URIRef(self_predicate), rdflib.URIRef(rdf_subject)))
+                    else:
+                        graph.add((parent_uri, rdflib.URIRef(self_predicate), dataset_uri))

{h5rdmtoolbox-2.7.1 → h5rdmtoolbox-2.7.2}/h5rdmtoolbox/wrapper/core.py

@@ -2513,6 +2513,7 @@ class File(h5py.File, Group):
                        contextual=contextual,
                        file_uri=file_uri,
                        skipND=skipND,
+                       context=context,
                        rdf_mappings=rdf_mappings)
         if prefix:
             graph.bind(prefix, file_uri)

{h5rdmtoolbox-2.7.1 → h5rdmtoolbox-2.7.2}/h5rdmtoolbox.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: h5rdmtoolbox
-Version: 2.7.1
+Version: 2.7.2
 Summary: Supporting a FAIR Research Data lifecycle using Python and HDF5.
 Author-email: Matthias Probst <matth.probst@gmail.com>
 License-Expression: MIT

{h5rdmtoolbox-2.7.1 → h5rdmtoolbox-2.7.2}/pyproject.toml

@@ -7,7 +7,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "h5rdmtoolbox"
-version = "2.7.1"
+version = "2.7.2"
 description = "Supporting a FAIR Research Data lifecycle using Python and HDF5."
 readme = "README.md"
 requires-python = ">=3.9, <3.14"

h5rdmtoolbox-2.7.1/h5rdmtoolbox/ld/user/datasets.py

@@ -1,24 +0,0 @@
-import rdflib
-from ontolutils.namespacelib import SCHEMA
-
-from h5rdmtoolbox.ld.rdf import PROTECTED_ATTRIBUTE_NAMES
-from h5rdmtoolbox.ld.user.attributes import process_attribute
-from h5rdmtoolbox.ld.utils import get_obj_bnode
-from .utils import apply_rdf_mappings
-from ..rdf import RDFManager
-
-
-def process_dataset(*, dataset, graph, rdf_mappings, blank_node_iri_base=None):
-    dataset_uri = get_obj_bnode(dataset, blank_node_iri_base=blank_node_iri_base)
-    for ak, av in dataset.attrs.items():
-        if ak not in PROTECTED_ATTRIBUTE_NAMES:
-            process_attribute(dataset, ak, av, graph, blank_node_iri_base=blank_node_iri_base)
-        apply_rdf_mappings(dataset, dataset_uri, graph, rdf_mappings)
-
-    rdf_type = RDFManager(dataset.attrs).type
-    if rdf_type is not None:
-        graph.add((dataset_uri, rdflib.RDF.type, rdflib.URIRef(rdf_type)))
-
-    rdf_subject = RDFManager(dataset.attrs).subject
-    if rdf_subject:
-        graph.add((dataset_uri, SCHEMA.about, rdflib.URIRef(rdf_subject)))