gsppy 3.0.0__tar.gz → 3.0.1__tar.gz

{gsppy-3.0.0 → gsppy-3.0.1}/CHANGELOG.md

@@ -1,5 +1,122 @@
 # Changelog
 
+## [v3.0.0] - 2025-09-14
+
+### **New Features**
+
+* **Acceleration Backends Introduced**:
+
+  * **Rust Backend**: Fast, parallelized subsequence matching using PyO3 + Rayon.
+  * **GPU Backend (Experimental)**: Singleton (`k=1`) support counting accelerated via CuPy.
+* **Unified Backend Selection**:
+
+  * Backend can be selected via:
+
+    * Python API (`backend="auto" | "rust" | "gpu" | "python"`)
+    * CLI (`--backend`)
+    * Environment variable (`GSPPY_BACKEND`)
+  * Default: `auto` (tries Rust, falls back to Python).
+* **Optional GPU Install**:
+
+  * Install with `pip install "gsppy[gpu]"` for CuPy support.
+
+### **CLI and API Enhancements**
+
+* Updated CLI to support `--backend` option.
+* Python API `GSP.search()` accepts `backend=` parameter for runtime selection.
+* Environment variable fallback documented and supported.
+
+### **Documentation Updates**
+
+* **README.md** updated:
+
+  * New “GPU Acceleration” section with installation/usage guidance.
+  * Backend selector documentation for CLI, API, and env var.
+  * Python version compatibility badge updated to 3.10+.
+* **CONTRIBUTING.md**:
+
+  * Rewritten with new setup instructions using `uv` and `Makefile`.
+  * Added pre-commit and `tox-uv` instructions.
+
+### **Tooling and Developer Experience**
+
+* **Migrated Tooling**:
+
+  * Moved from Rye to `uv` for dependency and environment management.
+  * Introduced `uv.lock` for reproducible, cross-version installations.
+* **Makefile**:
+
+  * Common targets added (`make setup`, `make install`, `make lint`, etc.).
+  * One-liner for full dev bootstrap: `make setup && make install && make pre-commit-install`
+* **Pre-commit hooks**:
+
+  * Added `.pre-commit-config.yaml` with `ruff`, `pyright`, and `pytest`.
+* **DevContainer Support**:
+
+  * Added `devcontainer.json` for VS Code one-click environment provisioning.
+
+### **Testing and Quality**
+
+* Test suite fully adapted to new tooling (`uv`, `tox-uv`).
+* Static typing validated with both `mypy` and `pyright`.
+* All 38 tests pass locally and in CI (Python 3.10–3.13).
+
+### **CI/CD and Infrastructure**
+
+* GitHub Actions updated:
+
+  * All jobs use `uv` for setup and execution.
+  * `tox` now powered by `tox-uv`, auto-provisions interpreters.
+* Updated testing matrix in `codecov.yml` to Python 3.13.
+* Simplified CI jobs by consolidating environment setup steps.
+
+### **Packaging & Compatibility**
+
+* Dropped Python 3.8 and 3.9 support:
+
+  * Project now requires Python **3.10+**.
+* `pyproject.toml` updated:
+
+  * `requires-python = ">=3.10"`
+  * Optional `[gpu]` extra defined for CuPy support.
+  * Development dependencies and classifiers modernized.
+
+### **Code Improvements**
+
+* Improved type hints and formatting in:
+
+  * `gsp.py`, `cli.py`, and `utils.py`
+* Lint fixes and logging improvements.
+* Code follows unified `ruff` formatting.
+
+### **Breaking Changes**
+
+* 🔥 Dropped support for Python 3.8 and 3.9.
+
+  * Users must upgrade to Python 3.10 or newer.
+
+### **Migration Guide**
+
+For contributors or CI environments:
+
+```bash
+# Install uv (first time only)
+curl -Ls https://astral.sh/uv/install.sh | bash
+
+# Setup new local dev environment
+make setup
+make install
+make pre-commit-install
+```
+
+### **Performance Notes**
+
+* **GPU acceleration** boosts singleton (k=1) counting using CuPy’s `bincount`.
+* **Rust backend** delivers robust multithreaded subsequence matching.
+* Backend auto-dispatch adapts based on availability and selection.
+
+---
+
 ## [v2.3.0] - 2025-01-05
 
 ### **New Features**

{gsppy-3.0.0 → gsppy-3.0.1}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: gsppy
-Version: 3.0.0
+Version: 3.0.1
 Summary: GSP (Generalized Sequence Pattern) algorithm in Python
 Project-URL: Homepage, https://github.com/jacksonpradolima/gsp-py
 Author-email: Jackson Antonio do Prado Lima <jacksonpradolima@gmail.com>
@@ -42,20 +42,20 @@ Requires-Python: >=3.10
 Requires-Dist: click>=8.0.0
 Provides-Extra: dev
 Requires-Dist: cython==3.1.3; extra == 'dev'
-Requires-Dist: hatch==1.14.0; extra == 'dev'
+Requires-Dist: hatch==1.14.1; extra == 'dev'
 Requires-Dist: hatchling==1.27.0; extra == 'dev'
 Requires-Dist: mypy==1.18.1; extra == 'dev'
-Requires-Dist: pylint==3.2.7; extra == 'dev'
+Requires-Dist: pylint==3.3.8; extra == 'dev'
 Requires-Dist: pyright==1.1.405; extra == 'dev'
 Requires-Dist: pytest-benchmark==5.1.0; extra == 'dev'
-Requires-Dist: pytest-cov==5.0.0; extra == 'dev'
-Requires-Dist: pytest==8.3.4; extra == 'dev'
+Requires-Dist: pytest-cov==7.0.0; extra == 'dev'
+Requires-Dist: pytest==8.4.2; extra == 'dev'
 Requires-Dist: ruff==0.13.0; extra == 'dev'
 Requires-Dist: tox==4.30.2; extra == 'dev'
 Provides-Extra: gpu
 Requires-Dist: cupy<14,>=11; extra == 'gpu'
 Provides-Extra: rust
-Requires-Dist: maturin==1.6.0; extra == 'rust'
+Requires-Dist: maturin==1.9.4; extra == 'rust'
 Description-Content-Type: text/markdown
 
 [![PyPI License](https://img.shields.io/pypi/l/gsppy.svg?style=flat-square)]()

{gsppy-3.0.0 → gsppy-3.0.1}/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "hatchling.build"
 
 [project]
 name = "gsppy"
-version = "3.0.0"
+version = "3.0.1"
 description = "GSP (Generalized Sequence Pattern) algorithm in Python"
 keywords = ["GSP", "sequential patterns", "data analysis", "sequence mining"]
 license = { file = "LICENSE" }
@@ -40,19 +40,19 @@ gsppy = "gsppy.cli:main"
 [project.optional-dependencies]
 dev = [
     "cython==3.1.3",
-    "hatch==1.14.0",
+    "hatch==1.14.1",
     "hatchling==1.27.0",
     "mypy==1.18.1",
-    "pylint==3.2.7",
+    "pylint==3.3.8",
     "pyright==1.1.405",
-    "pytest==8.3.4",
+    "pytest==8.4.2",
     "pytest-benchmark==5.1.0",
-    "pytest-cov==5.0.0",
+    "pytest-cov==7.0.0",
     "ruff==0.13.0",
     "tox==4.30.2",
 ]
 rust = [
-    "maturin==1.6.0"
+    "maturin==1.9.4"
 ]
 gpu = [
     "cupy>=11,<14"