gsMap 1.70__tar.gz → 1.71__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (76) hide show
  1. {gsmap-1.70 → gsmap-1.71}/PKG-INFO +1 -1
  2. {gsmap-1.70 → gsmap-1.71}/src/gsMap/__init__.py +1 -1
  3. {gsmap-1.70 → gsmap-1.71}/src/gsMap/find_latent_representation.py +1 -1
  4. {gsmap-1.70 → gsmap-1.71}/.github/workflows/publish-to-pypi.yml +0 -0
  5. {gsmap-1.70 → gsmap-1.71}/.gitignore +0 -0
  6. {gsmap-1.70 → gsmap-1.71}/LICENSE +0 -0
  7. {gsmap-1.70 → gsmap-1.71}/README.md +0 -0
  8. {gsmap-1.70 → gsmap-1.71}/docs/Makefile +0 -0
  9. {gsmap-1.70 → gsmap-1.71}/docs/make.bat +0 -0
  10. {gsmap-1.70 → gsmap-1.71}/docs/requirements.txt +0 -0
  11. {gsmap-1.70 → gsmap-1.71}/docs/source/_static/schematic.svg +0 -0
  12. {gsmap-1.70 → gsmap-1.71}/docs/source/api/cauchy_combination.rst +0 -0
  13. {gsmap-1.70 → gsmap-1.71}/docs/source/api/find_latent_representations.rst +0 -0
  14. {gsmap-1.70 → gsmap-1.71}/docs/source/api/format_sumstats.rst +0 -0
  15. {gsmap-1.70 → gsmap-1.71}/docs/source/api/generate_ldscore.rst +0 -0
  16. {gsmap-1.70 → gsmap-1.71}/docs/source/api/latent_to_gene.rst +0 -0
  17. {gsmap-1.70 → gsmap-1.71}/docs/source/api/quick_mode.rst +0 -0
  18. {gsmap-1.70 → gsmap-1.71}/docs/source/api/report.rst +0 -0
  19. {gsmap-1.70 → gsmap-1.71}/docs/source/api/spatial_ldsc.rst +0 -0
  20. {gsmap-1.70 → gsmap-1.71}/docs/source/api.rst +0 -0
  21. {gsmap-1.70 → gsmap-1.71}/docs/source/charts/cortex/Cortex_151507_Height.json +0 -0
  22. {gsmap-1.70 → gsmap-1.71}/docs/source/charts/cortex/Cortex_151507_IQ.json +0 -0
  23. {gsmap-1.70 → gsmap-1.71}/docs/source/charts/cortex/Cortex_151507_MCHC.json +0 -0
  24. {gsmap-1.70 → gsmap-1.71}/docs/source/charts/cortex/Cortex_151507_SCZ.json +0 -0
  25. {gsmap-1.70 → gsmap-1.71}/docs/source/charts/mouse_embryo/E16.5_E1S1_Height.json +0 -0
  26. {gsmap-1.70 → gsmap-1.71}/docs/source/charts/mouse_embryo/E16.5_E1S1_IQ.json +0 -0
  27. {gsmap-1.70 → gsmap-1.71}/docs/source/charts/mouse_embryo/E16.5_E1S1_MCHC.json +0 -0
  28. {gsmap-1.70 → gsmap-1.71}/docs/source/charts/mouse_embryo/E16.5_E1S1_SCZ.json +0 -0
  29. {gsmap-1.70 → gsmap-1.71}/docs/source/charts/test.json +0 -0
  30. {gsmap-1.70 → gsmap-1.71}/docs/source/conf.py +0 -0
  31. {gsmap-1.70 → gsmap-1.71}/docs/source/data.rst +0 -0
  32. {gsmap-1.70 → gsmap-1.71}/docs/source/data_format.md +0 -0
  33. {gsmap-1.70 → gsmap-1.71}/docs/source/index.rst +0 -0
  34. {gsmap-1.70 → gsmap-1.71}/docs/source/install.rst +0 -0
  35. {gsmap-1.70 → gsmap-1.71}/docs/source/mouse.rst +0 -0
  36. {gsmap-1.70 → gsmap-1.71}/docs/source/mouse_example.md +0 -0
  37. {gsmap-1.70 → gsmap-1.71}/docs/source/quick_mode.md +0 -0
  38. {gsmap-1.70 → gsmap-1.71}/docs/source/release.rst +0 -0
  39. {gsmap-1.70 → gsmap-1.71}/docs/source/tutorials.rst +0 -0
  40. {gsmap-1.70 → gsmap-1.71}/pyproject.toml +0 -0
  41. {gsmap-1.70 → gsmap-1.71}/schematic.png +0 -0
  42. {gsmap-1.70 → gsmap-1.71}/src/gsMap/GNN/__init__.py +0 -0
  43. {gsmap-1.70 → gsmap-1.71}/src/gsMap/GNN/adjacency_matrix.py +0 -0
  44. {gsmap-1.70 → gsmap-1.71}/src/gsMap/GNN/model.py +0 -0
  45. {gsmap-1.70 → gsmap-1.71}/src/gsMap/GNN/train.py +0 -0
  46. {gsmap-1.70 → gsmap-1.71}/src/gsMap/__main__.py +0 -0
  47. {gsmap-1.70 → gsmap-1.71}/src/gsMap/cauchy_combination_test.py +0 -0
  48. {gsmap-1.70 → gsmap-1.71}/src/gsMap/config.py +0 -0
  49. {gsmap-1.70 → gsmap-1.71}/src/gsMap/diagnosis.py +0 -0
  50. {gsmap-1.70 → gsmap-1.71}/src/gsMap/format_sumstats.py +0 -0
  51. {gsmap-1.70 → gsmap-1.71}/src/gsMap/generate_ldscore.py +0 -0
  52. {gsmap-1.70 → gsmap-1.71}/src/gsMap/latent_to_gene.py +0 -0
  53. {gsmap-1.70 → gsmap-1.71}/src/gsMap/main.py +0 -0
  54. {gsmap-1.70 → gsmap-1.71}/src/gsMap/report.py +0 -0
  55. {gsmap-1.70 → gsmap-1.71}/src/gsMap/run_all_mode.py +0 -0
  56. {gsmap-1.70 → gsmap-1.71}/src/gsMap/setup.py +0 -0
  57. {gsmap-1.70 → gsmap-1.71}/src/gsMap/spatial_ldsc_multiple_sumstats.py +0 -0
  58. {gsmap-1.70 → gsmap-1.71}/src/gsMap/templates/report_template.html +0 -0
  59. {gsmap-1.70 → gsmap-1.71}/src/gsMap/utils/__init__.py +0 -0
  60. {gsmap-1.70 → gsmap-1.71}/src/gsMap/utils/generate_r2_matrix.py +0 -0
  61. {gsmap-1.70 → gsmap-1.71}/src/gsMap/utils/jackknife.py +0 -0
  62. {gsmap-1.70 → gsmap-1.71}/src/gsMap/utils/make_annotations.py +0 -0
  63. {gsmap-1.70 → gsmap-1.71}/src/gsMap/utils/manhattan_plot.py +0 -0
  64. {gsmap-1.70 → gsmap-1.71}/src/gsMap/utils/regression_read.py +0 -0
  65. {gsmap-1.70 → gsmap-1.71}/src/gsMap/visualize.py +0 -0
  66. {gsmap-1.70 → gsmap-1.71}/visualization_web_docs/Makefile +0 -0
  67. {gsmap-1.70 → gsmap-1.71}/visualization_web_docs/make.bat +0 -0
  68. {gsmap-1.70 → gsmap-1.71}/visualization_web_docs/requirements.txt +0 -0
  69. {gsmap-1.70 → gsmap-1.71}/visualization_web_docs/source/_static/raw1_add_txt.svg +0 -0
  70. {gsmap-1.70 → gsmap-1.71}/visualization_web_docs/source/_static/raw2_add_txt.svg +0 -0
  71. {gsmap-1.70 → gsmap-1.71}/visualization_web_docs/source/_static/raw3_add_txt.svg +0 -0
  72. {gsmap-1.70 → gsmap-1.71}/visualization_web_docs/source/_static/raw4_add_txt.svg +0 -0
  73. {gsmap-1.70 → gsmap-1.71}/visualization_web_docs/source/_static/raw5_add_txt.svg +0 -0
  74. {gsmap-1.70 → gsmap-1.71}/visualization_web_docs/source/_static/schematic.svg +0 -0
  75. {gsmap-1.70 → gsmap-1.71}/visualization_web_docs/source/conf.py +0 -0
  76. {gsmap-1.70 → gsmap-1.71}/visualization_web_docs/source/index.rst +0 -0
{gsmap-1.70 → gsmap-1.71}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: gsMap
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- Version: 1.70
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+ Version: 1.71
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  Summary: Genetics-informed pathogenic spatial mapping
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  Author-email: liyang <songliyang@westlake.edu.cn>, wenhao <chenwenhao@westlake.edu.cn>
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  Requires-Python: >=3.8
{gsmap-1.70 → gsmap-1.71}/src/gsMap/__init__.py RENAMED
@@ -2,4 +2,4 @@
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  Genetics-informed pathogenic spatial mapping
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  '''
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- __version__ = '1.70'
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+ __version__ = '1.71'
{gsmap-1.70 → gsmap-1.71}/src/gsMap/find_latent_representation.py RENAMED
@@ -64,7 +64,7 @@ class LatentRepresentationFinder:
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  self.graph_dict = construct_adjacency_matrix(adata, self.params)
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  def compute_pca(self):
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- self.latent_pca = PCA(n_components=self.params.feat_cell).fit_transform(self.expression_array)
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+ self.latent_pca = PCA(n_components=self.params.n_comps).fit_transform(self.expression_array)
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  return self.latent_pca
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  def run_gnn_vae(self, label, verbose='whole ST data'):
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