h5netcdf 1.6.3__tar.gz → 1.7.0__tar.gz

{h5netcdf-1.6.3 → h5netcdf-1.7.0}/.pre-commit-config.yaml

@@ -1,6 +1,6 @@
 repos:
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.6.0
+    rev: v6.0.0
     hooks:
       - id: trailing-whitespace
       - id: end-of-file-fixer
@@ -10,16 +10,16 @@ repos:
       - id: debug-statements
       - id: mixed-line-ending
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: 'v0.5.0'
+    rev: 'v0.12.12'
     hooks:
       - id: ruff
         args: [ "--fix" ]
   - repo: https://github.com/psf/black
-    rev: 24.4.2
+    rev: 25.1.0
     hooks:
       - id: black
   - repo: https://github.com/adamchainz/blacken-docs
-    rev: "1.18.0"
+    rev: "1.20.0"
     hooks:
       - id: blacken-docs
         additional_dependencies:

{h5netcdf-1.6.3 → h5netcdf-1.7.0}/CHANGELOG.rst

@@ -1,6 +1,27 @@
 Change Log
 ----------
 
+Version 1.7.0 (October 15th, 2025):
+
+- Fix unintentional changes in test suite (:pull:`277`).
+  By `Kai Mühlbauer <https://github.com/kmuehlbauer>`_
+- Create ENUM with low level API to keep order-by-value, add h5dump based tests (:pull:`285`).
+  By `Kai Mühlbauer <https://github.com/kmuehlbauer>`_ and `David Huard <https://github.com/huard>`_
+- Fix interoperability issues between netcdf4/h5netcdf, namely resizing variables using partial slices,
+creating string attributes with NULLTERM, proper attachment of _Netcdf4Coordinates and _Netcdf4Dimid as well as special string type fillvalues (:pull:`286`).
+  By `Kai Mühlbauer <https://github.com/kmuehlbauer>`_ and `David Huard <https://github.com/huard>`_
+- Add the `format` argument to `h5netcdf.File` and support for the `NETCDF4_CLASSIC` format (:issue:`280`, :pull:`283`).
+  By `David Huard <https://github.com/huard>`_
+- Do not return padded arrays for slices larger than variable shape (:issue:`287`, :pull:`288`).
+  By `Kai Mühlbauer <https://github.com/kmuehlbauer>`_
+
+Version 1.6.4 (August 5th, 2025):
+
+- Cleanup: pyupgrade --py39-plus (:pull:`272`).
+  By `Kurt Schwehr <https://github.com/schwehr>`_
+- Add better error messages when operating on a closed file (:issue:`274`, :pull:`275`).
+  By `Kai Mühlbauer <https://github.com/kmuehlbauer>`_
+
 Version 1.6.3 (June 30th, 2025):
 
 - fix invalid string format specifier, match raises/warns with messages in test suite,

{h5netcdf-1.6.3 → h5netcdf-1.7.0}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: h5netcdf
-Version: 1.6.3
+Version: 1.7.0
 Summary: netCDF4 via h5py
 Author-email: Stephan Hoyer <shoyer@gmail.com>, Kai Mühlbauer <kmuehlbauer@wradlib.org>
 Maintainer-email: h5netcdf developers <devteam@h5netcdf.org>
@@ -124,10 +124,10 @@ Usage
 -----
 
 h5netcdf has two APIs, a new API and a legacy API. Both interfaces currently
-reproduce most of the features of the netCDF interface, with the notable
-exception of support for operations that rename or delete existing objects.
-We simply haven't gotten around to implementing this yet. Patches
-would be very welcome.
+reproduce most of the features of the netCDF interface, including the ability
+to write NETCDF4 and NETCDF4_CLASSIC formatted files. Support for operations
+that rename or delete existing objects is still missing, and patches would be
+very welcome.
 
 New API
 ~~~~~~~

{h5netcdf-1.6.3 → h5netcdf-1.7.0}/README.rst

@@ -64,10 +64,10 @@ Usage
 -----
 
 h5netcdf has two APIs, a new API and a legacy API. Both interfaces currently
-reproduce most of the features of the netCDF interface, with the notable
-exception of support for operations that rename or delete existing objects.
-We simply haven't gotten around to implementing this yet. Patches
-would be very welcome.
+reproduce most of the features of the netCDF interface, including the ability
+to write NETCDF4 and NETCDF4_CLASSIC formatted files. Support for operations
+that rename or delete existing objects is still missing, and patches would be
+very welcome.
 
 New API
 ~~~~~~~

{h5netcdf-1.6.3 → h5netcdf-1.7.0}/doc/devguide.rst

@@ -13,6 +13,7 @@ Contributors
 - `Aleksandar Jelenak <https://github.com/ajelenak>`_
 - `Bas Couwenberg <https://github.com/sebastic>`_.
 - `Brett Naul <https://github.com/bnaul>`_
+- `David Huard <https://github.com/huard>`_
 - `Dion Häfner <https://github.com/dionhaefner>`_
 - `Drew Parsons <https://github.com/drew-parsons>`_
 - `Ezequiel Cimadevilla Alvarez <https://github.com/zequihg50>`_
@@ -49,7 +50,7 @@ Continuous Integration
 or a PullRequest branch several checks are performed:
 
 - Lint and style checks (``ruff``, ``black``)
-- Unit tests with latest ``h5py3`` (Python 3.9, 3.10, 3.11) facilitating GitHub Ubuntu worker
+- Unit tests with latest ``h5py3`` (and Python versions) facilitating GitHub Ubuntu worker
 - Documentation build, artifacts are made available to download
 - On release, source-tarball and universal wheel is uploaded to PyPI and documentation is made available
   on `h5netcdf GitHub Pages`_

{h5netcdf-1.6.3 → h5netcdf-1.7.0}/h5netcdf/_version.py

@@ -1,7 +1,14 @@
 # file generated by setuptools-scm
 # don't change, don't track in version control
 
-__all__ = ["__version__", "__version_tuple__", "version", "version_tuple"]
+__all__ = [
+    "__version__",
+    "__version_tuple__",
+    "version",
+    "version_tuple",
+    "__commit_id__",
+    "commit_id",
+]
 
 TYPE_CHECKING = False
 if TYPE_CHECKING:
@@ -9,13 +16,19 @@ if TYPE_CHECKING:
     from typing import Union
 
     VERSION_TUPLE = Tuple[Union[int, str], ...]
+    COMMIT_ID = Union[str, None]
 else:
     VERSION_TUPLE = object
+    COMMIT_ID = object
 
 version: str
 __version__: str
 __version_tuple__: VERSION_TUPLE
 version_tuple: VERSION_TUPLE
+commit_id: COMMIT_ID
+__commit_id__: COMMIT_ID
 
-__version__ = version = '1.6.3'
-__version_tuple__ = version_tuple = (1, 6, 3)
+__version__ = version = '1.7.0'
+__version_tuple__ = version_tuple = (1, 7, 0)
+
+__commit_id__ = commit_id = 'g9cb422fb6'

{h5netcdf-1.6.3 → h5netcdf-1.7.0}/h5netcdf/attrs.py

@@ -2,6 +2,8 @@ from collections.abc import MutableMapping
 
 import numpy as np
 
+from .utils import _create_string_attribute
+
 _HIDDEN_ATTRS = frozenset(
     [
         "REFERENCE_LIST",
@@ -17,10 +19,11 @@ _HIDDEN_ATTRS = frozenset(
 
 
 class Attributes(MutableMapping):
-    def __init__(self, h5attrs, check_dtype, h5py_pckg):
+    def __init__(self, h5attrs, check_dtype, h5py_pckg, format="NETCDF4"):
         self._h5attrs = h5attrs
         self._check_dtype = check_dtype
         self._h5py = h5py_pckg
+        self._format = format
 
     def __getitem__(self, key):
         if key in _HIDDEN_ATTRS:
@@ -83,7 +86,25 @@ class Attributes(MutableMapping):
             dtype = np.asarray(value).dtype
 
         self._check_dtype(dtype)
-        self._h5attrs[key] = value
+
+        if (
+            dtype.kind in {"S", "U"}  # for strings
+            and dtype.metadata is None  # but not special h5py strings
+            and not isinstance(value, (list, self._h5py.Empty))
+            and self._h5py.__name__ == "h5py"
+        ):
+            # create with low level API to get fixed length strings
+            # as netcdf4-python/netcdf-c does
+            _create_string_attribute(self._h5attrs._id, key, value)
+        # always for CLASSIC mode
+        elif self._format == "NETCDF4_CLASSIC":
+            self._h5attrs[key] = np.atleast_1d(value)
+        else:
+            # netcdf4-python/netcdf-c writes non-string scalars as simple dataset
+            # converting to 1D
+            if np.isscalar(value) and dtype.kind not in {"S", "U"}:
+                value = np.atleast_1d(value)
+            self._h5attrs[key] = value
 
     def __delitem__(self, key):
         del self._h5attrs[key]