grz-cli 0.1.1__tar.gz → 0.1.2__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (38) hide show
  1. {grz_cli-0.1.1/src/grz_cli.egg-info → grz_cli-0.1.2}/PKG-INFO +16 -16
  2. {grz_cli-0.1.1 → grz_cli-0.1.2}/pyproject.toml +17 -16
  3. {grz_cli-0.1.1 → grz_cli-0.1.2/src/grz_cli.egg-info}/PKG-INFO +16 -16
  4. grz_cli-0.1.2/src/grz_cli.egg-info/requires.txt +17 -0
  5. grz_cli-0.1.1/src/grz_cli.egg-info/requires.txt +0 -17
  6. {grz_cli-0.1.1 → grz_cli-0.1.2}/LICENSE +0 -0
  7. {grz_cli-0.1.1 → grz_cli-0.1.2}/MANIFEST.in +0 -0
  8. {grz_cli-0.1.1 → grz_cli-0.1.2}/README.md +0 -0
  9. {grz_cli-0.1.1 → grz_cli-0.1.2}/setup.cfg +0 -0
  10. {grz_cli-0.1.1 → grz_cli-0.1.2}/src/__init__.py +0 -0
  11. {grz_cli-0.1.1 → grz_cli-0.1.2}/src/grz_cli/__init__.py +0 -0
  12. {grz_cli-0.1.1 → grz_cli-0.1.2}/src/grz_cli/cli.py +0 -0
  13. {grz_cli-0.1.1 → grz_cli-0.1.2}/src/grz_cli/constants.py +0 -0
  14. {grz_cli-0.1.1 → grz_cli-0.1.2}/src/grz_cli/download.py +0 -0
  15. {grz_cli-0.1.1 → grz_cli-0.1.2}/src/grz_cli/fastq_validation.py +0 -0
  16. {grz_cli-0.1.1 → grz_cli-0.1.2}/src/grz_cli/file_operations.py +0 -0
  17. {grz_cli-0.1.1 → grz_cli-0.1.2}/src/grz_cli/logging_setup.py +0 -0
  18. {grz_cli-0.1.1 → grz_cli-0.1.2}/src/grz_cli/models/__init__.py +0 -0
  19. {grz_cli-0.1.1 → grz_cli-0.1.2}/src/grz_cli/models/config.py +0 -0
  20. {grz_cli-0.1.1 → grz_cli-0.1.2}/src/grz_cli/models/v1_0_0/__init__.py +0 -0
  21. {grz_cli-0.1.1 → grz_cli-0.1.2}/src/grz_cli/models/v1_0_0/metadata.py +0 -0
  22. {grz_cli-0.1.1 → grz_cli-0.1.2}/src/grz_cli/parser.py +0 -0
  23. {grz_cli-0.1.1 → grz_cli-0.1.2}/src/grz_cli/progress_logging.py +0 -0
  24. {grz_cli-0.1.1 → grz_cli-0.1.2}/src/grz_cli/resources/grz-schema.json +0 -0
  25. {grz_cli-0.1.1 → grz_cli-0.1.2}/src/grz_cli/states.py +0 -0
  26. {grz_cli-0.1.1 → grz_cli-0.1.2}/src/grz_cli/upload.py +0 -0
  27. {grz_cli-0.1.1 → grz_cli-0.1.2}/src/grz_cli.egg-info/SOURCES.txt +0 -0
  28. {grz_cli-0.1.1 → grz_cli-0.1.2}/src/grz_cli.egg-info/dependency_links.txt +0 -0
  29. {grz_cli-0.1.1 → grz_cli-0.1.2}/src/grz_cli.egg-info/entry_points.txt +0 -0
  30. {grz_cli-0.1.1 → grz_cli-0.1.2}/src/grz_cli.egg-info/top_level.txt +0 -0
  31. {grz_cli-0.1.1 → grz_cli-0.1.2}/tests/test_cli.py +0 -0
  32. {grz_cli-0.1.1 → grz_cli-0.1.2}/tests/test_download.py +0 -0
  33. {grz_cli-0.1.1 → grz_cli-0.1.2}/tests/test_fastq_validation.py +0 -0
  34. {grz_cli-0.1.1 → grz_cli-0.1.2}/tests/test_file_operations.py +0 -0
  35. {grz_cli-0.1.1 → grz_cli-0.1.2}/tests/test_file_progress_logging.py +0 -0
  36. {grz_cli-0.1.1 → grz_cli-0.1.2}/tests/test_parser.py +0 -0
  37. {grz_cli-0.1.1 → grz_cli-0.1.2}/tests/test_read_multiple_json.py +0 -0
  38. {grz_cli-0.1.1 → grz_cli-0.1.2}/tests/test_upload.py +0 -0
@@ -1,6 +1,6 @@
1
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  Metadata-Version: 2.1
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  Name: grz-cli
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- Version: 0.1.1
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+ Version: 0.1.2
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  Summary: Tool for validation, encryption and upload of MV submissions to GDCs.
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  Author-email: Koray Kirli <koraykirli@gmail.com>, Mathias Lesche <mathias.lesche@tu-dresden.de>, "Florian R. Hölzlwimmer" <git.ich@frhoelzlwimmer.de>, Till Hartmann <till.hartmann@bih-charite.de>, Thomas Sell <thomas.sell@bih-charite.de>
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  License: MIT
@@ -12,22 +12,22 @@ Classifier: Operating System :: OS Independent
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  Requires-Python: >=3.12
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  Description-Content-Type: text/markdown
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  License-File: LICENSE
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- Requires-Dist: boto3~=1.35.39
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- Requires-Dist: click~=8.1.7
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- Requires-Dist: crypt4gh~=1.7
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- Requires-Dist: jsonschema~=4.23.0
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- Requires-Dist: pyyaml~=6.0.2
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- Requires-Dist: tqdm~=4.66.5
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- Requires-Dist: pydantic~=2.9.2
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- Requires-Dist: platformdirs~=4.3.6
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+ Requires-Dist: boto3<2,>=1.35.39
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+ Requires-Dist: click<9,>=8.1.7
17
+ Requires-Dist: crypt4gh<2,>=1.7
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+ Requires-Dist: jsonschema<5,>=4.23.0
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+ Requires-Dist: pyyaml<7,>=6.0.2
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+ Requires-Dist: tqdm<5,>=4.66.5
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+ Requires-Dist: pydantic<2.10,>=2.9.2
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+ Requires-Dist: platformdirs<5,>=4.3.6
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  Provides-Extra: test
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- Requires-Dist: pytest~=8.3.3; extra == "test"
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- Requires-Dist: pytest-cov~=5.0.0; extra == "test"
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- Requires-Dist: pytest-mock~=3.14.0; extra == "test"
27
- Requires-Dist: moto[s3]~=5.0.16; extra == "test"
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- Requires-Dist: pytest-sugar~=1.0.0; extra == "test"
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- Requires-Dist: ruff~=0.7.0; extra == "test"
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- Requires-Dist: numpy~=2.1.2; extra == "test"
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+ Requires-Dist: pytest<9,>=8.3.3; extra == "test"
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+ Requires-Dist: pytest-cov<6,>=5.0.0; extra == "test"
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+ Requires-Dist: pytest-mock<4,>=3.14.0; extra == "test"
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+ Requires-Dist: moto[s3]<6,>=5.0.16; extra == "test"
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+ Requires-Dist: pytest-sugar<2,>=1.0.0; extra == "test"
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+ Requires-Dist: ruff<1,>=0.8.1; extra == "test"
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+ Requires-Dist: numpy<3,>=2.1.2; extra == "test"
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  # GRZ CLI
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@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
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  [project]
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  name = "grz-cli"
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- version = "0.1.1"
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+ version = "0.1.2"
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  description = "Tool for validation, encryption and upload of MV submissions to GDCs."
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  readme = "README.md"
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  license = { text = "MIT" }
@@ -16,14 +16,14 @@ authors = [
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  { name = "Thomas Sell", email = "thomas.sell@bih-charite.de" },
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  ]
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  dependencies = [
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- "boto3 ~=1.35.39",
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- "click ~=8.1.7",
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- "crypt4gh ~=1.7",
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- "jsonschema ~=4.23.0",
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- "pyyaml ~=6.0.2",
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- "tqdm ~=4.66.5",
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- "pydantic ~=2.9.2",
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- "platformdirs ~=4.3.6",
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+ "boto3 >=1.35.39,<2",
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+ "click >=8.1.7,<9",
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+ "crypt4gh >=1.7,<2",
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+ "jsonschema >=4.23.0,<5",
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+ "pyyaml >=6.0.2,<7",
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+ "tqdm >=4.66.5,<5",
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+ "pydantic >=2.9.2,<2.10",
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+ "platformdirs >=4.3.6,<5",
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  ]
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  classifiers = [
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  "Programming Language :: Python :: 3",
@@ -41,13 +41,13 @@ grz-cli = "grz_cli.cli:cli"
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  [project.optional-dependencies]
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  test = [
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- "pytest ~=8.3.3",
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- "pytest-cov ~=5.0.0",
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- "pytest-mock ~=3.14.0",
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- "moto[s3] ~=5.0.16",
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- "pytest-sugar ~=1.0.0",
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- "ruff ~=0.7.0",
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- "numpy ~=2.1.2"
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+ "pytest >=8.3.3,<9",
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+ "pytest-cov >=5.0.0,<6",
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+ "pytest-mock >=3.14.0,<4",
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+ "moto[s3] >=5.0.16,<6",
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+ "pytest-sugar >=1.0.0,<2",
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+ "ruff >=0.8.1,<1",
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+ "numpy >=2.1.2,<3"
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  ]
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53
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  [dependency-groups]
@@ -177,6 +177,7 @@ commands = [["mypy"]]
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  dev-dependencies = [
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  "datamodel-code-generator>=0.26.2",
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  "mypy>=1.13.0",
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+ "ruff>=0.8.1",
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  "tox>=4.23.2",
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  "types-pyyaml>=6.0.12.20240917",
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  "types-tqdm>=4.66.0.20240417",
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: grz-cli
3
- Version: 0.1.1
3
+ Version: 0.1.2
4
4
  Summary: Tool for validation, encryption and upload of MV submissions to GDCs.
5
5
  Author-email: Koray Kirli <koraykirli@gmail.com>, Mathias Lesche <mathias.lesche@tu-dresden.de>, "Florian R. Hölzlwimmer" <git.ich@frhoelzlwimmer.de>, Till Hartmann <till.hartmann@bih-charite.de>, Thomas Sell <thomas.sell@bih-charite.de>
6
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  License: MIT
@@ -12,22 +12,22 @@ Classifier: Operating System :: OS Independent
12
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  Requires-Python: >=3.12
13
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  Description-Content-Type: text/markdown
14
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  License-File: LICENSE
15
- Requires-Dist: boto3~=1.35.39
16
- Requires-Dist: click~=8.1.7
17
- Requires-Dist: crypt4gh~=1.7
18
- Requires-Dist: jsonschema~=4.23.0
19
- Requires-Dist: pyyaml~=6.0.2
20
- Requires-Dist: tqdm~=4.66.5
21
- Requires-Dist: pydantic~=2.9.2
22
- Requires-Dist: platformdirs~=4.3.6
15
+ Requires-Dist: boto3<2,>=1.35.39
16
+ Requires-Dist: click<9,>=8.1.7
17
+ Requires-Dist: crypt4gh<2,>=1.7
18
+ Requires-Dist: jsonschema<5,>=4.23.0
19
+ Requires-Dist: pyyaml<7,>=6.0.2
20
+ Requires-Dist: tqdm<5,>=4.66.5
21
+ Requires-Dist: pydantic<2.10,>=2.9.2
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+ Requires-Dist: platformdirs<5,>=4.3.6
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  Provides-Extra: test
24
- Requires-Dist: pytest~=8.3.3; extra == "test"
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- Requires-Dist: pytest-cov~=5.0.0; extra == "test"
26
- Requires-Dist: pytest-mock~=3.14.0; extra == "test"
27
- Requires-Dist: moto[s3]~=5.0.16; extra == "test"
28
- Requires-Dist: pytest-sugar~=1.0.0; extra == "test"
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- Requires-Dist: ruff~=0.7.0; extra == "test"
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- Requires-Dist: numpy~=2.1.2; extra == "test"
24
+ Requires-Dist: pytest<9,>=8.3.3; extra == "test"
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+ Requires-Dist: pytest-cov<6,>=5.0.0; extra == "test"
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+ Requires-Dist: pytest-mock<4,>=3.14.0; extra == "test"
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+ Requires-Dist: moto[s3]<6,>=5.0.16; extra == "test"
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+ Requires-Dist: pytest-sugar<2,>=1.0.0; extra == "test"
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+ Requires-Dist: ruff<1,>=0.8.1; extra == "test"
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+ Requires-Dist: numpy<3,>=2.1.2; extra == "test"
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  # GRZ CLI
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@@ -0,0 +1,17 @@
1
+ boto3<2,>=1.35.39
2
+ click<9,>=8.1.7
3
+ crypt4gh<2,>=1.7
4
+ jsonschema<5,>=4.23.0
5
+ pyyaml<7,>=6.0.2
6
+ tqdm<5,>=4.66.5
7
+ pydantic<2.10,>=2.9.2
8
+ platformdirs<5,>=4.3.6
9
+
10
+ [test]
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+ pytest<9,>=8.3.3
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+ pytest-cov<6,>=5.0.0
13
+ pytest-mock<4,>=3.14.0
14
+ moto[s3]<6,>=5.0.16
15
+ pytest-sugar<2,>=1.0.0
16
+ ruff<1,>=0.8.1
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+ numpy<3,>=2.1.2
@@ -1,17 +0,0 @@
1
- boto3~=1.35.39
2
- click~=8.1.7
3
- crypt4gh~=1.7
4
- jsonschema~=4.23.0
5
- pyyaml~=6.0.2
6
- tqdm~=4.66.5
7
- pydantic~=2.9.2
8
- platformdirs~=4.3.6
9
-
10
- [test]
11
- pytest~=8.3.3
12
- pytest-cov~=5.0.0
13
- pytest-mock~=3.14.0
14
- moto[s3]~=5.0.16
15
- pytest-sugar~=1.0.0
16
- ruff~=0.7.0
17
- numpy~=2.1.2
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