guidelinely 1.0.3__tar.gz

guidelinely-1.0.3/.github/workflows/ci.yml

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+name: CI
+
+on:
+  push:
+    branches: [ main ]
+    tags: [ 'v*' ]  # Run on version tags
+  pull_request:
+    branches: [ main ]
+
+jobs:
+  test:
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: ["3.9", "3.10", "3.11", "3.12"]
+
+    steps:
+    - uses: actions/checkout@v4
+
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v5
+      with:
+        python-version: ${{ matrix.python-version }}
+
+    - name: Cache pip dependencies
+      uses: actions/cache@v4
+      with:
+        path: ~/.cache/pip
+        key: ${{ runner.os }}-pip-${{ matrix.python-version }}-${{ hashFiles('**/pyproject.toml') }}
+        restore-keys: |
+          ${{ runner.os }}-pip-${{ matrix.python-version }}-
+          ${{ runner.os }}-pip-
+
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        pip install -e ".[dev]"
+
+    - name: Run tests with coverage
+      run: |
+        pytest --cov=guidelinely --cov-report=xml --cov-report=term-missing
+
+    - name: Upload coverage to Codecov
+      uses: codecov/codecov-action@v4
+      with:
+        file: ./coverage.xml
+        flags: unittests
+        name: codecov-umbrella
+        fail_ci_if_error: false
+
+  lint:
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v4
+
+    - name: Set up Python
+      uses: actions/setup-python@v5
+      with:
+        python-version: "3.11"
+
+    - name: Cache pip dependencies
+      uses: actions/cache@v4
+      with:
+        path: ~/.cache/pip
+        key: ${{ runner.os }}-pip-lint-${{ hashFiles('**/pyproject.toml') }}
+        restore-keys: |
+          ${{ runner.os }}-pip-lint-
+          ${{ runner.os }}-pip-
+
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        pip install -e ".[dev]"
+
+    - name: Check formatting with Black
+      run: black --check guidelinely/ tests/
+
+    - name: Lint with Ruff
+      run: ruff check guidelinely/ tests/
+
+    - name: Type check with MyPy
+      run: mypy guidelinely/
+
+  build:
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v4
+
+    - name: Set up Python
+      uses: actions/setup-python@v5
+      with:
+        python-version: "3.11"
+
+    - name: Install build dependencies
+      run: |
+        python -m pip install --upgrade pip
+        pip install build
+
+    - name: Build package
+      run: python -m build
+
+    - name: Check build artifacts
+      run: ls -la dist/
+
+    - name: Upload build artifacts
+      uses: actions/upload-artifact@v4
+      with:
+        name: dist
+        path: dist/
+
+  publish:
+    runs-on: ubuntu-latest
+    needs: [test, lint, build]
+    if: startsWith(github.ref, 'refs/tags/v')  # Only publish on version tags
+    permissions:
+      id-token: write  # Required for trusted publishing
+    steps:
+    - name: Download build artifacts
+      uses: actions/download-artifact@v4
+      with:
+        name: dist
+        path: dist/
+
+    - name: Publish to PyPI
+      uses: pypa/gh-action-pypi-publish@release/v1

guidelinely-1.0.3/.gitignore

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+# Python
+__pycache__/
+*.py[cod]
+*$py.class
+*.so
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+
+# Virtual environments
+venv/
+env/
+ENV/
+.venv
+
+# Testing
+.pytest_cache/
+.coverage
+htmlcov/
+.tox/
+
+# IDE
+.vscode/
+.idea/
+*.swp
+*.swo
+*~
+
+# Type checking
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# R reference (temporary)
+r_reference/
+
+# OS
+.DS_Store
+Thumbs.db
+*ipynb

guidelinely-1.0.3/.pre-commit-config.yaml

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+repos:
+  - repo: https://github.com/psf/black
+    rev: 24.10.0
+    hooks:
+      - id: black
+        args: [--check, --line-length=100]
+        files: ^(guidelinely|tests)/
+        exclude: ^guidelinely/_version\.py$
+
+  - repo: https://github.com/astral-sh/ruff-pre-commit
+    rev: v0.8.1
+    hooks:
+      - id: ruff
+        files: ^(guidelinely|tests)/
+
+  - repo: https://github.com/pre-commit/mirrors-mypy
+    rev: v1.13.0
+    hooks:
+      - id: mypy
+        files: ^guidelinely/
+        additional_dependencies:
+          - httpx>=0.25.0
+          - pydantic>=2.0.0
+          - diskcache>=5.6.0
+
+  - repo: local
+    hooks:
+      - id: pytest
+        name: pytest
+        entry: pytest --cov=guidelinely --cov-report=term-missing
+        language: system
+        types: [python]
+        pass_filenames: false
+        always_run: true

guidelinely-1.0.3/LICENSE

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+MIT License
+
+Copyright (c) 2025 Guidelinely Contributors
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

guidelinely-1.0.3/PKG-INFO

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+Metadata-Version: 2.4
+Name: guidelinely
+Version: 1.0.3
+Summary: Python client for the Guidelinely Environmental Guidelines API
+Author-email: Michael Davison <michael.davison@gmail.com>
+License-Expression: MIT
+Project-URL: Homepage, https://github.com/mpdavison/guidelinely-python
+Project-URL: Documentation, https://guidelines.1681248.com/docs
+Project-URL: Repository, https://github.com/mpdavison/guidelinely-python
+Project-URL: Bug Tracker, https://github.com/mpdavison/guidelinely-python/issues
+Keywords: environmental,guidelines,api,water quality,soil,sediment
+Classifier: Development Status :: 3 - Alpha
+Classifier: Intended Audience :: Science/Research
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.9
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Topic :: Scientific/Engineering
+Requires-Python: >=3.9
+Description-Content-Type: text/markdown
+License-File: LICENSE
+Requires-Dist: httpx>=0.25.0
+Requires-Dist: pydantic>=2.0.0
+Requires-Dist: diskcache>=5.6.0
+Provides-Extra: dev
+Requires-Dist: pytest>=7.0.0; extra == "dev"
+Requires-Dist: pytest-asyncio>=0.21.0; extra == "dev"
+Requires-Dist: pytest-cov>=4.0.0; extra == "dev"
+Requires-Dist: pytest-httpx>=0.30.0; extra == "dev"
+Requires-Dist: responses>=0.23.0; extra == "dev"
+Requires-Dist: black>=23.0.0; extra == "dev"
+Requires-Dist: mypy>=1.0.0; extra == "dev"
+Requires-Dist: ruff>=0.1.0; extra == "dev"
+Requires-Dist: pre-commit>=3.0.0; extra == "dev"
+Dynamic: license-file
+
+# Guidelinely Python Client
+
+[![Python 3.9+](https://img.shields.io/badge/python-3.9+-blue.svg)](https://www.python.org/downloads/)
+[![License: MIT](https://img.shields.io/badge/License-MIT-yellow.svg)](https://opensource.org/licenses/MIT)
+
+Python client library for the [Guidelinely API](https://guidelines.1681248.com/docs) - an environmental guideline calculation and search API.
+
+Calculate context-dependent environmental guideline values for chemical parameters (Aluminum, Copper, Lead, etc.) in various media (water, soil, sediment) based on environmental conditions (pH, hardness, temperature, etc.).
+
+This Python client mirrors the functionality of the [R client](https://github.com/mpdavison/envguidelines).
+
+## Features
+
+
+- ✅ **Metadata Queries**: List parameters, search, explore media types and sources
+- ✅ **Single Calculations**: Calculate guidelines for individual parameters
+- ✅ **Batch Calculations**: Efficiently calculate multiple parameters (up to 50)
+- ✅ **Context-Aware**: Support for pH, hardness, temperature, and other environmental factors
+- ✅ **Unit Conversion**: Optional target unit specification
+- ✅ **Type Safety**: Full Pydantic model support for request/response validation
+- ✅ **Comprehensive Tests**: Mock-based test suite with responses library
+
+## Installation
+
+```bash
+# Clone the repository
+git clone https://github.com/mpdavison/guidelinely-python.git
+cd guidelinely-python
+
+# Install in development mode
+pip install -e .
+
+# Or install with dev dependencies
+pip install -e ".[dev]"
+```
+
+## Quick Start
+
+```python
+from guidelinely import calculate_guidelines
+
+# Calculate aluminum guidelines in surface water
+result = calculate_guidelines(
+    parameter="Aluminum",
+    media="surface_water",
+    context={
+        "pH": "7.0 1",           # pH 7.0 (dimensionless)
+        "hardness": "100 mg/L"   # Water hardness as CaCO3
+    }
+)
+
+print(f"Found {result.total_count} guidelines")
+for guideline in result.results:
+    print(f"{guideline.parameter}: {guideline.value} ({guideline.source})")
+```
+
+## API Key
+
+Calculation endpoints optionally accept an API key. Set it as an environment variable:
+
+```bash
+export GUIDELINELY_API_KEY="your_api_key_here"
+```
+
+Metadata endpoints (list parameters, search, etc.) work without authentication.
+
+## Usage Examples
+
+### Basic Metadata Queries
+
+```python
+from guidelinely import (
+    health_check,
+    list_parameters,
+    search_parameters,
+    list_media,
+    list_sources,
+    get_stats,
+)
+
+# Check API health
+status = health_check()
+
+# List all chemical parameters
+params = list_parameters()
+print(f"Available parameters: {len(params)}")
+
+# Search for ammonia-related parameters
+ammonia = search_parameters("ammon")
+print(ammonia)  # ['Ammonia', 'Ammonium', ...]
+
+# Get available media types
+media = list_media()
+# {'surface_water': 'Surface Water', 'soil': 'Soil', ...}
+
+# View guideline sources
+sources = list_sources()
+
+# Database statistics
+stats = get_stats()
+```
+
+### Single Parameter Calculation
+
+```python
+from guidelinely import calculate_guidelines
+import os
+
+os.environ["GUIDELINELY_API_KEY"] = "your_key"
+
+result = calculate_guidelines(
+    parameter="Copper",
+    media="surface_water",
+    context={
+        "pH": "7.5 1",
+        "hardness": "150 mg/L",
+        "temperature": "15 °C",
+        "chloride": "75 mg/L"
+    },
+    target_unit="μg/L"  # Optional unit conversion
+)
+
+# Filter results
+chronic_aquatic = [
+    g for g in result.results
+    if g.receptor == "Aquatic Life" and g.exposure_duration == "chronic"
+]
+```
+
+### Batch Calculations
+
+```python
+from guidelinely import calculate_batch
+
+# Calculate multiple parameters at once (more efficient)
+result = calculate_batch(
+    parameters=["Aluminum", "Copper", "Lead", "Zinc", "Cadmium"],
+    media="surface_water",
+    context={
+        "pH": "7.5 1",
+        "hardness": "150 mg/L",
+        "temperature": "15 °C"
+    }
+)
+
+print(f"Total: {result.total_count} guidelines")
+
+# With per-parameter unit conversion
+result = calculate_batch(
+    parameters=[
+        "Aluminum",
+        {"name": "Copper", "target_unit": "μg/L"},
+        {"name": "Lead", "target_unit": "mg/L"}
+    ],
+    media="surface_water",
+    context={"pH": "7.0 1", "hardness": "100 mg/L"}
+)
+```
+
+### Soil Calculations
+
+```python
+result = calculate_guidelines(
+    parameter="Lead",
+    media="soil",
+    context={
+        "pH": "6.5 1",
+        "organic_matter": "3.5 %",
+        "cation_exchange_capacity": "15 meq/100g"
+    }
+)
+```
+
+## Environmental Context Parameters
+
+All context parameters **must be strings with units** (Pint format):
+
+### Water (surface_water, groundwater)
+```python
+context = {
+    "pH": "7.0 1",           # Dimensionless - use "1" as unit
+    "hardness": "100 mg/L",  # mg/L as CaCO3
+    "temperature": "20 °C",
+    "chloride": "50 mg/L"
+}
+```
+
+### Soil
+```python
+context = {
+    "pH": "6.5 1",
+    "organic_matter": "3.5 %",
+    "cation_exchange_capacity": "15 meq/100g"
+}
+```
+
+### Sediment
+```python
+context = {
+    "pH": "7.0 1",
+    "organic_matter": "2.5 %",
+    "grain_size": "0.5 mm"
+}
+```
+
+## Data Models
+
+The library uses Pydantic for type-safe data handling:
+
+```python
+from guidelinely.models import GuidelineResponse, CalculationResponse
+
+# All API responses are strongly typed
+result: CalculationResponse = calculate_guidelines(...)
+
+# Access typed fields
+for guideline in result.results:
+    guideline.parameter  # str
+    guideline.value      # str (PostgreSQL unitrange format)
+    guideline.lower      # Optional[float]
+    guideline.upper      # Optional[float]
+    guideline.unit       # str
+    guideline.is_calculated  # bool
+```
+
+## Guideline Value Format
+
+Guidelines use PostgreSQL `unitrange` format:
+- `[10 μg/L,100 μg/L]` - Range from 10 to 100 μg/L
+- `(,87.0 μg/L]` - Upper limit only (≤87.0 μg/L)
+- `[5.0 mg/L,)` - Lower limit only (≥5.0 mg/L)
+
+Parsed into `lower`, `upper`, and `unit` fields.
+
+## Development
+
+```bash
+# Install development dependencies
+pip install -e ".[dev]"
+
+# Run tests
+pytest
+
+# Run tests with coverage
+pytest --cov=guidelinely --cov-report=html
+
+# Format code
+black guidelinely/ tests/ examples/
+
+# Type checking
+mypy guidelinely/
+
+# Linting
+ruff check guidelinely/ tests/
+```
+
+## API Reference
+
+### Client Functions
+
+- `health_check()` - Service health check
+- `readiness_check()` - Database readiness check
+- `list_parameters()` - List all chemical parameters
+- `search_parameters(q, media)` - Search parameters
+- `list_media()` - List media types
+- `list_sources()` - List guideline sources
+- `get_stats()` - Database statistics
+- `calculate_guidelines(parameter, media, context, target_unit, api_key)` - Calculate single parameter
+- `calculate_batch(parameters, media, context, api_key)` - Batch calculate (max 50 parameters)
+
+### Models
+
+- `GuidelineResponse` - Single guideline result
+- `CalculationResponse` - Calculation endpoint response
+- `CalculateRequest` - Single calculation request body
+- `BatchCalculateRequest` - Batch calculation request body
+
+## Examples
+
+See the `examples/` directory for complete working examples:
+
+1. `01_basic_metadata.py` - Basic metadata queries
+2. `02_calculate_single_parameter.py` - Single parameter calculations
+3. `03_batch_calculations.py` - Batch calculations
+4. `04_soil_calculations.py` - Soil-specific calculations
+5. `05_advanced_workflow.py` - Advanced filtering and analysis
+
+## Resources
+
+- **API Documentation**: https://guidelines.1681248.com/docs
+- **OpenAPI Spec**: https://guidelines.1681248.com/openapi.json
+- **R Client**: https://github.com/mpdavison/envguidelines
+- **Issue Tracker**: https://github.com/mpdavison/guidelinely-python/issues
+
+## License
+
+MIT License - see [LICENSE](LICENSE) file for details.
+
+## Contributing
+
+Contributions are welcome! Please feel free to submit a Pull Request.