h5rdmtoolbox 2.5.4__tar.gz → 2.6.0__tar.gz

{h5rdmtoolbox-2.5.4 → h5rdmtoolbox-2.6.0}/PKG-INFO

@@ -1,16 +1,19 @@
 Metadata-Version: 2.4
 Name: h5rdmtoolbox
-Version: 2.5.4
+Version: 2.6.0
 Summary: Supporting a FAIR Research Data lifecycle using Python and HDF5.
-Home-page: https://h5rdmtoolbox.readthedocs.io/en/latest/
-Author: Matthias Probst
-Author-email: matth.probst@gmail.com
+Author-email: Matthias Probst <matth.probst@gmail.com>
+License-Expression: MIT
+Project-URL: Homepage, https://h5rdmtoolbox.readthedocs.io/en/latest/
+Project-URL: Documentation, https://h5rdmtoolbox.readthedocs.io/en/latest/
+Project-URL: Repository, https://github.com/matthiasprobst/h5rdmtoolbox
+Project-URL: Bug Tracker, https://github.com/matthiasprobst/h5rdmtoolbox/issues
+Keywords: hdf5,research data,fair,metadata
 Classifier: Programming Language :: Python :: 3.9
 Classifier: Programming Language :: Python :: 3.10
 Classifier: Programming Language :: Python :: 3.11
 Classifier: Programming Language :: Python :: 3.12
 Classifier: Programming Language :: Python :: 3.13
-Classifier: License :: OSI Approved :: MIT License
 Classifier: Operating System :: OS Independent
 Classifier: Development Status :: 4 - Beta
 Classifier: Topic :: Scientific/Engineering
@@ -29,7 +32,7 @@ Requires-Dist: pint>=0.24.4
 Requires-Dist: pint_xarray<=0.6.0,>=0.2.1
 Requires-Dist: regex>=2020.7.9
 Requires-Dist: packaging>=24.1
-Requires-Dist: ontolutils<1.0.0,>=0.25.1
+Requires-Dist: ontolutils<0.28.0,>=0.27.5
 Requires-Dist: python-forge==18.6.0
 Requires-Dist: requests>=2.32.4
 Requires-Dist: pydantic~=2.8
@@ -48,119 +51,33 @@ Requires-Dist: xmltodict<=0.13.0; extra == "snt"
 Requires-Dist: tabulate<=0.9.0,>=0.8.10; extra == "snt"
 Requires-Dist: python-gitlab; extra == "snt"
 Requires-Dist: pypandoc>=1.11; extra == "snt"
+Provides-Extra: catalog
+Requires-Dist: SPARQLWrapper>=2.0.0; extra == "catalog"
 Provides-Extra: gui
 Requires-Dist: PyQt5==5.15.10; extra == "gui"
+Provides-Extra: test-core
+Requires-Dist: toml>0.10.0; extra == "test-core"
+Requires-Dist: pytest>=8.3.3; extra == "test-core"
+Requires-Dist: pytest-cov>=5.0.0; extra == "test-core"
+Requires-Dist: pylint; extra == "test-core"
+Requires-Dist: ssnolib<3.0.0,>=2.2.0.2; extra == "test-core"
+Requires-Dist: mongomock==4.1.2; extra == "test-core"
+Requires-Dist: scipy>=1.10.1; extra == "test-core"
+Requires-Dist: scikit-image>=0.21.0; extra == "test-core"
+Requires-Dist: scikit-learn; extra == "test-core"
 Provides-Extra: test
-Requires-Dist: pytest>=8.3.3; extra == "test"
-Requires-Dist: pytest-cov>=5.0.0; extra == "test"
-Requires-Dist: pylint; extra == "test"
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-Requires-Dist: scikit-learn; extra == "test"
-Requires-Dist: pandas>=1.4.3; extra == "test"
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-Requires-Dist: python-gitlab; extra == "test"
-Requires-Dist: pypandoc>=1.11; extra == "test"
-Requires-Dist: pymongo<=4.10.1,>=4.2.0; extra == "test"
+Requires-Dist: h5rdmtoolbox[catalog,csv,database,snt,test-core]; extra == "test"
 Provides-Extra: docs
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-Requires-Dist: pymongo<=4.10.1,>=4.2.0; extra == "docs"
 Requires-Dist: Sphinx==8.0.0; extra == "docs"
 Requires-Dist: sphinx_book_theme==1.1.3; extra == "docs"
-Requires-Dist: sphinx-copybutton==0.5.2; extra == "docs"
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-Requires-Dist: scikit-image>=0.21.0; extra == "docs"
-Requires-Dist: scikit-learn; extra == "docs"
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+Requires-Dist: myst_nb==1.2.0; extra == "docs"
+Requires-Dist: sphinxcontrib_bibtex==2.6.3; extra == "docs"
 Provides-Extra: complete
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-Requires-Dist: PyQt5==5.15.10; extra == "complete"
-Requires-Dist: pytest>=8.3.3; extra == "complete"
-Requires-Dist: pytest-cov>=5.0.0; extra == "complete"
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-Requires-Dist: python-gitlab; extra == "complete"
-Requires-Dist: pypandoc>=1.11; extra == "complete"
-Requires-Dist: pymongo<=4.10.1,>=4.2.0; extra == "complete"
+Requires-Dist: h5rdmtoolbox[catalog,csv,database,gui,layout_validation,snt,test]; extra == "complete"
 Provides-Extra: complete-with-docs
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-Requires-Dist: scikit-image>=0.21.0; extra == "complete-with-docs"
-Requires-Dist: scikit-learn; extra == "complete-with-docs"
+Requires-Dist: h5rdmtoolbox[complete,docs]; extra == "complete-with-docs"
 Dynamic: license-file
 
 # HDF5 Research Data Management Toolbox
@@ -204,7 +121,8 @@ For everybody, who is...
 - ... looking for a management approach for his or her data.
 - ... community has not yet established a stable convention.
 - ... working with small and big data, that fits into HDF5 files.
-- ... looking for an easy way to work with HDF5, especially through [Jupyter Notebooks](https://jupyterlab.readthedocs.io/en/stable/getting_started/installation.html).
+- ... looking for an easy way to work with HDF5, especially
+  through [Jupyter Notebooks](https://jupyterlab.readthedocs.io/en/stable/getting_started/installation.html).
 - ... trying to integrate HDF5 with repositories and databases.
 - ... wishing to enrich data semantically with the RDF standard.
 - ... looking for a way to do all the above whiles not needing to learn a new syntax.
@@ -220,8 +138,9 @@ For everybody, who ...
 ## Package Architecture/structure
 
 The toolbox implements six modules, which are shown below. The numbers reference to their main usage in the stages in
-the data lifecycle above. The wrapper module implements the main interface between the user and the HDF5 file. It 
-extends the features of the underlying `h5py` library. Some of the features are implemented in other modules, hence the 
+the data lifecycle shown [here](https://h5rdmtoolbox.readthedocs.io/en/latest/gettingstarted/index.html). The wrapper
+module implements the main interface between the user and the HDF5 file. It
+extends the features of the underlying `h5py` library. Some of the features are implemented in other modules, hence the
 wrapper module depends on the convention, database and linked data (ld) module.
 
 <a href="https://h5rdmtoolbox.readthedocs.io/en/latest/"><img src="docs/_static/h5tbx_modules.svg" alt="H5TBX modules" style="widht:600px;"></a>
@@ -242,6 +161,9 @@ Current implementation highlights in the modules:
   are implemented.
 - The **layout** module allows to define expectations on the internal layout (object names, location, attributes,
   properties) of HDF5 files.
+- The **catalog** module allows interfacing to HDF5 and RDF data published on Zenodo. Via a catalog file, a providers
+  describe the data in various zenodo records they want to share. Through the catalog file, users can work with the
+  data without downloading the full HDF5 files first.
 
 ## Quickstart
 
@@ -264,7 +186,6 @@ package via pip:
 
     pip install h5RDMtoolbox
 
-
 ### Install from source:
 
 Developers may clone the repository and install the package from source. Clone the repository first:

{h5rdmtoolbox-2.5.4 → h5rdmtoolbox-2.6.0}/README.md

@@ -39,7 +39,8 @@ For everybody, who is...
 - ... looking for a management approach for his or her data.
 - ... community has not yet established a stable convention.
 - ... working with small and big data, that fits into HDF5 files.
-- ... looking for an easy way to work with HDF5, especially through [Jupyter Notebooks](https://jupyterlab.readthedocs.io/en/stable/getting_started/installation.html).
+- ... looking for an easy way to work with HDF5, especially
+  through [Jupyter Notebooks](https://jupyterlab.readthedocs.io/en/stable/getting_started/installation.html).
 - ... trying to integrate HDF5 with repositories and databases.
 - ... wishing to enrich data semantically with the RDF standard.
 - ... looking for a way to do all the above whiles not needing to learn a new syntax.
@@ -55,8 +56,9 @@ For everybody, who ...
 ## Package Architecture/structure
 
 The toolbox implements six modules, which are shown below. The numbers reference to their main usage in the stages in
-the data lifecycle above. The wrapper module implements the main interface between the user and the HDF5 file. It 
-extends the features of the underlying `h5py` library. Some of the features are implemented in other modules, hence the 
+the data lifecycle shown [here](https://h5rdmtoolbox.readthedocs.io/en/latest/gettingstarted/index.html). The wrapper
+module implements the main interface between the user and the HDF5 file. It
+extends the features of the underlying `h5py` library. Some of the features are implemented in other modules, hence the
 wrapper module depends on the convention, database and linked data (ld) module.
 
 <a href="https://h5rdmtoolbox.readthedocs.io/en/latest/"><img src="docs/_static/h5tbx_modules.svg" alt="H5TBX modules" style="widht:600px;"></a>
@@ -77,6 +79,9 @@ Current implementation highlights in the modules:
   are implemented.
 - The **layout** module allows to define expectations on the internal layout (object names, location, attributes,
   properties) of HDF5 files.
+- The **catalog** module allows interfacing to HDF5 and RDF data published on Zenodo. Via a catalog file, a providers
+  describe the data in various zenodo records they want to share. Through the catalog file, users can work with the
+  data without downloading the full HDF5 files first.
 
 ## Quickstart
 
@@ -99,7 +104,6 @@ package via pip:
 
     pip install h5RDMtoolbox
 
-
 ### Install from source:
 
 Developers may clone the repository and install the package from source. Clone the repository first: