gwm 3.1.2__tar.gz

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Files changed (44) hide show
  1. gwm-3.1.2/.github/workflows/wheels.yml +86 -0
  2. gwm-3.1.2/.gitignore +28 -0
  3. gwm-3.1.2/CMakeLists.txt +60 -0
  4. gwm-3.1.2/LICENSE +24 -0
  5. gwm-3.1.2/LICENSES/LGPL-2.1-or-later.txt +501 -0
  6. gwm-3.1.2/Makefile +11 -0
  7. gwm-3.1.2/PKG-INFO +199 -0
  8. gwm-3.1.2/PUBLISHING.md +72 -0
  9. gwm-3.1.2/README.md +167 -0
  10. gwm-3.1.2/dat/mutagen.gsp +20944 -0
  11. gwm-3.1.2/dat/mutagen_query.gsp +178 -0
  12. gwm-3.1.2/pyproject.toml +92 -0
  13. gwm-3.1.2/python/bindings.cpp +208 -0
  14. gwm-3.1.2/python/gwm/__init__.py +187 -0
  15. gwm-3.1.2/python/gwm/__main__.py +4 -0
  16. gwm-3.1.2/python/gwm/_cli.py +68 -0
  17. gwm-3.1.2/python/gwm/_core.pyi +31 -0
  18. gwm-3.1.2/python/gwm/py.typed +0 -0
  19. gwm-3.1.2/python/tests/conftest.py +26 -0
  20. gwm-3.1.2/python/tests/test_cli.py +44 -0
  21. gwm-3.1.2/python/tests/test_errors.py +54 -0
  22. gwm-3.1.2/python/tests/test_golden.py +62 -0
  23. gwm-3.1.2/python/tests/test_in_memory.py +31 -0
  24. gwm-3.1.2/python/tests/test_index_bytes.py +37 -0
  25. gwm-3.1.2/python/tests/test_roundtrip.py +49 -0
  26. gwm-3.1.2/src/Build.cpp +96 -0
  27. gwm-3.1.2/src/Graph.cpp +98 -0
  28. gwm-3.1.2/src/Makefile +32 -0
  29. gwm-3.1.2/src/Search.cpp +96 -0
  30. gwm-3.1.2/src/WLKernel.cpp +150 -0
  31. gwm-3.1.2/src/WLKernel.hpp +117 -0
  32. gwm-3.1.2/src/gWM.cpp +527 -0
  33. gwm-3.1.2/src/gWM.hpp +135 -0
  34. gwm-3.1.2/src/macros.h +26 -0
  35. gwm-3.1.2/src/popcount.h +15 -0
  36. gwm-3.1.2/src/rank9sel.cpp +354 -0
  37. gwm-3.1.2/src/rank9sel.h +95 -0
  38. gwm-3.1.2/test/bench.sh +33 -0
  39. gwm-3.1.2/test/golden/build-it2.txt +3 -0
  40. gwm-3.1.2/test/golden/build-it3.txt +3 -0
  41. gwm-3.1.2/test/golden/search-q08.txt +11 -0
  42. gwm-3.1.2/test/golden/search-q09it3.txt +11 -0
  43. gwm-3.1.2/test/golden/search-self06.txt +681 -0
  44. gwm-3.1.2/test/regress.sh +43 -0
@@ -0,0 +1,86 @@
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+ name: Wheels
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+
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+ on:
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+ push:
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+ branches: [main]
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+ tags: ["v*"]
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+ pull_request:
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+ workflow_dispatch:
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+
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+ concurrency:
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+ group: ${{ github.workflow }}-${{ github.ref }}
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+ cancel-in-progress: true
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+
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+ permissions:
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+ contents: read
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+
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+ jobs:
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+ wheels:
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+ name: wheels / ${{ matrix.os }}
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+ runs-on: ${{ matrix.os }}
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+ strategy:
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+ fail-fast: false
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+ matrix:
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+ include:
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+ # Linux: native runners, no QEMU cross-build.
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+ - os: ubuntu-24.04
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+ - os: ubuntu-24.04-arm
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+ # macOS: two single-arch runners rather than one universal2 build.
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+ # macos-15 is pinned (not macos-latest, which has moved to 26) so
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+ # the arm64 deployment target below doesn't silently drift.
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+ - os: macos-15-intel
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+ # cibuildwheel enforces 10.15 as the floor for the Python
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+ # versions we build here; 10.13 is silently bumped to 10.15 with
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+ # a warning, so declare the real value instead.
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+ macosx_deployment_target: "10.15"
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+ - os: macos-15
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+ macosx_deployment_target: "11.0"
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+ steps:
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+ - uses: actions/checkout@v4
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+
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+ - name: Build wheels
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+ uses: pypa/cibuildwheel@v4.1.0
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+ env:
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+ MACOSX_DEPLOYMENT_TARGET: ${{ matrix.macosx_deployment_target }}
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+
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+ - uses: actions/upload-artifact@v4
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+ with:
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+ name: wheels-${{ matrix.os }}
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+ path: wheelhouse/*.whl
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+
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+ sdist:
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+ name: sdist
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+ runs-on: ubuntu-24.04
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+ steps:
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+ - uses: actions/checkout@v4
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+ - uses: actions/setup-python@v5
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+ with:
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+ python-version: "3.x"
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+ - run: python -m pip install build
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+ - run: python -m build --sdist
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+ - uses: actions/upload-artifact@v4
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+ with:
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+ name: sdist
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+ path: dist/*.tar.gz
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+
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+ publish:
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+ name: Publish to PyPI
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+ needs: [wheels, sdist]
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+ runs-on: ubuntu-24.04
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+ if: startsWith(github.ref, 'refs/tags/v')
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+ environment:
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+ name: pypi
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+ url: https://pypi.org/p/gwm
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+ permissions:
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+ id-token: write
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+ steps:
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+ - uses: actions/download-artifact@v4
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+ with:
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+ pattern: wheels-*
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+ path: dist
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+ merge-multiple: true
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+ - uses: actions/download-artifact@v4
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+ with:
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+ name: sdist
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+ path: dist
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+ - uses: pypa/gh-action-pypi-publish@release/v1
gwm-3.1.2/.gitignore ADDED
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+ # Claude Code local runtime state and project instructions (not published)
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+ .claude/
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+ CLAUDE.md
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+
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+ # C++ build artifacts (src/Makefile)
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+ src/*.o
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+ src/*.d
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+ src/gwm-build
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+ src/gwm-search
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+ src/*.dSYM/
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+
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+ # CMake / scikit-build-core out-of-tree builds
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+ build/
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+ _skbuild/
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+
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+ # Python packaging
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+ dist/
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+ wheelhouse/
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+ *.egg-info/
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+ python/gwm/_core*.so
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+ python/gwm/_core*.pyd
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+
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+ # Python runtime
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+ __pycache__/
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+ *.pyc
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+ .pytest_cache/
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+ .venv/
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+ venv/
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+ cmake_minimum_required(VERSION 3.18)
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+ project(gwm VERSION 3.1.2 LANGUAGES CXX)
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+
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+ set(CMAKE_CXX_STANDARD 17)
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+ set(CMAKE_CXX_STANDARD_REQUIRED ON)
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+ set(CMAKE_CXX_EXTENSIONS OFF)
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+
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+ if(NOT CMAKE_BUILD_TYPE)
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+ set(CMAKE_BUILD_TYPE Release)
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+ endif()
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+
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+ include(CheckIPOSupported)
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+ check_ipo_supported(RESULT GWM_IPO_SUPPORTED OUTPUT _ipo_msg)
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+ if(GWM_IPO_SUPPORTED)
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+ set(CMAKE_INTERPROCEDURAL_OPTIMIZATION TRUE)
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+ endif()
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+
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+ # The CLI (make/plain cmake) build is unaffected unless this is turned on.
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+ option(GWM_BUILD_PYTHON "Build the gwm._core pybind11 extension module" OFF)
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+
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+ add_library(gwm_core STATIC
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+ src/Graph.cpp
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+ src/WLKernel.cpp
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+ src/gWM.cpp
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+ src/rank9sel.cpp
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+ )
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+ target_include_directories(gwm_core PUBLIC src)
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+ if(CMAKE_CXX_COMPILER_ID MATCHES "GNU|Clang")
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+ target_compile_options(gwm_core PRIVATE -Wall -Wextra)
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+ # rank9sel is vendored third-party code (sux); keep its warnings quiet.
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+ set_source_files_properties(src/rank9sel.cpp PROPERTIES
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+ COMPILE_OPTIONS "-Wno-sign-compare;-Wno-unused-private-field")
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+ endif()
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+
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+ add_executable(gwm-build src/Build.cpp)
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+ target_link_libraries(gwm-build PRIVATE gwm_core)
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+
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+ add_executable(gwm-search src/Search.cpp)
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+ target_link_libraries(gwm-search PRIVATE gwm_core)
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+
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+ # SKBUILD is set by scikit-build-core: the wheel ships only the _core
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+ # extension module (below), not these CLI binaries.
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+ if(NOT SKBUILD)
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+ install(TARGETS gwm-build gwm-search RUNTIME DESTINATION bin)
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+ endif()
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+
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+ if(GWM_BUILD_PYTHON)
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+ # gwm_core is a static library; it must be position-independent to be
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+ # linked into the _core.so extension module.
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+ set_target_properties(gwm_core PROPERTIES POSITION_INDEPENDENT_CODE ON)
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+
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+ find_package(Python 3.9 REQUIRED COMPONENTS Interpreter Development.Module)
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+ find_package(pybind11 CONFIG REQUIRED)
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+
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+ pybind11_add_module(_core python/bindings.cpp)
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+ target_link_libraries(_core PRIVATE gwm_core)
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+ target_compile_definitions(_core PRIVATE GWM_VERSION="${PROJECT_VERSION}")
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+
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+ install(TARGETS _core LIBRARY DESTINATION gwm)
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+ endif()
gwm-3.1.2/LICENSE ADDED
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+ MIT License
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+
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+ Copyright (c) 2013 Yasuo Tabei All Rights Reserved.
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+
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+ Permission is hereby granted, free of charge, to any person
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+ obtaining a copy of this software and associated documentation
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+ files (the "Software"), to deal in the Software without
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+ restriction, including without limitation the rights to use,
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+ copy, modify, merge, publish, distribute, sublicense, and/or sell
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+ copies of the Software, and to permit persons to whom the
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+ Software is furnished to do so, subject to the following
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+ conditions:
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+
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+ The above copyright notice and this permission notice shall be
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+ included in all copies or substantial portions of the Software.
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+
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+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
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+ EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
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+ OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
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+ NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
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+ HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
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+ WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
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+ FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
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+ OTHER DEALINGS IN THE SOFTWARE.