guts-base 0.8.3__tar.gz → 0.8.5__tar.gz

{guts_base-0.8.3 → guts_base-0.8.5}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: guts_base
-Version: 0.8.3
+Version: 0.8.5
 Summary: Basic GUTS model implementation in pymob
 Author-email: Florian Schunck <fluncki@protonmail.com>
 License:                     GNU GENERAL PUBLIC LICENSE

{guts_base-0.8.3 → guts_base-0.8.5}/guts_base/__init__.py

@@ -4,7 +4,7 @@ from . import data
 from . import prob
 from . import plot
 
-__version__ = "0.8.3"
+__version__ = "0.8.5"
 
 from .sim import (
     GutsBase,

{guts_base-0.8.3 → guts_base-0.8.5}/guts_base/sim/base.py

@@ -232,10 +232,10 @@ class GutsBase(SimulationBase):
         """
 
         if np.isnan(self.results_interpolation[0]):
-            self.results_interpolation[0] = self.observations["time"].min()
+            self.results_interpolation[0] = float(self.observations["time"].min())
         
         if np.isnan(self.results_interpolation[1]):
-            self.results_interpolation[1] = self.observations["time"].max()
+            self.results_interpolation[1] = float(self.observations["time"].max())
 
         # generate high resolution posterior predictions
         if self.results_interpolation is not None:

{guts_base-0.8.3 → guts_base-0.8.5}/guts_base/sim/ecx.py

@@ -39,18 +39,12 @@ class ECxEstimator:
 
         self.sim.model_parameters["x_in"] = x_in
 
-        # self.sim.observations = self.sim.expand_batch_like_coordinate_to_new_dimension(
-        #     coordinate="exposure_path",
-        #     variables=["Flupyradifurone"]
-        # )
-
-        # self.sim.config.data_structure.remove("Flupyradifurone")
-
-        # # TODO: COnstruct a sim if the input dims change
-        # self.sim.config.data_structure.exposure.dimensions = ["id", "time", "exposure_path"]
         self.sim.config.data_structure.survival.observed = False
         self.sim.observations = self.sim.observations.sel(id=self.sim.coordinates["id"])
 
+        # fix time after observations have been set
+        self.sim.coordinates["time"] = [time]
+
         self.sim.model_parameters["y0"] = self.sim.parse_input("y0", drop_dims="time")
         self.sim.dispatch_constructor()
 

{guts_base-0.8.3 → guts_base-0.8.5}/guts_base.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: guts_base
-Version: 0.8.3
+Version: 0.8.5
 Summary: Basic GUTS model implementation in pymob
 Author-email: Florian Schunck <fluncki@protonmail.com>
 License:                     GNU GENERAL PUBLIC LICENSE

{guts_base-0.8.3 → guts_base-0.8.5}/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "guts_base"
-version = "0.8.3"
+version = "0.8.5"
 authors = [
   { name="Florian Schunck", email="fluncki@protonmail.com" },
 ]
@@ -49,7 +49,7 @@ import-openguts = "guts_base.data.openguts:create_database_and_import_data"
 convert-time-of-death-to-openguts = "guts_base.data.time_of_death:time_of_death_to_openguts"
 
 [tool.bumpver]
-current_version = "0.8.3"
+current_version = "0.8.5"
 version_pattern = "MAJOR.MINOR.PATCH[PYTAGNUM]"
 commit_message = "bump version {old_version} -> {new_version}"
 tag_message = "{new_version}"