graphifyy 0.4.2__tar.gz → 0.4.4__tar.gz

{graphifyy-0.4.2 → graphifyy-0.4.4}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: graphifyy
-Version: 0.4.2
+Version: 0.4.4
 Summary: AI coding assistant skill (Claude Code, Codex, OpenCode, Cursor, OpenClaw, Factory Droid, Trae) - turn any folder of code, docs, papers, images, or videos into a queryable knowledge graph
 License: MIT License
         
@@ -91,10 +91,11 @@ Dynamic: license-file
 [![PyPI](https://img.shields.io/pypi/v/graphifyy)](https://pypi.org/project/graphifyy/)
 [![Downloads](https://static.pepy.tech/badge/graphifyy/month)](https://pepy.tech/project/graphifyy)
 [![Sponsor](https://img.shields.io/badge/sponsor-safishamsi-ea4aaa?logo=github-sponsors)](https://github.com/sponsors/safishamsi)
+[![LinkedIn](https://img.shields.io/badge/LinkedIn-Safi%20Shamsi-0077B5?logo=linkedin)](https://www.linkedin.com/in/safi-shamsi)
 
 **An AI coding assistant skill.** Type `/graphify` in Claude Code, Codex, OpenCode, Cursor, Gemini CLI, GitHub Copilot CLI, Aider, OpenClaw, Factory Droid, or Trae - it reads your files, builds a knowledge graph, and gives you back structure you didn't know was there. Understand a codebase faster. Find the "why" behind architectural decisions.
 
-Fully multimodal. Drop in code, PDFs, markdown, screenshots, diagrams, whiteboard photos, images in other languages, or video and audio files - graphify extracts concepts and relationships from all of it and connects them into one graph. Videos are transcribed with Whisper using a domain-aware prompt derived from your corpus. 20 languages supported via tree-sitter AST (Python, JS, TS, Go, Rust, Java, C, C++, Ruby, C#, Kotlin, Scala, PHP, Swift, Lua, Zig, PowerShell, Elixir, Objective-C, Julia).
+Fully multimodal. Drop in code, PDFs, markdown, screenshots, diagrams, whiteboard photos, images in other languages, or video and audio files - graphify extracts concepts and relationships from all of it and connects them into one graph. Videos are transcribed with Whisper using a domain-aware prompt derived from your corpus. 22 languages supported via tree-sitter AST (Python, JS, TS, Go, Rust, Java, C, C++, Ruby, C#, Kotlin, Scala, PHP, Swift, Lua, Zig, PowerShell, Elixir, Objective-C, Julia, Vue, Svelte).
 
 > Andrej Karpathy keeps a `/raw` folder where he drops papers, tweets, screenshots, and notes. graphify is the answer to that problem - 71.5x fewer tokens per query vs reading the raw files, persistent across sessions, honest about what it found vs guessed.
 
@@ -332,7 +333,7 @@ Works with any mix of file types:
 
 | Type | Extensions | Extraction |
 |------|-----------|------------|
-| Code | `.py .ts .js .jsx .tsx .go .rs .java .c .cpp .rb .cs .kt .scala .php .swift .lua .zig .ps1 .ex .exs .m .mm .jl` | AST via tree-sitter + call-graph + docstring/comment rationale |
+| Code | `.py .ts .js .jsx .tsx .go .rs .java .c .cpp .rb .cs .kt .scala .php .swift .lua .zig .ps1 .ex .exs .m .mm .jl .vue .svelte` | AST via tree-sitter + call-graph + docstring/comment rationale |
 | Docs | `.md .txt .rst` | Concepts + relationships + design rationale via Claude |
 | Office | `.docx .xlsx` | Converted to markdown then extracted via Claude (requires `pip install graphifyy[office]`) |
 | Papers | `.pdf` | Citation mining + concept extraction |

{graphifyy-0.4.2 → graphifyy-0.4.4}/README.md

@@ -6,10 +6,11 @@
 [![PyPI](https://img.shields.io/pypi/v/graphifyy)](https://pypi.org/project/graphifyy/)
 [![Downloads](https://static.pepy.tech/badge/graphifyy/month)](https://pepy.tech/project/graphifyy)
 [![Sponsor](https://img.shields.io/badge/sponsor-safishamsi-ea4aaa?logo=github-sponsors)](https://github.com/sponsors/safishamsi)
+[![LinkedIn](https://img.shields.io/badge/LinkedIn-Safi%20Shamsi-0077B5?logo=linkedin)](https://www.linkedin.com/in/safi-shamsi)
 
 **An AI coding assistant skill.** Type `/graphify` in Claude Code, Codex, OpenCode, Cursor, Gemini CLI, GitHub Copilot CLI, Aider, OpenClaw, Factory Droid, or Trae - it reads your files, builds a knowledge graph, and gives you back structure you didn't know was there. Understand a codebase faster. Find the "why" behind architectural decisions.
 
-Fully multimodal. Drop in code, PDFs, markdown, screenshots, diagrams, whiteboard photos, images in other languages, or video and audio files - graphify extracts concepts and relationships from all of it and connects them into one graph. Videos are transcribed with Whisper using a domain-aware prompt derived from your corpus. 20 languages supported via tree-sitter AST (Python, JS, TS, Go, Rust, Java, C, C++, Ruby, C#, Kotlin, Scala, PHP, Swift, Lua, Zig, PowerShell, Elixir, Objective-C, Julia).
+Fully multimodal. Drop in code, PDFs, markdown, screenshots, diagrams, whiteboard photos, images in other languages, or video and audio files - graphify extracts concepts and relationships from all of it and connects them into one graph. Videos are transcribed with Whisper using a domain-aware prompt derived from your corpus. 22 languages supported via tree-sitter AST (Python, JS, TS, Go, Rust, Java, C, C++, Ruby, C#, Kotlin, Scala, PHP, Swift, Lua, Zig, PowerShell, Elixir, Objective-C, Julia, Vue, Svelte).
 
 > Andrej Karpathy keeps a `/raw` folder where he drops papers, tweets, screenshots, and notes. graphify is the answer to that problem - 71.5x fewer tokens per query vs reading the raw files, persistent across sessions, honest about what it found vs guessed.
 
@@ -247,7 +248,7 @@ Works with any mix of file types:
 
 | Type | Extensions | Extraction |
 |------|-----------|------------|
-| Code | `.py .ts .js .jsx .tsx .go .rs .java .c .cpp .rb .cs .kt .scala .php .swift .lua .zig .ps1 .ex .exs .m .mm .jl` | AST via tree-sitter + call-graph + docstring/comment rationale |
+| Code | `.py .ts .js .jsx .tsx .go .rs .java .c .cpp .rb .cs .kt .scala .php .swift .lua .zig .ps1 .ex .exs .m .mm .jl .vue .svelte` | AST via tree-sitter + call-graph + docstring/comment rationale |
 | Docs | `.md .txt .rst` | Concepts + relationships + design rationale via Claude |
 | Office | `.docx .xlsx` | Converted to markdown then extracted via Claude (requires `pip install graphifyy[office]`) |
 | Papers | `.pdf` | Citation mining + concept extraction |

{graphifyy-0.4.2 → graphifyy-0.4.4}/graphify/__main__.py

@@ -428,7 +428,7 @@ _CODEX_HOOK = {
                         "type": "command",
                         "command": (
                             "[ -f graphify-out/graph.json ] && "
-                            r"""echo '{"hookSpecificOutput":{"hookEventName":"PreToolUse","permissionDecision":"allow"},"systemMessage":"graphify: Knowledge graph exists. Read graphify-out/GRAPH_REPORT.md for god nodes and community structure before searching raw files."}' """
+                            r"""echo '{"hookSpecificOutput":{"hookEventName":"PreToolUse","additionalContext":"graphify: Knowledge graph exists. Read graphify-out/GRAPH_REPORT.md for god nodes and community structure before searching raw files."}}' """
                             "|| true"
                         ),
                     }

{graphifyy-0.4.2 → graphifyy-0.4.4}/graphify/analyze.py

@@ -218,7 +218,11 @@ def _cross_file_surprises(G: nx.Graph, communities: dict[int, list[str]], top_n:
 
         score, reasons = _surprise_score(G, u, v, data, node_community, u_source, v_source)
         src_id = data.get("_src", u)
+        if src_id not in G.nodes:
+            src_id = u
         tgt_id = data.get("_tgt", v)
+        if tgt_id not in G.nodes:
+            tgt_id = v
         candidates.append({
             "_score": score,
             "source": G.nodes[src_id].get("label", src_id),
@@ -294,7 +298,11 @@ def _cross_community_surprises(
         # This edge crosses community boundaries - interesting
         confidence = data.get("confidence", "EXTRACTED")
         src_id = data.get("_src", u)
+        if src_id not in G.nodes:
+            src_id = u
         tgt_id = data.get("_tgt", v)
+        if tgt_id not in G.nodes:
+            tgt_id = v
         surprises.append({
             "source": G.nodes[src_id].get("label", src_id),
             "target": G.nodes[tgt_id].get("label", tgt_id),
@@ -392,7 +400,11 @@ def suggest_questions(
             others = []
             for u, v, d in inferred[:2]:
                 src_id = d.get("_src", u)
+                if src_id not in G.nodes:
+                    src_id = u
                 tgt_id = d.get("_tgt", v)
+                if tgt_id not in G.nodes:
+                    tgt_id = v
                 other_id = tgt_id if src_id == node_id else src_id
                 others.append(G.nodes[other_id].get("label", other_id))
             questions.append({

{graphifyy-0.4.2 → graphifyy-0.4.4}/graphify/detect.py

@@ -18,7 +18,7 @@ class FileType(str, Enum):
 
 _MANIFEST_PATH = "graphify-out/manifest.json"
 
-CODE_EXTENSIONS = {'.py', '.ts', '.js', '.jsx', '.tsx', '.go', '.rs', '.java', '.cpp', '.cc', '.cxx', '.c', '.h', '.hpp', '.rb', '.swift', '.kt', '.kts', '.cs', '.scala', '.php', '.lua', '.toc', '.zig', '.ps1', '.ex', '.exs', '.m', '.mm', '.jl'}
+CODE_EXTENSIONS = {'.py', '.ts', '.js', '.jsx', '.tsx', '.go', '.rs', '.java', '.cpp', '.cc', '.cxx', '.c', '.h', '.hpp', '.rb', '.swift', '.kt', '.kts', '.cs', '.scala', '.php', '.lua', '.toc', '.zig', '.ps1', '.ex', '.exs', '.m', '.mm', '.jl', '.vue', '.svelte'}
 DOC_EXTENSIONS = {'.md', '.txt', '.rst'}
 PAPER_EXTENSIONS = {'.pdf'}
 IMAGE_EXTENSIONS = {'.png', '.jpg', '.jpeg', '.gif', '.webp', '.svg'}
@@ -241,6 +241,13 @@ _SKIP_DIRS = {
     ".tox", ".eggs", "*.egg-info",
 }
 
+# Large generated files that are never useful to extract
+_SKIP_FILES = {
+    "package-lock.json", "yarn.lock", "pnpm-lock.yaml",
+    "Cargo.lock", "poetry.lock", "Gemfile.lock",
+    "composer.lock", "go.sum", "go.work.sum",
+}
+
 def _is_noise_dir(part: str) -> bool:
     """Return True if this directory name looks like a venv, cache, or dep dir."""
     if part in _SKIP_DIRS:
@@ -357,6 +364,8 @@ def detect(root: Path, *, follow_symlinks: bool = False) -> dict:
                     and not _is_ignored(dp / d, root, ignore_patterns)
                 ]
             for fname in filenames:
+                if fname in _SKIP_FILES:
+                    continue
                 p = dp / fname
                 if p not in seen:
                     seen.add(p)

{graphifyy-0.4.2 → graphifyy-0.4.4}/graphify/extract.py

@@ -112,8 +112,18 @@ def _import_python(node, source: bytes, file_nid: str, stem: str, edges: list, s
     elif t == "import_from_statement":
         module_node = node.child_by_field_name("module_name")
         if module_node:
-            raw = _read_text(module_node, source).lstrip(".")
-            tgt_nid = _make_id(raw)
+            raw = _read_text(module_node, source)
+            if raw.startswith("."):
+                # Relative import - resolve to full path so IDs match file node IDs
+                dots = len(raw) - len(raw.lstrip("."))
+                module_name = raw.lstrip(".")
+                base = Path(str_path).parent
+                for _ in range(dots - 1):
+                    base = base.parent
+                rel = (module_name.replace(".", "/") + ".py") if module_name else "__init__.py"
+                tgt_nid = _make_id(str(base / rel))
+            else:
+                tgt_nid = _make_id(raw)
             edges.append({
                 "source": file_nid,
                 "target": tgt_nid,
@@ -129,18 +139,32 @@ def _import_js(node, source: bytes, file_nid: str, stem: str, edges: list, str_p
     for child in node.children:
         if child.type == "string":
             raw = _read_text(child, source).strip("'\"` ")
-            module_name = raw.lstrip("./").split("/")[-1]
-            if module_name:
+            if not raw:
+                break
+            if raw.startswith("."):
+                # Relative import - resolve to full path so IDs match file node IDs
+                resolved = Path(str_path).parent / raw
+                # TypeScript ESM: imports written as .js but actual file is .ts/.tsx
+                if resolved.suffix == ".js":
+                    resolved = resolved.with_suffix(".ts")
+                elif resolved.suffix == ".jsx":
+                    resolved = resolved.with_suffix(".tsx")
+                tgt_nid = _make_id(str(resolved))
+            else:
+                # Bare/scoped import (node_modules) - use last segment; dropped as external
+                module_name = raw.split("/")[-1]
+                if not module_name:
+                    break
                 tgt_nid = _make_id(module_name)
-                edges.append({
-                    "source": file_nid,
-                    "target": tgt_nid,
-                    "relation": "imports_from",
-                    "confidence": "EXTRACTED",
-                    "source_file": str_path,
-                    "source_location": f"L{node.start_point[0] + 1}",
-                    "weight": 1.0,
-                })
+            edges.append({
+                "source": file_nid,
+                "target": tgt_nid,
+                "relation": "imports_from",
+                "confidence": "EXTRACTED",
+                "source_file": str_path,
+                "source_location": f"L{node.start_point[0] + 1}",
+                "weight": 1.0,
+            })
             break
 
 
@@ -2622,6 +2646,8 @@ def extract(paths: list[Path]) -> dict:
         ".m": extract_objc,
         ".mm": extract_objc,
         ".jl": extract_julia,
+        ".vue": extract_js,
+        ".svelte": extract_js,
     }
 
     total = len(paths)

{graphifyy-0.4.2 → graphifyy-0.4.4}/graphify/hooks.py

@@ -20,13 +20,21 @@ if [ -n "$GRAPHIFY_BIN" ]; then
     # Allowlist: only keep characters valid in a filesystem path to prevent
     # injection if the shebang contains shell metacharacters
     case "$GRAPHIFY_PYTHON" in
-        *[!a-zA-Z0-9/_.-]*) GRAPHIFY_PYTHON="python3" ;;
+        *[!a-zA-Z0-9/_.-]*) GRAPHIFY_PYTHON="" ;;
     esac
-    if ! "$GRAPHIFY_PYTHON" -c "import graphify" 2>/dev/null; then
+    if [ -n "$GRAPHIFY_PYTHON" ] && ! "$GRAPHIFY_PYTHON" -c "import graphify" 2>/dev/null; then
+        GRAPHIFY_PYTHON=""
+    fi
+fi
+# Fall back: try python3, then python (Windows has no python3 shim)
+if [ -z "$GRAPHIFY_PYTHON" ]; then
+    if command -v python3 >/dev/null 2>&1 && python3 -c "import graphify" 2>/dev/null; then
         GRAPHIFY_PYTHON="python3"
+    elif command -v python >/dev/null 2>&1 && python -c "import graphify" 2>/dev/null; then
+        GRAPHIFY_PYTHON="python"
+    else
+        exit 0
     fi
-else
-    GRAPHIFY_PYTHON="python3"
 fi
 """
 

{graphifyy-0.4.2 → graphifyy-0.4.4}/graphify/watch.py

@@ -34,6 +34,28 @@ def _rebuild_code(watch_path: Path, *, follow_symlinks: bool = False) -> bool:
 
         result = extract(code_files)
 
+        # Preserve semantic nodes/edges from a previous full run.
+        # AST-only rebuild replaces code nodes; doc/paper/image nodes are kept.
+        out = watch_path / "graphify-out"
+        existing_graph = out / "graph.json"
+        if existing_graph.exists():
+            try:
+                existing = json.loads(existing_graph.read_text(encoding="utf-8"))
+                code_ids = {n["id"] for n in existing.get("nodes", []) if n.get("file_type") == "code"}
+                sem_nodes = [n for n in existing.get("nodes", []) if n.get("file_type") != "code"]
+                sem_edges = [e for e in existing.get("edges", [])
+                             if e.get("confidence") in ("INFERRED", "AMBIGUOUS")
+                             or (e.get("source") not in code_ids and e.get("target") not in code_ids)]
+                result = {
+                    "nodes": result["nodes"] + sem_nodes,
+                    "edges": result["edges"] + sem_edges,
+                    "hyperedges": existing.get("hyperedges", []),
+                    "input_tokens": 0,
+                    "output_tokens": 0,
+                }
+            except Exception:
+                pass  # corrupt graph.json - proceed with AST-only
+
         detection = {
             "files": {"code": [str(f) for f in code_files], "document": [], "paper": [], "image": []},
             "total_files": len(code_files),
@@ -48,7 +70,6 @@ def _rebuild_code(watch_path: Path, *, follow_symlinks: bool = False) -> bool:
         labels = {cid: "Community " + str(cid) for cid in communities}
         questions = suggest_questions(G, communities, labels)
 
-        out = watch_path / "graphify-out"
         out.mkdir(exist_ok=True)
 
         report = generate(G, communities, cohesion, labels, gods, surprises, detection,

{graphifyy-0.4.2 → graphifyy-0.4.4}/graphifyy.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: graphifyy
-Version: 0.4.2
+Version: 0.4.4
 Summary: AI coding assistant skill (Claude Code, Codex, OpenCode, Cursor, OpenClaw, Factory Droid, Trae) - turn any folder of code, docs, papers, images, or videos into a queryable knowledge graph
 License: MIT License
         
@@ -91,10 +91,11 @@ Dynamic: license-file
 [![PyPI](https://img.shields.io/pypi/v/graphifyy)](https://pypi.org/project/graphifyy/)
 [![Downloads](https://static.pepy.tech/badge/graphifyy/month)](https://pepy.tech/project/graphifyy)
 [![Sponsor](https://img.shields.io/badge/sponsor-safishamsi-ea4aaa?logo=github-sponsors)](https://github.com/sponsors/safishamsi)
+[![LinkedIn](https://img.shields.io/badge/LinkedIn-Safi%20Shamsi-0077B5?logo=linkedin)](https://www.linkedin.com/in/safi-shamsi)
 
 **An AI coding assistant skill.** Type `/graphify` in Claude Code, Codex, OpenCode, Cursor, Gemini CLI, GitHub Copilot CLI, Aider, OpenClaw, Factory Droid, or Trae - it reads your files, builds a knowledge graph, and gives you back structure you didn't know was there. Understand a codebase faster. Find the "why" behind architectural decisions.
 
-Fully multimodal. Drop in code, PDFs, markdown, screenshots, diagrams, whiteboard photos, images in other languages, or video and audio files - graphify extracts concepts and relationships from all of it and connects them into one graph. Videos are transcribed with Whisper using a domain-aware prompt derived from your corpus. 20 languages supported via tree-sitter AST (Python, JS, TS, Go, Rust, Java, C, C++, Ruby, C#, Kotlin, Scala, PHP, Swift, Lua, Zig, PowerShell, Elixir, Objective-C, Julia).
+Fully multimodal. Drop in code, PDFs, markdown, screenshots, diagrams, whiteboard photos, images in other languages, or video and audio files - graphify extracts concepts and relationships from all of it and connects them into one graph. Videos are transcribed with Whisper using a domain-aware prompt derived from your corpus. 22 languages supported via tree-sitter AST (Python, JS, TS, Go, Rust, Java, C, C++, Ruby, C#, Kotlin, Scala, PHP, Swift, Lua, Zig, PowerShell, Elixir, Objective-C, Julia, Vue, Svelte).
 
 > Andrej Karpathy keeps a `/raw` folder where he drops papers, tweets, screenshots, and notes. graphify is the answer to that problem - 71.5x fewer tokens per query vs reading the raw files, persistent across sessions, honest about what it found vs guessed.
 
@@ -332,7 +333,7 @@ Works with any mix of file types:
 
 | Type | Extensions | Extraction |
 |------|-----------|------------|
-| Code | `.py .ts .js .jsx .tsx .go .rs .java .c .cpp .rb .cs .kt .scala .php .swift .lua .zig .ps1 .ex .exs .m .mm .jl` | AST via tree-sitter + call-graph + docstring/comment rationale |
+| Code | `.py .ts .js .jsx .tsx .go .rs .java .c .cpp .rb .cs .kt .scala .php .swift .lua .zig .ps1 .ex .exs .m .mm .jl .vue .svelte` | AST via tree-sitter + call-graph + docstring/comment rationale |
 | Docs | `.md .txt .rst` | Concepts + relationships + design rationale via Claude |
 | Office | `.docx .xlsx` | Converted to markdown then extracted via Claude (requires `pip install graphifyy[office]`) |
 | Papers | `.pdf` | Citation mining + concept extraction |

{graphifyy-0.4.2 → graphifyy-0.4.4}/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "graphifyy"
-version = "0.4.2"
+version = "0.4.4"
 description = "AI coding assistant skill (Claude Code, Codex, OpenCode, Cursor, OpenClaw, Factory Droid, Trae) - turn any folder of code, docs, papers, images, or videos into a queryable knowledge graph"
 readme = "README.md"
 license = { file = "LICENSE" }