grz-cli 1.0.1__tar.gz → 1.0.3__tar.gz

{grz_cli-1.0.1 → grz_cli-1.0.3}/CHANGELOG.md

@@ -1,5 +1,27 @@
 # Changelog
 
+## [1.0.3](https://github.com/BfArM-MVH/grz-tools/compare/grz-cli-v1.0.2...grz-cli-v1.0.3) (2025-07-14)
+
+
+### Bug Fixes
+
+* **grzctl,grz-cli:** bump grz-pydantic-models for end-to-end tests ([#274](https://github.com/BfArM-MVH/grz-tools/issues/274)) ([a1ed791](https://github.com/BfArM-MVH/grz-tools/commit/a1ed791f1f9fce52d08f8e70fba12a674336d250))
+
+
+### Documentation
+
+* **grz-cli:** fix Conda update instructions ([#277](https://github.com/BfArM-MVH/grz-tools/issues/277)) ([fd6e054](https://github.com/BfArM-MVH/grz-tools/commit/fd6e054a8f8e80e1d3ab659ca1b9906199030c18))
+
+## [1.0.2](https://github.com/BfArM-MVH/grz-tools/compare/grz-cli-v1.0.1...grz-cli-v1.0.2) (2025-07-04)
+
+
+### Bug Fixes
+
+* **grz-common,grzctl,grz-cli:** remove runtime dependency on type stubs ([#258](https://github.com/BfArM-MVH/grz-tools/issues/258)) ([a116499](https://github.com/BfArM-MVH/grz-tools/commit/a116499de19655ec9c4a43093c2c077dd10efbbc))
+* **grz-db,grzctl:** address previously unchecked mypy type checks ([#247](https://github.com/BfArM-MVH/grz-tools/issues/247)) ([e51a65b](https://github.com/BfArM-MVH/grz-tools/commit/e51a65b090c891f44c6c4cc7199138d4cb15c07a))
+* **grzctl,grz-cli:** bump deps to enforce 1.1.9 metadata submission ([#264](https://github.com/BfArM-MVH/grz-tools/issues/264)) ([1255260](https://github.com/BfArM-MVH/grz-tools/commit/1255260e4af25d342e1c17e803aa6f6152de69c7))
+* **grzctl,grz-cli:** fix type check dependency by bumping grz-common ([#260](https://github.com/BfArM-MVH/grz-tools/issues/260)) ([92dce72](https://github.com/BfArM-MVH/grz-tools/commit/92dce723d8d2fbc7c11d03e2ebea98f7a0f4da19))
+
 ## [1.0.1](https://github.com/BfArM-MVH/grz-tools/compare/grz-cli-v1.0.0...grz-cli-v1.0.1) (2025-06-30)
 
 

{grz_cli-1.0.1 → grz_cli-1.0.3}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: grz-cli
-Version: 1.0.1
+Version: 1.0.3
 Summary: Tool for validation, encryption and upload of MV submissions to GDCs.
 Project-URL: Homepage, https://github.com/BfArM-MVH/grz-tools
 Project-URL: Repository, https://github.com/BfArM-MVH/grz-tools
@@ -16,8 +16,8 @@ Requires-Python: >=3.12
 Requires-Dist: boto3<2,>=1.36
 Requires-Dist: click<9,>=8.2
 Requires-Dist: crypt4gh<2,>=1.7
-Requires-Dist: grz-common>=1.0.0
-Requires-Dist: grz-pydantic-models<3,>=2.0.1
+Requires-Dist: grz-common<2,>=1.0.3
+Requires-Dist: grz-pydantic-models<3,>=2.1.0
 Requires-Dist: jsonschema<5,>=4.23.0
 Requires-Dist: platformdirs<5,>=4.3.6
 Requires-Dist: pydantic-settings<2.10,>=2.9.0
@@ -115,10 +115,12 @@ conda create -n grz-tools -c conda-forge -c bioconda "grz-cli"
 conda activate grz-tools
 ```
 
-##### Update instructions:
+##### Update instructions
+
 Use the following command to update the tool:
+
 ```bash
-conda update -n grz-tools "grz-cli"
+conda update -n grz-tools -c conda-forge -c bioconda grz-cli
 ```
 
 
@@ -139,6 +141,7 @@ pip upgrade grz-cli
 #### Docker
 Docker images are available via biocontainers at [https://biocontainers.pro/tools/grz-cli](https://biocontainers.pro/tools/grz-cli).
 
+The build process can take at least a few days after the Bioconda release, so double-check that the latest version in Bioconda is also the latest Docker image version.
 
 ## Usage
 

{grz_cli-1.0.1 → grz_cli-1.0.3}/README.md

@@ -84,10 +84,12 @@ conda create -n grz-tools -c conda-forge -c bioconda "grz-cli"
 conda activate grz-tools
 ```
 
-##### Update instructions:
+##### Update instructions
+
 Use the following command to update the tool:
+
 ```bash
-conda update -n grz-tools "grz-cli"
+conda update -n grz-tools -c conda-forge -c bioconda grz-cli
 ```
 
 
@@ -108,6 +110,7 @@ pip upgrade grz-cli
 #### Docker
 Docker images are available via biocontainers at [https://biocontainers.pro/tools/grz-cli](https://biocontainers.pro/tools/grz-cli).
 
+The build process can take at least a few days after the Bioconda release, so double-check that the latest version in Bioconda is also the latest Docker image version.
 
 ## Usage
 

{grz_cli-1.0.1 → grz_cli-1.0.3}/pyproject.toml

@@ -22,11 +22,11 @@ dependencies = [
     "pydantic >=2.9.2,<2.10",
     "pydantic-settings >=2.9.0,<2.10",
     "platformdirs >=4.3.6,<5",
-    "grz-pydantic-models >=2.0.1,<3",
+    "grz-pydantic-models >=2.1.0,<3",
     "pysam ==0.23.*",
     "rich ==13.*",
     "requests >=2.32.3,<3",
-    "grz-common >=1.0.0",
+    "grz-common >=1.0.3,<2",
 ]
 classifiers = [
     "Programming Language :: Python :: 3",

grz_cli-1.0.3/src/grz_cli/__init__.py

@@ -0,0 +1 @@
+__version__ = "1.0.3"

{grz_cli-1.0.1 → grz_cli-1.0.3}/uv.lock

@@ -322,7 +322,7 @@ dev = [
 [package.metadata]
 requires-dist = [
     { name = "boto3", specifier = ">=1.36,<2" },
-    { name = "click", specifier = ">=8.1.7,<9" },
+    { name = "click", specifier = ">=8.2,<9" },
     { name = "crypt4gh", specifier = ">=1.7,<2" },
     { name = "grz-common", editable = "../grz-common" },
     { name = "grz-pydantic-models", editable = "../grz-pydantic-models" },
@@ -365,7 +365,7 @@ dependencies = [
 [package.metadata]
 requires-dist = [
     { name = "boto3", specifier = ">=1.36,<2" },
-    { name = "click", specifier = ">=8.1.7,<9" },
+    { name = "click", specifier = ">=8.2,<9" },
     { name = "crypt4gh", specifier = ">=1.7,<2" },
     { name = "grz-pydantic-models", editable = "../grz-pydantic-models" },
     { name = "jsonschema", specifier = ">=4.23.0,<5" },

grz_cli-1.0.1/src/grz_cli/__init__.py

@@ -1 +0,0 @@
-__version__ = "1.0.1"