guts-base 0.8.2__tar.gz → 0.8.4__tar.gz

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Files changed (34) hide show
  1. {guts_base-0.8.2 → guts_base-0.8.4}/PKG-INFO +2 -2
  2. {guts_base-0.8.2 → guts_base-0.8.4}/guts_base/__init__.py +1 -1
  3. {guts_base-0.8.2 → guts_base-0.8.4}/guts_base/sim/base.py +2 -2
  4. {guts_base-0.8.2 → guts_base-0.8.4}/guts_base.egg-info/PKG-INFO +2 -2
  5. {guts_base-0.8.2 → guts_base-0.8.4}/guts_base.egg-info/requires.txt +1 -1
  6. {guts_base-0.8.2 → guts_base-0.8.4}/pyproject.toml +3 -3
  7. {guts_base-0.8.2 → guts_base-0.8.4}/LICENSE +0 -0
  8. {guts_base-0.8.2 → guts_base-0.8.4}/README.md +0 -0
  9. {guts_base-0.8.2 → guts_base-0.8.4}/guts_base/data/__init__.py +0 -0
  10. {guts_base-0.8.2 → guts_base-0.8.4}/guts_base/data/expydb.py +0 -0
  11. {guts_base-0.8.2 → guts_base-0.8.4}/guts_base/data/generator.py +0 -0
  12. {guts_base-0.8.2 → guts_base-0.8.4}/guts_base/data/openguts.py +0 -0
  13. {guts_base-0.8.2 → guts_base-0.8.4}/guts_base/data/preprocessing.py +0 -0
  14. {guts_base-0.8.2 → guts_base-0.8.4}/guts_base/data/survival.py +0 -0
  15. {guts_base-0.8.2 → guts_base-0.8.4}/guts_base/data/time_of_death.py +0 -0
  16. {guts_base-0.8.2 → guts_base-0.8.4}/guts_base/data/utils.py +0 -0
  17. {guts_base-0.8.2 → guts_base-0.8.4}/guts_base/mod.py +0 -0
  18. {guts_base-0.8.2 → guts_base-0.8.4}/guts_base/plot.py +0 -0
  19. {guts_base-0.8.2 → guts_base-0.8.4}/guts_base/prob.py +0 -0
  20. {guts_base-0.8.2 → guts_base-0.8.4}/guts_base/sim/__init__.py +0 -0
  21. {guts_base-0.8.2 → guts_base-0.8.4}/guts_base/sim/ecx.py +0 -0
  22. {guts_base-0.8.2 → guts_base-0.8.4}/guts_base/sim/mempy.py +0 -0
  23. {guts_base-0.8.2 → guts_base-0.8.4}/guts_base/sim/report.py +0 -0
  24. {guts_base-0.8.2 → guts_base-0.8.4}/guts_base/sim.py +0 -0
  25. {guts_base-0.8.2 → guts_base-0.8.4}/guts_base.egg-info/SOURCES.txt +0 -0
  26. {guts_base-0.8.2 → guts_base-0.8.4}/guts_base.egg-info/dependency_links.txt +0 -0
  27. {guts_base-0.8.2 → guts_base-0.8.4}/guts_base.egg-info/entry_points.txt +0 -0
  28. {guts_base-0.8.2 → guts_base-0.8.4}/guts_base.egg-info/top_level.txt +0 -0
  29. {guts_base-0.8.2 → guts_base-0.8.4}/setup.cfg +0 -0
  30. {guts_base-0.8.2 → guts_base-0.8.4}/tests/test_data_import.py +0 -0
  31. {guts_base-0.8.2 → guts_base-0.8.4}/tests/test_from_pymob.py +0 -0
  32. {guts_base-0.8.2 → guts_base-0.8.4}/tests/test_scripted_simulations.py +0 -0
  33. {guts_base-0.8.2 → guts_base-0.8.4}/tests/test_simulations.py +0 -0
  34. {guts_base-0.8.2 → guts_base-0.8.4}/tests/test_symbolic_solve.py +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: guts_base
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- Version: 0.8.2
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+ Version: 0.8.4
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  Summary: Basic GUTS model implementation in pymob
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  Author-email: Florian Schunck <fluncki@protonmail.com>
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  License: GNU GENERAL PUBLIC LICENSE
@@ -692,7 +692,7 @@ License-File: LICENSE
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  Requires-Dist: openpyxl>=3.1.3
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  Requires-Dist: Bottleneck>=1.5.0
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  Requires-Dist: expydb>=0.6.0
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- Requires-Dist: mempy>=1.5.0
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+ Requires-Dist: mempyguts>=1.5.0
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  Requires-Dist: pymob[numpyro]<1.0.0,>=0.4.1
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  Provides-Extra: dev
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  Requires-Dist: pytest>=7.3; extra == "dev"
@@ -4,7 +4,7 @@ from . import data
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  from . import prob
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  from . import plot
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- __version__ = "0.8.2"
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+ __version__ = "0.8.4"
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  from .sim import (
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  GutsBase,
@@ -232,10 +232,10 @@ class GutsBase(SimulationBase):
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  """
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  if np.isnan(self.results_interpolation[0]):
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- self.results_interpolation[0] = self.observations["time"].min()
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+ self.results_interpolation[0] = float(self.observations["time"].min())
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  if np.isnan(self.results_interpolation[1]):
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- self.results_interpolation[1] = self.observations["time"].max()
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+ self.results_interpolation[1] = float(self.observations["time"].max())
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  # generate high resolution posterior predictions
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  if self.results_interpolation is not None:
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: guts_base
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- Version: 0.8.2
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+ Version: 0.8.4
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  Summary: Basic GUTS model implementation in pymob
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  Author-email: Florian Schunck <fluncki@protonmail.com>
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  License: GNU GENERAL PUBLIC LICENSE
@@ -692,7 +692,7 @@ License-File: LICENSE
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  Requires-Dist: openpyxl>=3.1.3
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  Requires-Dist: Bottleneck>=1.5.0
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  Requires-Dist: expydb>=0.6.0
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- Requires-Dist: mempy>=1.5.0
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+ Requires-Dist: mempyguts>=1.5.0
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  Requires-Dist: pymob[numpyro]<1.0.0,>=0.4.1
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  Provides-Extra: dev
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  Requires-Dist: pytest>=7.3; extra == "dev"
@@ -1,7 +1,7 @@
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  openpyxl>=3.1.3
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  Bottleneck>=1.5.0
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  expydb>=0.6.0
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- mempy>=1.5.0
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+ mempyguts>=1.5.0
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  pymob[numpyro]<1.0.0,>=0.4.1
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  [dev]
@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
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  [project]
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  name = "guts_base"
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- version = "0.8.2"
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+ version = "0.8.4"
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  authors = [
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  { name="Florian Schunck", email="fluncki@protonmail.com" },
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  ]
@@ -15,7 +15,7 @@ dependencies=[
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  "openpyxl >= 3.1.3",
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  "Bottleneck >= 1.5.0",
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  "expydb >= 0.6.0",
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- "mempy >= 1.5.0",
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+ "mempyguts >= 1.5.0",
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  "pymob[numpyro] >= 0.4.1, < 1.0.0"
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  ]
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  license = {file = "LICENSE"}
@@ -49,7 +49,7 @@ import-openguts = "guts_base.data.openguts:create_database_and_import_data"
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  convert-time-of-death-to-openguts = "guts_base.data.time_of_death:time_of_death_to_openguts"
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  [tool.bumpver]
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- current_version = "0.8.2"
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+ current_version = "0.8.4"
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  version_pattern = "MAJOR.MINOR.PATCH[PYTAGNUM]"
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  commit_message = "bump version {old_version} -> {new_version}"
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  tag_message = "{new_version}"
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