grz-cli 0.1.1__tar.gz → 0.1.2__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {grz_cli-0.1.1/src/grz_cli.egg-info → grz_cli-0.1.2}/PKG-INFO +16 -16
- {grz_cli-0.1.1 → grz_cli-0.1.2}/pyproject.toml +17 -16
- {grz_cli-0.1.1 → grz_cli-0.1.2/src/grz_cli.egg-info}/PKG-INFO +16 -16
- grz_cli-0.1.2/src/grz_cli.egg-info/requires.txt +17 -0
- grz_cli-0.1.1/src/grz_cli.egg-info/requires.txt +0 -17
- {grz_cli-0.1.1 → grz_cli-0.1.2}/LICENSE +0 -0
- {grz_cli-0.1.1 → grz_cli-0.1.2}/MANIFEST.in +0 -0
- {grz_cli-0.1.1 → grz_cli-0.1.2}/README.md +0 -0
- {grz_cli-0.1.1 → grz_cli-0.1.2}/setup.cfg +0 -0
- {grz_cli-0.1.1 → grz_cli-0.1.2}/src/__init__.py +0 -0
- {grz_cli-0.1.1 → grz_cli-0.1.2}/src/grz_cli/__init__.py +0 -0
- {grz_cli-0.1.1 → grz_cli-0.1.2}/src/grz_cli/cli.py +0 -0
- {grz_cli-0.1.1 → grz_cli-0.1.2}/src/grz_cli/constants.py +0 -0
- {grz_cli-0.1.1 → grz_cli-0.1.2}/src/grz_cli/download.py +0 -0
- {grz_cli-0.1.1 → grz_cli-0.1.2}/src/grz_cli/fastq_validation.py +0 -0
- {grz_cli-0.1.1 → grz_cli-0.1.2}/src/grz_cli/file_operations.py +0 -0
- {grz_cli-0.1.1 → grz_cli-0.1.2}/src/grz_cli/logging_setup.py +0 -0
- {grz_cli-0.1.1 → grz_cli-0.1.2}/src/grz_cli/models/__init__.py +0 -0
- {grz_cli-0.1.1 → grz_cli-0.1.2}/src/grz_cli/models/config.py +0 -0
- {grz_cli-0.1.1 → grz_cli-0.1.2}/src/grz_cli/models/v1_0_0/__init__.py +0 -0
- {grz_cli-0.1.1 → grz_cli-0.1.2}/src/grz_cli/models/v1_0_0/metadata.py +0 -0
- {grz_cli-0.1.1 → grz_cli-0.1.2}/src/grz_cli/parser.py +0 -0
- {grz_cli-0.1.1 → grz_cli-0.1.2}/src/grz_cli/progress_logging.py +0 -0
- {grz_cli-0.1.1 → grz_cli-0.1.2}/src/grz_cli/resources/grz-schema.json +0 -0
- {grz_cli-0.1.1 → grz_cli-0.1.2}/src/grz_cli/states.py +0 -0
- {grz_cli-0.1.1 → grz_cli-0.1.2}/src/grz_cli/upload.py +0 -0
- {grz_cli-0.1.1 → grz_cli-0.1.2}/src/grz_cli.egg-info/SOURCES.txt +0 -0
- {grz_cli-0.1.1 → grz_cli-0.1.2}/src/grz_cli.egg-info/dependency_links.txt +0 -0
- {grz_cli-0.1.1 → grz_cli-0.1.2}/src/grz_cli.egg-info/entry_points.txt +0 -0
- {grz_cli-0.1.1 → grz_cli-0.1.2}/src/grz_cli.egg-info/top_level.txt +0 -0
- {grz_cli-0.1.1 → grz_cli-0.1.2}/tests/test_cli.py +0 -0
- {grz_cli-0.1.1 → grz_cli-0.1.2}/tests/test_download.py +0 -0
- {grz_cli-0.1.1 → grz_cli-0.1.2}/tests/test_fastq_validation.py +0 -0
- {grz_cli-0.1.1 → grz_cli-0.1.2}/tests/test_file_operations.py +0 -0
- {grz_cli-0.1.1 → grz_cli-0.1.2}/tests/test_file_progress_logging.py +0 -0
- {grz_cli-0.1.1 → grz_cli-0.1.2}/tests/test_parser.py +0 -0
- {grz_cli-0.1.1 → grz_cli-0.1.2}/tests/test_read_multiple_json.py +0 -0
- {grz_cli-0.1.1 → grz_cli-0.1.2}/tests/test_upload.py +0 -0
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
Metadata-Version: 2.1
|
|
2
2
|
Name: grz-cli
|
|
3
|
-
Version: 0.1.
|
|
3
|
+
Version: 0.1.2
|
|
4
4
|
Summary: Tool for validation, encryption and upload of MV submissions to GDCs.
|
|
5
5
|
Author-email: Koray Kirli <koraykirli@gmail.com>, Mathias Lesche <mathias.lesche@tu-dresden.de>, "Florian R. Hölzlwimmer" <git.ich@frhoelzlwimmer.de>, Till Hartmann <till.hartmann@bih-charite.de>, Thomas Sell <thomas.sell@bih-charite.de>
|
|
6
6
|
License: MIT
|
|
@@ -12,22 +12,22 @@ Classifier: Operating System :: OS Independent
|
|
|
12
12
|
Requires-Python: >=3.12
|
|
13
13
|
Description-Content-Type: text/markdown
|
|
14
14
|
License-File: LICENSE
|
|
15
|
-
Requires-Dist: boto3
|
|
16
|
-
Requires-Dist: click
|
|
17
|
-
Requires-Dist: crypt4gh
|
|
18
|
-
Requires-Dist: jsonschema
|
|
19
|
-
Requires-Dist: pyyaml
|
|
20
|
-
Requires-Dist: tqdm
|
|
21
|
-
Requires-Dist: pydantic
|
|
22
|
-
Requires-Dist: platformdirs
|
|
15
|
+
Requires-Dist: boto3<2,>=1.35.39
|
|
16
|
+
Requires-Dist: click<9,>=8.1.7
|
|
17
|
+
Requires-Dist: crypt4gh<2,>=1.7
|
|
18
|
+
Requires-Dist: jsonschema<5,>=4.23.0
|
|
19
|
+
Requires-Dist: pyyaml<7,>=6.0.2
|
|
20
|
+
Requires-Dist: tqdm<5,>=4.66.5
|
|
21
|
+
Requires-Dist: pydantic<2.10,>=2.9.2
|
|
22
|
+
Requires-Dist: platformdirs<5,>=4.3.6
|
|
23
23
|
Provides-Extra: test
|
|
24
|
-
Requires-Dist: pytest
|
|
25
|
-
Requires-Dist: pytest-cov
|
|
26
|
-
Requires-Dist: pytest-mock
|
|
27
|
-
Requires-Dist: moto[s3]
|
|
28
|
-
Requires-Dist: pytest-sugar
|
|
29
|
-
Requires-Dist: ruff
|
|
30
|
-
Requires-Dist: numpy
|
|
24
|
+
Requires-Dist: pytest<9,>=8.3.3; extra == "test"
|
|
25
|
+
Requires-Dist: pytest-cov<6,>=5.0.0; extra == "test"
|
|
26
|
+
Requires-Dist: pytest-mock<4,>=3.14.0; extra == "test"
|
|
27
|
+
Requires-Dist: moto[s3]<6,>=5.0.16; extra == "test"
|
|
28
|
+
Requires-Dist: pytest-sugar<2,>=1.0.0; extra == "test"
|
|
29
|
+
Requires-Dist: ruff<1,>=0.8.1; extra == "test"
|
|
30
|
+
Requires-Dist: numpy<3,>=2.1.2; extra == "test"
|
|
31
31
|
|
|
32
32
|
# GRZ CLI
|
|
33
33
|
|
|
@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
|
|
|
4
4
|
|
|
5
5
|
[project]
|
|
6
6
|
name = "grz-cli"
|
|
7
|
-
version = "0.1.
|
|
7
|
+
version = "0.1.2"
|
|
8
8
|
description = "Tool for validation, encryption and upload of MV submissions to GDCs."
|
|
9
9
|
readme = "README.md"
|
|
10
10
|
license = { text = "MIT" }
|
|
@@ -16,14 +16,14 @@ authors = [
|
|
|
16
16
|
{ name = "Thomas Sell", email = "thomas.sell@bih-charite.de" },
|
|
17
17
|
]
|
|
18
18
|
dependencies = [
|
|
19
|
-
"boto3
|
|
20
|
-
"click
|
|
21
|
-
"crypt4gh
|
|
22
|
-
"jsonschema
|
|
23
|
-
"pyyaml
|
|
24
|
-
"tqdm
|
|
25
|
-
"pydantic
|
|
26
|
-
"platformdirs
|
|
19
|
+
"boto3 >=1.35.39,<2",
|
|
20
|
+
"click >=8.1.7,<9",
|
|
21
|
+
"crypt4gh >=1.7,<2",
|
|
22
|
+
"jsonschema >=4.23.0,<5",
|
|
23
|
+
"pyyaml >=6.0.2,<7",
|
|
24
|
+
"tqdm >=4.66.5,<5",
|
|
25
|
+
"pydantic >=2.9.2,<2.10",
|
|
26
|
+
"platformdirs >=4.3.6,<5",
|
|
27
27
|
]
|
|
28
28
|
classifiers = [
|
|
29
29
|
"Programming Language :: Python :: 3",
|
|
@@ -41,13 +41,13 @@ grz-cli = "grz_cli.cli:cli"
|
|
|
41
41
|
|
|
42
42
|
[project.optional-dependencies]
|
|
43
43
|
test = [
|
|
44
|
-
"pytest
|
|
45
|
-
"pytest-cov
|
|
46
|
-
"pytest-mock
|
|
47
|
-
"moto[s3]
|
|
48
|
-
"pytest-sugar
|
|
49
|
-
"ruff
|
|
50
|
-
"numpy
|
|
44
|
+
"pytest >=8.3.3,<9",
|
|
45
|
+
"pytest-cov >=5.0.0,<6",
|
|
46
|
+
"pytest-mock >=3.14.0,<4",
|
|
47
|
+
"moto[s3] >=5.0.16,<6",
|
|
48
|
+
"pytest-sugar >=1.0.0,<2",
|
|
49
|
+
"ruff >=0.8.1,<1",
|
|
50
|
+
"numpy >=2.1.2,<3"
|
|
51
51
|
]
|
|
52
52
|
|
|
53
53
|
[dependency-groups]
|
|
@@ -177,6 +177,7 @@ commands = [["mypy"]]
|
|
|
177
177
|
dev-dependencies = [
|
|
178
178
|
"datamodel-code-generator>=0.26.2",
|
|
179
179
|
"mypy>=1.13.0",
|
|
180
|
+
"ruff>=0.8.1",
|
|
180
181
|
"tox>=4.23.2",
|
|
181
182
|
"types-pyyaml>=6.0.12.20240917",
|
|
182
183
|
"types-tqdm>=4.66.0.20240417",
|
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
Metadata-Version: 2.1
|
|
2
2
|
Name: grz-cli
|
|
3
|
-
Version: 0.1.
|
|
3
|
+
Version: 0.1.2
|
|
4
4
|
Summary: Tool for validation, encryption and upload of MV submissions to GDCs.
|
|
5
5
|
Author-email: Koray Kirli <koraykirli@gmail.com>, Mathias Lesche <mathias.lesche@tu-dresden.de>, "Florian R. Hölzlwimmer" <git.ich@frhoelzlwimmer.de>, Till Hartmann <till.hartmann@bih-charite.de>, Thomas Sell <thomas.sell@bih-charite.de>
|
|
6
6
|
License: MIT
|
|
@@ -12,22 +12,22 @@ Classifier: Operating System :: OS Independent
|
|
|
12
12
|
Requires-Python: >=3.12
|
|
13
13
|
Description-Content-Type: text/markdown
|
|
14
14
|
License-File: LICENSE
|
|
15
|
-
Requires-Dist: boto3
|
|
16
|
-
Requires-Dist: click
|
|
17
|
-
Requires-Dist: crypt4gh
|
|
18
|
-
Requires-Dist: jsonschema
|
|
19
|
-
Requires-Dist: pyyaml
|
|
20
|
-
Requires-Dist: tqdm
|
|
21
|
-
Requires-Dist: pydantic
|
|
22
|
-
Requires-Dist: platformdirs
|
|
15
|
+
Requires-Dist: boto3<2,>=1.35.39
|
|
16
|
+
Requires-Dist: click<9,>=8.1.7
|
|
17
|
+
Requires-Dist: crypt4gh<2,>=1.7
|
|
18
|
+
Requires-Dist: jsonschema<5,>=4.23.0
|
|
19
|
+
Requires-Dist: pyyaml<7,>=6.0.2
|
|
20
|
+
Requires-Dist: tqdm<5,>=4.66.5
|
|
21
|
+
Requires-Dist: pydantic<2.10,>=2.9.2
|
|
22
|
+
Requires-Dist: platformdirs<5,>=4.3.6
|
|
23
23
|
Provides-Extra: test
|
|
24
|
-
Requires-Dist: pytest
|
|
25
|
-
Requires-Dist: pytest-cov
|
|
26
|
-
Requires-Dist: pytest-mock
|
|
27
|
-
Requires-Dist: moto[s3]
|
|
28
|
-
Requires-Dist: pytest-sugar
|
|
29
|
-
Requires-Dist: ruff
|
|
30
|
-
Requires-Dist: numpy
|
|
24
|
+
Requires-Dist: pytest<9,>=8.3.3; extra == "test"
|
|
25
|
+
Requires-Dist: pytest-cov<6,>=5.0.0; extra == "test"
|
|
26
|
+
Requires-Dist: pytest-mock<4,>=3.14.0; extra == "test"
|
|
27
|
+
Requires-Dist: moto[s3]<6,>=5.0.16; extra == "test"
|
|
28
|
+
Requires-Dist: pytest-sugar<2,>=1.0.0; extra == "test"
|
|
29
|
+
Requires-Dist: ruff<1,>=0.8.1; extra == "test"
|
|
30
|
+
Requires-Dist: numpy<3,>=2.1.2; extra == "test"
|
|
31
31
|
|
|
32
32
|
# GRZ CLI
|
|
33
33
|
|
|
@@ -0,0 +1,17 @@
|
|
|
1
|
+
boto3<2,>=1.35.39
|
|
2
|
+
click<9,>=8.1.7
|
|
3
|
+
crypt4gh<2,>=1.7
|
|
4
|
+
jsonschema<5,>=4.23.0
|
|
5
|
+
pyyaml<7,>=6.0.2
|
|
6
|
+
tqdm<5,>=4.66.5
|
|
7
|
+
pydantic<2.10,>=2.9.2
|
|
8
|
+
platformdirs<5,>=4.3.6
|
|
9
|
+
|
|
10
|
+
[test]
|
|
11
|
+
pytest<9,>=8.3.3
|
|
12
|
+
pytest-cov<6,>=5.0.0
|
|
13
|
+
pytest-mock<4,>=3.14.0
|
|
14
|
+
moto[s3]<6,>=5.0.16
|
|
15
|
+
pytest-sugar<2,>=1.0.0
|
|
16
|
+
ruff<1,>=0.8.1
|
|
17
|
+
numpy<3,>=2.1.2
|
|
@@ -1,17 +0,0 @@
|
|
|
1
|
-
boto3~=1.35.39
|
|
2
|
-
click~=8.1.7
|
|
3
|
-
crypt4gh~=1.7
|
|
4
|
-
jsonschema~=4.23.0
|
|
5
|
-
pyyaml~=6.0.2
|
|
6
|
-
tqdm~=4.66.5
|
|
7
|
-
pydantic~=2.9.2
|
|
8
|
-
platformdirs~=4.3.6
|
|
9
|
-
|
|
10
|
-
[test]
|
|
11
|
-
pytest~=8.3.3
|
|
12
|
-
pytest-cov~=5.0.0
|
|
13
|
-
pytest-mock~=3.14.0
|
|
14
|
-
moto[s3]~=5.0.16
|
|
15
|
-
pytest-sugar~=1.0.0
|
|
16
|
-
ruff~=0.7.0
|
|
17
|
-
numpy~=2.1.2
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|