graph-seeder 1.0.0.dev8__tar.gz → 1.0.0.dev10__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {graph_seeder-1.0.0.dev8 → graph_seeder-1.0.0.dev10}/PKG-INFO +1 -2
- {graph_seeder-1.0.0.dev8 → graph_seeder-1.0.0.dev10}/pyproject.toml +1 -2
- {graph_seeder-1.0.0.dev8 → graph_seeder-1.0.0.dev10}/src/graph_seeder/SubgraphExtractor.py +10 -3
- {graph_seeder-1.0.0.dev8 → graph_seeder-1.0.0.dev10}/src/graph_seeder/wrapper/sparql/client/SparqlClient.py +42 -27
- {graph_seeder-1.0.0.dev8 → graph_seeder-1.0.0.dev10}/uv.lock +140 -196
- {graph_seeder-1.0.0.dev8 → graph_seeder-1.0.0.dev10}/.github/workflows/publish.yml +0 -0
- {graph_seeder-1.0.0.dev8 → graph_seeder-1.0.0.dev10}/.gitignore +0 -0
- {graph_seeder-1.0.0.dev8 → graph_seeder-1.0.0.dev10}/README.md +0 -0
- {graph_seeder-1.0.0.dev8 → graph_seeder-1.0.0.dev10}/requirements.txt +0 -0
- {graph_seeder-1.0.0.dev8 → graph_seeder-1.0.0.dev10}/src/graph_seeder/GraphSeeder.py +0 -0
- {graph_seeder-1.0.0.dev8 → graph_seeder-1.0.0.dev10}/src/graph_seeder/configs/dbpedia_default.json +0 -0
- {graph_seeder-1.0.0.dev8 → graph_seeder-1.0.0.dev10}/src/graph_seeder/configs/default.json +0 -0
- {graph_seeder-1.0.0.dev8 → graph_seeder-1.0.0.dev10}/src/graph_seeder/configs/europeana_default.json +0 -0
- {graph_seeder-1.0.0.dev8 → graph_seeder-1.0.0.dev10}/src/graph_seeder/configs/pgxlod_default.json +0 -0
- {graph_seeder-1.0.0.dev8 → graph_seeder-1.0.0.dev10}/src/graph_seeder/configs/wikidata_default.json +0 -0
- {graph_seeder-1.0.0.dev8 → graph_seeder-1.0.0.dev10}/src/graph_seeder/densification/GraphConnector.py +0 -0
- {graph_seeder-1.0.0.dev8 → graph_seeder-1.0.0.dev10}/src/graph_seeder/extraction/BFS/BFS.py +0 -0
- {graph_seeder-1.0.0.dev8 → graph_seeder-1.0.0.dev10}/src/graph_seeder/extraction/ExtractionStrategy.py +0 -0
- {graph_seeder-1.0.0.dev8 → graph_seeder-1.0.0.dev10}/src/graph_seeder/extraction/Hop/HopExpansion.py +0 -0
- {graph_seeder-1.0.0.dev8 → graph_seeder-1.0.0.dev10}/src/graph_seeder/models/RDFNode.py +0 -0
- {graph_seeder-1.0.0.dev8 → graph_seeder-1.0.0.dev10}/src/graph_seeder/utils/ConsoleUI.py +0 -0
- {graph_seeder-1.0.0.dev8 → graph_seeder-1.0.0.dev10}/src/graph_seeder/utils/Factory.py +0 -0
- {graph_seeder-1.0.0.dev8 → graph_seeder-1.0.0.dev10}/src/graph_seeder/utils/GraphExporter.py +0 -0
- {graph_seeder-1.0.0.dev8 → graph_seeder-1.0.0.dev10}/src/graph_seeder/utils/GraphStatistics.py +0 -0
- {graph_seeder-1.0.0.dev8 → graph_seeder-1.0.0.dev10}/src/graph_seeder/utils/URIManager.py +0 -0
- {graph_seeder-1.0.0.dev8 → graph_seeder-1.0.0.dev10}/src/graph_seeder/utils/utils.py +0 -0
- {graph_seeder-1.0.0.dev8 → graph_seeder-1.0.0.dev10}/src/graph_seeder/wrapper/NeighborhoodWrapper.py +0 -0
- {graph_seeder-1.0.0.dev8 → graph_seeder-1.0.0.dev10}/src/graph_seeder/wrapper/hashmap/HashMapWrapper.py +0 -0
- {graph_seeder-1.0.0.dev8 → graph_seeder-1.0.0.dev10}/src/graph_seeder/wrapper/sparql/BaseClient.py +0 -0
- {graph_seeder-1.0.0.dev8 → graph_seeder-1.0.0.dev10}/src/graph_seeder/wrapper/sparql/GraphWrapper.py +0 -0
- {graph_seeder-1.0.0.dev8 → graph_seeder-1.0.0.dev10}/src/graph_seeder/wrapper/sparql/SparqlQueryBuilder.py +0 -0
- {graph_seeder-1.0.0.dev8 → graph_seeder-1.0.0.dev10}/src/graph_seeder/wrapper/sparql/client/TurtleClient.py +0 -0
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Metadata-Version: 2.4
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Name: graph-seeder
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Version: 1.0.0.
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Version: 1.0.0.dev10
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Summary: A powerful tool to extract and densify subgraphs from Knowledge Graphs via SPARQL or LMDB, with different extraction strategies.
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Requires-Python: >=3.9
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Requires-Dist: lmdb>=2.2.0
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@@ -9,7 +9,6 @@ Requires-Dist: pandas<3.0.0,>=2.3.3
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Requires-Dist: rdflib>=7.6.0
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Requires-Dist: requests>=2.32.5
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Requires-Dist: rich>=15.0.0
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Requires-Dist: sparqlwrapper>=2.0.0
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Requires-Dist: urllib3>=2.6.3
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Description-Content-Type: text/markdown
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@@ -7,7 +7,7 @@ packages = ["src/graph_seeder"]
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[project]
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name = "graph-seeder"
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version = "1.0.0.
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version = "1.0.0.dev10"
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description = "A powerful tool to extract and densify subgraphs from Knowledge Graphs via SPARQL or LMDB, with different extraction strategies."
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readme = "README.md"
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requires-python = ">=3.9"
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@@ -18,7 +18,6 @@ dependencies = [
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"rdflib>=7.6.0",
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"requests>=2.32.5",
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"rich>=15.0.0",
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"sparqlwrapper>=2.0.0",
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"urllib3>=2.6.3",
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]
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@@ -277,6 +277,10 @@ class SubgraphExtractor:
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seeds_found.update(clean_nodes)
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self.stats["found"] += 1
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if not all_results:
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logger.error("No paths were extracted. Exiting without saving.")
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return [], seeds_found
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self.exporter.save_results(all_results, self.uri_manager)
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self.exporter.save_graph(self.extractor_strategy.graph)
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@@ -383,15 +387,18 @@ class SubgraphExtractor:
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return
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if self.create_all_pairs:
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if len(
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if len(seeds) < 2:
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logger.warning(
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"Not enough unique seeds to create pairs. Proceeding with original structure."
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)
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else:
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logger.info(
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f"Generating all possible pairs from {len(
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f"Generating all possible pairs from {len(seeds)} unique seeds..."
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)
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seeds = list(
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dict.fromkeys([str(seed).strip() for row in seeds for seed in row])
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)
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seeds =
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seeds = list(itertools.combinations(seeds, 2))
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logger.info(f"Created {len(seeds)} pairs to explore.\n")
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all_results, seeds_found = self.extract_subgraph(seeds)
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import logging
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import time
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from
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from SPARQLWrapper.SPARQLExceptions import QueryBadFormed, URITooLong
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import requests
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from requests.exceptions import HTTPError, RequestException
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from graph_seeder.wrapper.sparql.BaseClient import BaseClient
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logger = logging.getLogger("subgraph")
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super().__init__(cfg)
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client_cfg = cfg.get("client", {})
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endpoint = client_cfg.get("endpoint")
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self.endpoint = client_cfg.get("endpoint")
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if not self.endpoint:
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raise ValueError("SPARQL endpoint URL must be provided in config.")
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if not user_agent:
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self.sparql = SPARQLWrapper(endpoint)
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else:
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self.sparql = SPARQLWrapper(endpoint, agent=user_agent)
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self.sparql.setTimeout(client_cfg.get("timeout", 50))
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self.sparql.setReturnFormat(JSON)
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self.timeout = client_cfg.get("timeout", 50)
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self.retry_attempts = client_cfg.get("retry_attempts", 3)
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self.retry_delay = client_cfg.get("retry_delay", 3)
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self.request_delay = client_cfg.get("request_delay", 1)
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self.rate_limit_wait = client_cfg.get("rate_limit_wait", 60)
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self.session = requests.Session()
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headers = {
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"Accept": "application/sparql-results+json",
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}
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user_agent = client_cfg.get("user_agent")
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headers["User-Agent"] = user_agent
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self.session.headers.update(headers)
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def _log_failed_query(self, query: str, error: Exception) -> None:
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Raises:
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RuntimeError: When all retry attempts are exhausted or query is bad.
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"""
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