guts-base 0.8.4__tar.gz → 0.8.5__tar.gz

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Files changed (34) hide show
  1. {guts_base-0.8.4 → guts_base-0.8.5}/PKG-INFO +1 -1
  2. {guts_base-0.8.4 → guts_base-0.8.5}/guts_base/__init__.py +1 -1
  3. {guts_base-0.8.4 → guts_base-0.8.5}/guts_base/sim/ecx.py +3 -9
  4. {guts_base-0.8.4 → guts_base-0.8.5}/guts_base.egg-info/PKG-INFO +1 -1
  5. {guts_base-0.8.4 → guts_base-0.8.5}/pyproject.toml +2 -2
  6. {guts_base-0.8.4 → guts_base-0.8.5}/LICENSE +0 -0
  7. {guts_base-0.8.4 → guts_base-0.8.5}/README.md +0 -0
  8. {guts_base-0.8.4 → guts_base-0.8.5}/guts_base/data/__init__.py +0 -0
  9. {guts_base-0.8.4 → guts_base-0.8.5}/guts_base/data/expydb.py +0 -0
  10. {guts_base-0.8.4 → guts_base-0.8.5}/guts_base/data/generator.py +0 -0
  11. {guts_base-0.8.4 → guts_base-0.8.5}/guts_base/data/openguts.py +0 -0
  12. {guts_base-0.8.4 → guts_base-0.8.5}/guts_base/data/preprocessing.py +0 -0
  13. {guts_base-0.8.4 → guts_base-0.8.5}/guts_base/data/survival.py +0 -0
  14. {guts_base-0.8.4 → guts_base-0.8.5}/guts_base/data/time_of_death.py +0 -0
  15. {guts_base-0.8.4 → guts_base-0.8.5}/guts_base/data/utils.py +0 -0
  16. {guts_base-0.8.4 → guts_base-0.8.5}/guts_base/mod.py +0 -0
  17. {guts_base-0.8.4 → guts_base-0.8.5}/guts_base/plot.py +0 -0
  18. {guts_base-0.8.4 → guts_base-0.8.5}/guts_base/prob.py +0 -0
  19. {guts_base-0.8.4 → guts_base-0.8.5}/guts_base/sim/__init__.py +0 -0
  20. {guts_base-0.8.4 → guts_base-0.8.5}/guts_base/sim/base.py +0 -0
  21. {guts_base-0.8.4 → guts_base-0.8.5}/guts_base/sim/mempy.py +0 -0
  22. {guts_base-0.8.4 → guts_base-0.8.5}/guts_base/sim/report.py +0 -0
  23. {guts_base-0.8.4 → guts_base-0.8.5}/guts_base/sim.py +0 -0
  24. {guts_base-0.8.4 → guts_base-0.8.5}/guts_base.egg-info/SOURCES.txt +0 -0
  25. {guts_base-0.8.4 → guts_base-0.8.5}/guts_base.egg-info/dependency_links.txt +0 -0
  26. {guts_base-0.8.4 → guts_base-0.8.5}/guts_base.egg-info/entry_points.txt +0 -0
  27. {guts_base-0.8.4 → guts_base-0.8.5}/guts_base.egg-info/requires.txt +0 -0
  28. {guts_base-0.8.4 → guts_base-0.8.5}/guts_base.egg-info/top_level.txt +0 -0
  29. {guts_base-0.8.4 → guts_base-0.8.5}/setup.cfg +0 -0
  30. {guts_base-0.8.4 → guts_base-0.8.5}/tests/test_data_import.py +0 -0
  31. {guts_base-0.8.4 → guts_base-0.8.5}/tests/test_from_pymob.py +0 -0
  32. {guts_base-0.8.4 → guts_base-0.8.5}/tests/test_scripted_simulations.py +0 -0
  33. {guts_base-0.8.4 → guts_base-0.8.5}/tests/test_simulations.py +0 -0
  34. {guts_base-0.8.4 → guts_base-0.8.5}/tests/test_symbolic_solve.py +0 -0
{guts_base-0.8.4 → guts_base-0.8.5}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: guts_base
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- Version: 0.8.4
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+ Version: 0.8.5
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  Summary: Basic GUTS model implementation in pymob
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  Author-email: Florian Schunck <fluncki@protonmail.com>
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  License: GNU GENERAL PUBLIC LICENSE
{guts_base-0.8.4 → guts_base-0.8.5}/guts_base/__init__.py RENAMED
@@ -4,7 +4,7 @@ from . import data
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  from . import prob
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  from . import plot
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- __version__ = "0.8.4"
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+ __version__ = "0.8.5"
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  from .sim import (
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  GutsBase,
{guts_base-0.8.4 → guts_base-0.8.5}/guts_base/sim/ecx.py RENAMED
@@ -39,18 +39,12 @@ class ECxEstimator:
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  self.sim.model_parameters["x_in"] = x_in
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- # self.sim.observations = self.sim.expand_batch_like_coordinate_to_new_dimension(
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- # coordinate="exposure_path",
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- # variables=["Flupyradifurone"]
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- # )
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-
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- # self.sim.config.data_structure.remove("Flupyradifurone")
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-
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- # # TODO: COnstruct a sim if the input dims change
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- # self.sim.config.data_structure.exposure.dimensions = ["id", "time", "exposure_path"]
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  self.sim.config.data_structure.survival.observed = False
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  self.sim.observations = self.sim.observations.sel(id=self.sim.coordinates["id"])
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+ # fix time after observations have been set
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+ self.sim.coordinates["time"] = [time]
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+
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  self.sim.model_parameters["y0"] = self.sim.parse_input("y0", drop_dims="time")
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  self.sim.dispatch_constructor()
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{guts_base-0.8.4 → guts_base-0.8.5}/guts_base.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: guts_base
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- Version: 0.8.4
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+ Version: 0.8.5
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  Summary: Basic GUTS model implementation in pymob
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  Author-email: Florian Schunck <fluncki@protonmail.com>
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  License: GNU GENERAL PUBLIC LICENSE
{guts_base-0.8.4 → guts_base-0.8.5}/pyproject.toml RENAMED
@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
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  [project]
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  name = "guts_base"
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- version = "0.8.4"
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+ version = "0.8.5"
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  authors = [
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  { name="Florian Schunck", email="fluncki@protonmail.com" },
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  ]
@@ -49,7 +49,7 @@ import-openguts = "guts_base.data.openguts:create_database_and_import_data"
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  convert-time-of-death-to-openguts = "guts_base.data.time_of_death:time_of_death_to_openguts"
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  [tool.bumpver]
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- current_version = "0.8.4"
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+ current_version = "0.8.5"
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  version_pattern = "MAJOR.MINOR.PATCH[PYTAGNUM]"
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  commit_message = "bump version {old_version} -> {new_version}"
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  tag_message = "{new_version}"
{guts_base-0.8.4 → guts_base-0.8.5}/LICENSE RENAMED
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{guts_base-0.8.4 → guts_base-0.8.5}/README.md RENAMED
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{guts_base-0.8.4 → guts_base-0.8.5}/guts_base/mod.py RENAMED
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{guts_base-0.8.4 → guts_base-0.8.5}/guts_base/plot.py RENAMED
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{guts_base-0.8.4 → guts_base-0.8.5}/guts_base/prob.py RENAMED
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{guts_base-0.8.4 → guts_base-0.8.5}/guts_base/sim.py RENAMED
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{guts_base-0.8.4 → guts_base-0.8.5}/setup.cfg RENAMED
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