grz-cli 1.0.2__tar.gz → 1.0.3__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (22) hide show
  1. {grz_cli-1.0.2 → grz_cli-1.0.3}/CHANGELOG.md +12 -0
  2. {grz_cli-1.0.2 → grz_cli-1.0.3}/PKG-INFO +8 -5
  3. {grz_cli-1.0.2 → grz_cli-1.0.3}/README.md +5 -2
  4. {grz_cli-1.0.2 → grz_cli-1.0.3}/pyproject.toml +2 -2
  5. grz_cli-1.0.3/src/grz_cli/__init__.py +1 -0
  6. grz_cli-1.0.2/src/grz_cli/__init__.py +0 -1
  7. {grz_cli-1.0.2 → grz_cli-1.0.3}/.gitignore +0 -0
  8. {grz_cli-1.0.2 → grz_cli-1.0.3}/LICENSE +0 -0
  9. {grz_cli-1.0.2 → grz_cli-1.0.3}/MANIFEST.in +0 -0
  10. {grz_cli-1.0.2 → grz_cli-1.0.3}/src/__init__.py +0 -0
  11. {grz_cli-1.0.2 → grz_cli-1.0.3}/src/grz_cli/cli.py +0 -0
  12. {grz_cli-1.0.2 → grz_cli-1.0.3}/src/grz_cli/commands/__init__.py +0 -0
  13. {grz_cli-1.0.2 → grz_cli-1.0.3}/src/grz_cli/commands/encrypt.py +0 -0
  14. {grz_cli-1.0.2 → grz_cli-1.0.3}/src/grz_cli/commands/submit.py +0 -0
  15. {grz_cli-1.0.2 → grz_cli-1.0.3}/src/grz_cli/commands/upload.py +0 -0
  16. {grz_cli-1.0.2 → grz_cli-1.0.3}/src/grz_cli/commands/validate.py +0 -0
  17. {grz_cli-1.0.2 → grz_cli-1.0.3}/src/grz_cli/constants.py +0 -0
  18. {grz_cli-1.0.2 → grz_cli-1.0.3}/src/grz_cli/logging_setup.py +0 -0
  19. {grz_cli-1.0.2 → grz_cli-1.0.3}/src/grz_cli/models/__init__.py +0 -0
  20. {grz_cli-1.0.2 → grz_cli-1.0.3}/src/grz_cli/models/config.py +0 -0
  21. {grz_cli-1.0.2 → grz_cli-1.0.3}/src/grz_cli/py.typed +0 -0
  22. {grz_cli-1.0.2 → grz_cli-1.0.3}/uv.lock +0 -0
{grz_cli-1.0.2 → grz_cli-1.0.3}/CHANGELOG.md RENAMED
@@ -1,5 +1,17 @@
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  # Changelog
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+ ## [1.0.3](https://github.com/BfArM-MVH/grz-tools/compare/grz-cli-v1.0.2...grz-cli-v1.0.3) (2025-07-14)
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+
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+
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+ ### Bug Fixes
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+
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+ * **grzctl,grz-cli:** bump grz-pydantic-models for end-to-end tests ([#274](https://github.com/BfArM-MVH/grz-tools/issues/274)) ([a1ed791](https://github.com/BfArM-MVH/grz-tools/commit/a1ed791f1f9fce52d08f8e70fba12a674336d250))
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+ ### Documentation
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+
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+ * **grz-cli:** fix Conda update instructions ([#277](https://github.com/BfArM-MVH/grz-tools/issues/277)) ([fd6e054](https://github.com/BfArM-MVH/grz-tools/commit/fd6e054a8f8e80e1d3ab659ca1b9906199030c18))
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  ## [1.0.2](https://github.com/BfArM-MVH/grz-tools/compare/grz-cli-v1.0.1...grz-cli-v1.0.2) (2025-07-04)
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{grz_cli-1.0.2 → grz_cli-1.0.3}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: grz-cli
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- Version: 1.0.2
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+ Version: 1.0.3
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  Summary: Tool for validation, encryption and upload of MV submissions to GDCs.
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  Project-URL: Homepage, https://github.com/BfArM-MVH/grz-tools
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  Project-URL: Repository, https://github.com/BfArM-MVH/grz-tools
@@ -16,8 +16,8 @@ Requires-Python: >=3.12
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  Requires-Dist: boto3<2,>=1.36
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  Requires-Dist: click<9,>=8.2
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  Requires-Dist: crypt4gh<2,>=1.7
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- Requires-Dist: grz-common<2,>=1.0.2
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- Requires-Dist: grz-pydantic-models<3,>=2.0.2
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+ Requires-Dist: grz-common<2,>=1.0.3
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+ Requires-Dist: grz-pydantic-models<3,>=2.1.0
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  Requires-Dist: jsonschema<5,>=4.23.0
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  Requires-Dist: platformdirs<5,>=4.3.6
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  Requires-Dist: pydantic-settings<2.10,>=2.9.0
@@ -115,10 +115,12 @@ conda create -n grz-tools -c conda-forge -c bioconda "grz-cli"
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  conda activate grz-tools
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  ```
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- ##### Update instructions:
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+ ##### Update instructions
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+
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  Use the following command to update the tool:
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+
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  ```bash
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- conda update -n grz-tools "grz-cli"
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+ conda update -n grz-tools -c conda-forge -c bioconda grz-cli
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  ```
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@@ -139,6 +141,7 @@ pip upgrade grz-cli
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  #### Docker
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  Docker images are available via biocontainers at [https://biocontainers.pro/tools/grz-cli](https://biocontainers.pro/tools/grz-cli).
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+ The build process can take at least a few days after the Bioconda release, so double-check that the latest version in Bioconda is also the latest Docker image version.
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  ## Usage
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{grz_cli-1.0.2 → grz_cli-1.0.3}/README.md RENAMED
@@ -84,10 +84,12 @@ conda create -n grz-tools -c conda-forge -c bioconda "grz-cli"
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  conda activate grz-tools
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  ```
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- ##### Update instructions:
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+ ##### Update instructions
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  Use the following command to update the tool:
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  ```bash
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- conda update -n grz-tools "grz-cli"
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+ conda update -n grz-tools -c conda-forge -c bioconda grz-cli
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  ```
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@@ -108,6 +110,7 @@ pip upgrade grz-cli
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  #### Docker
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  Docker images are available via biocontainers at [https://biocontainers.pro/tools/grz-cli](https://biocontainers.pro/tools/grz-cli).
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+ The build process can take at least a few days after the Bioconda release, so double-check that the latest version in Bioconda is also the latest Docker image version.
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  ## Usage
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{grz_cli-1.0.2 → grz_cli-1.0.3}/pyproject.toml RENAMED
@@ -22,11 +22,11 @@ dependencies = [
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  "pydantic >=2.9.2,<2.10",
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  "pydantic-settings >=2.9.0,<2.10",
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  "platformdirs >=4.3.6,<5",
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- "grz-pydantic-models >=2.0.2,<3",
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+ "grz-pydantic-models >=2.1.0,<3",
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  "pysam ==0.23.*",
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  "rich ==13.*",
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  "requests >=2.32.3,<3",
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- "grz-common >=1.0.2,<2",
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+ "grz-common >=1.0.3,<2",
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  ]
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  classifiers = [
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  "Programming Language :: Python :: 3",
grz_cli-1.0.3/src/grz_cli/__init__.py ADDED
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+ __version__ = "1.0.3"
grz_cli-1.0.2/src/grz_cli/__init__.py DELETED
@@ -1 +0,0 @@
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- __version__ = "1.0.2"
{grz_cli-1.0.2 → grz_cli-1.0.3}/.gitignore RENAMED
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{grz_cli-1.0.2 → grz_cli-1.0.3}/LICENSE RENAMED
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{grz_cli-1.0.2 → grz_cli-1.0.3}/MANIFEST.in RENAMED
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{grz_cli-1.0.2 → grz_cli-1.0.3}/src/__init__.py RENAMED
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{grz_cli-1.0.2 → grz_cli-1.0.3}/src/grz_cli/cli.py RENAMED
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{grz_cli-1.0.2 → grz_cli-1.0.3}/src/grz_cli/py.typed RENAMED
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{grz_cli-1.0.2 → grz_cli-1.0.3}/uv.lock RENAMED
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