graphmark 0.1.0__tar.gz → 0.1.1__tar.gz

{graphmark-0.1.0 → graphmark-0.1.1}/.gitignore

@@ -8,3 +8,7 @@ dist/
 .venv/
 venv/
 .DS_Store
+
+# afk build artifacts (keep config.toml, ignore the noise)
+.afk/transcripts/
+.afk/worktrees/

{graphmark-0.1.0 → graphmark-0.1.1}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: graphmark
-Version: 0.1.0
+Version: 0.1.1
 Summary: Deterministic knowledge-graph analysis for markdown / [[wikilink]] vaults.
 Project-URL: Homepage, https://github.com/cdcoonce/graphmark
 Project-URL: Repository, https://github.com/cdcoonce/graphmark

{graphmark-0.1.0 → graphmark-0.1.1}/pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "graphmark"
-version = "0.1.0"
+version = "0.1.1"
 description = "Deterministic knowledge-graph analysis for markdown / [[wikilink]] vaults."
 readme = "README.md"
 requires-python = ">=3.11"

{graphmark-0.1.0 → graphmark-0.1.1}/src/graphmark/metrics.py

@@ -154,7 +154,7 @@ def gaps(
     G = _undirected(graph)
 
     def _hub(r: str) -> bool:
-        return hub_degree is not None and G.degree(r) >= hub_degree
+        return hub_degree is not None and r in G and G.degree(r) >= hub_degree
 
     dedup_map: dict = {}
 

graphmark-0.1.1/tests/fixtures/gaps/expected_oog.json

@@ -0,0 +1,7 @@
+{
+  "_provenance": "FROZEN ORACLE — DO NOT EDIT. Computed via brain_map.py's gaps() on the gaps/ graph with the out-of-graph similar_fn (similar_oog.json). brain_map treats a note outside the graph as degree 0 (non-hub) rather than crashing; graphmark must match. afk-agent-system#654.",
+  "params": { "threshold": 0.6, "k": 8, "max_score": 0.92, "hub_degree": 3 },
+  "gaps": [
+    { "a": "docs/a.md", "b": "misc/ghost.md", "score": 0.9, "sig": "weaklink|docs/a.md|misc/ghost.md" }
+  ]
+}

graphmark-0.1.1/tests/fixtures/gaps/similar_oog.json

@@ -0,0 +1,4 @@
+{
+  "_note": "Out-of-graph similar_fn for afk #10: docs/a.md is 'similar' to misc/ghost.md, which is NOT a node in the graph (no such file). Exercises the defensive-degree path — gaps() must rank it (ghost = non-hub, degree 0) instead of crashing on G.degree(missing).",
+  "docs/a.md": [["misc/ghost.md", 0.9]]
+}

graphmark-0.1.1/tests/test_gaps_oog.py

@@ -0,0 +1,41 @@
+"""gaps() must not crash when similar_fn returns a note outside the graph (afk #10)."""
+
+from __future__ import annotations
+
+import json
+from pathlib import Path
+
+from graphmark.config import load_config
+from graphmark.graph import NormalizeResolver, VaultGraph
+from graphmark.metrics import gaps
+from graphmark.parse import WikilinkExtractor
+
+FIXTURE_DIR = Path(__file__).parent / "fixtures" / "gaps"
+EXPECTED = json.loads((FIXTURE_DIR / "expected_oog.json").read_text())
+_MAP = {
+    k: v
+    for k, v in json.loads((FIXTURE_DIR / "similar_oog.json").read_text()).items()
+    if not k.startswith("_")
+}
+
+
+def _similar_fn(rel, k):
+    return [tuple(x) for x in _MAP.get(rel, [])][:k]
+
+
+def _graph():
+    cfg = load_config(FIXTURE_DIR / "config.toml")
+    return VaultGraph.build(cfg, WikilinkExtractor(), NormalizeResolver())
+
+
+def test_gaps_tolerates_out_of_graph_nodes():
+    p = EXPECTED["params"]
+    result = gaps(
+        _graph(),
+        _similar_fn,
+        threshold=p["threshold"],
+        k=p["k"],
+        max_score=p["max_score"],
+        hub_degree=p["hub_degree"],
+    )
+    assert result == EXPECTED["gaps"]