graph-seeder 1.0.0.dev7__tar.gz → 1.0.0.dev9__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {graph_seeder-1.0.0.dev7 → graph_seeder-1.0.0.dev9}/PKG-INFO +1 -2
- {graph_seeder-1.0.0.dev7 → graph_seeder-1.0.0.dev9}/pyproject.toml +1 -2
- {graph_seeder-1.0.0.dev7 → graph_seeder-1.0.0.dev9}/src/graph_seeder/SubgraphExtractor.py +4 -0
- {graph_seeder-1.0.0.dev7 → graph_seeder-1.0.0.dev9}/src/graph_seeder/densification/GraphConnector.py +1 -3
- {graph_seeder-1.0.0.dev7 → graph_seeder-1.0.0.dev9}/src/graph_seeder/wrapper/sparql/client/SparqlClient.py +42 -27
- {graph_seeder-1.0.0.dev7 → graph_seeder-1.0.0.dev9}/uv.lock +140 -196
- {graph_seeder-1.0.0.dev7 → graph_seeder-1.0.0.dev9}/.github/workflows/publish.yml +0 -0
- {graph_seeder-1.0.0.dev7 → graph_seeder-1.0.0.dev9}/.gitignore +0 -0
- {graph_seeder-1.0.0.dev7 → graph_seeder-1.0.0.dev9}/README.md +0 -0
- {graph_seeder-1.0.0.dev7 → graph_seeder-1.0.0.dev9}/requirements.txt +0 -0
- {graph_seeder-1.0.0.dev7 → graph_seeder-1.0.0.dev9}/src/graph_seeder/GraphSeeder.py +0 -0
- {graph_seeder-1.0.0.dev7 → graph_seeder-1.0.0.dev9}/src/graph_seeder/configs/dbpedia_default.json +0 -0
- {graph_seeder-1.0.0.dev7 → graph_seeder-1.0.0.dev9}/src/graph_seeder/configs/default.json +0 -0
- {graph_seeder-1.0.0.dev7 → graph_seeder-1.0.0.dev9}/src/graph_seeder/configs/europeana_default.json +0 -0
- {graph_seeder-1.0.0.dev7 → graph_seeder-1.0.0.dev9}/src/graph_seeder/configs/pgxlod_default.json +0 -0
- {graph_seeder-1.0.0.dev7 → graph_seeder-1.0.0.dev9}/src/graph_seeder/configs/wikidata_default.json +0 -0
- {graph_seeder-1.0.0.dev7 → graph_seeder-1.0.0.dev9}/src/graph_seeder/extraction/BFS/BFS.py +0 -0
- {graph_seeder-1.0.0.dev7 → graph_seeder-1.0.0.dev9}/src/graph_seeder/extraction/ExtractionStrategy.py +0 -0
- {graph_seeder-1.0.0.dev7 → graph_seeder-1.0.0.dev9}/src/graph_seeder/extraction/Hop/HopExpansion.py +0 -0
- {graph_seeder-1.0.0.dev7 → graph_seeder-1.0.0.dev9}/src/graph_seeder/models/RDFNode.py +0 -0
- {graph_seeder-1.0.0.dev7 → graph_seeder-1.0.0.dev9}/src/graph_seeder/utils/ConsoleUI.py +0 -0
- {graph_seeder-1.0.0.dev7 → graph_seeder-1.0.0.dev9}/src/graph_seeder/utils/Factory.py +0 -0
- {graph_seeder-1.0.0.dev7 → graph_seeder-1.0.0.dev9}/src/graph_seeder/utils/GraphExporter.py +0 -0
- {graph_seeder-1.0.0.dev7 → graph_seeder-1.0.0.dev9}/src/graph_seeder/utils/GraphStatistics.py +0 -0
- {graph_seeder-1.0.0.dev7 → graph_seeder-1.0.0.dev9}/src/graph_seeder/utils/URIManager.py +0 -0
- {graph_seeder-1.0.0.dev7 → graph_seeder-1.0.0.dev9}/src/graph_seeder/utils/utils.py +0 -0
- {graph_seeder-1.0.0.dev7 → graph_seeder-1.0.0.dev9}/src/graph_seeder/wrapper/NeighborhoodWrapper.py +0 -0
- {graph_seeder-1.0.0.dev7 → graph_seeder-1.0.0.dev9}/src/graph_seeder/wrapper/hashmap/HashMapWrapper.py +0 -0
- {graph_seeder-1.0.0.dev7 → graph_seeder-1.0.0.dev9}/src/graph_seeder/wrapper/sparql/BaseClient.py +0 -0
- {graph_seeder-1.0.0.dev7 → graph_seeder-1.0.0.dev9}/src/graph_seeder/wrapper/sparql/GraphWrapper.py +0 -0
- {graph_seeder-1.0.0.dev7 → graph_seeder-1.0.0.dev9}/src/graph_seeder/wrapper/sparql/SparqlQueryBuilder.py +0 -0
- {graph_seeder-1.0.0.dev7 → graph_seeder-1.0.0.dev9}/src/graph_seeder/wrapper/sparql/client/TurtleClient.py +0 -0
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Metadata-Version: 2.4
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Name: graph-seeder
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Version: 1.0.0.
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Version: 1.0.0.dev9
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Summary: A powerful tool to extract and densify subgraphs from Knowledge Graphs via SPARQL or LMDB, with different extraction strategies.
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Requires-Python: >=3.9
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Requires-Dist: lmdb>=2.2.0
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@@ -9,7 +9,6 @@ Requires-Dist: pandas<3.0.0,>=2.3.3
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Requires-Dist: rdflib>=7.6.0
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Requires-Dist: requests>=2.32.5
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Requires-Dist: rich>=15.0.0
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Requires-Dist: sparqlwrapper>=2.0.0
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Requires-Dist: urllib3>=2.6.3
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Description-Content-Type: text/markdown
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@@ -7,7 +7,7 @@ packages = ["src/graph_seeder"]
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[project]
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name = "graph-seeder"
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version = "1.0.0.
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version = "1.0.0.dev9"
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description = "A powerful tool to extract and densify subgraphs from Knowledge Graphs via SPARQL or LMDB, with different extraction strategies."
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readme = "README.md"
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requires-python = ">=3.9"
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"rdflib>=7.6.0",
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"requests>=2.32.5",
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"rich>=15.0.0",
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"sparqlwrapper>=2.0.0",
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"urllib3>=2.6.3",
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]
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@@ -277,6 +277,10 @@ class SubgraphExtractor:
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seeds_found.update(clean_nodes)
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self.stats["found"] += 1
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if not all_results:
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logger.error("No paths were extracted. Exiting without saving.")
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return [], seeds_found
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self.exporter.save_results(all_results, self.uri_manager)
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self.exporter.save_graph(self.extractor_strategy.graph)
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{graph_seeder-1.0.0.dev7 → graph_seeder-1.0.0.dev9}/src/graph_seeder/densification/GraphConnector.py
RENAMED
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@@ -119,9 +119,7 @@ class GraphConnector:
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for s, p, o in path_triplets:
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self.graph.add_edge(s.value, o.value)
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else:
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failed_component_pairs.add(
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tuple(sorted([tuple(seeds_a), tuple(seeds_b)]))
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)
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failed_component_pairs.add(pair_id)
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final_triplets_count = sum(len(p.get("triples", [])) for p in current_results)
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logger.info(
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import logging
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import time
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from
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from SPARQLWrapper.SPARQLExceptions import QueryBadFormed, URITooLong
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import requests
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from requests.exceptions import HTTPError, RequestException
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from graph_seeder.wrapper.sparql.BaseClient import BaseClient
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logger = logging.getLogger("subgraph")
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super().__init__(cfg)
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client_cfg = cfg.get("client", {})
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endpoint = client_cfg.get("endpoint")
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self.endpoint = client_cfg.get("endpoint")
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if not self.endpoint:
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raise ValueError("SPARQL endpoint URL must be provided in config.")
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if not user_agent:
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self.sparql = SPARQLWrapper(endpoint)
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else:
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self.sparql = SPARQLWrapper(endpoint, agent=user_agent)
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self.sparql.setTimeout(client_cfg.get("timeout", 50))
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self.timeout = client_cfg.get("timeout", 50)
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self.retry_attempts = client_cfg.get("retry_attempts", 3)
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self.retry_delay = client_cfg.get("retry_delay", 3)
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self.request_delay = client_cfg.get("request_delay", 1)
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self.rate_limit_wait = client_cfg.get("rate_limit_wait", 60)
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self.session = requests.Session()
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headers = {
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"Accept": "application/sparql-results+json",
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}
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user_agent = client_cfg.get("user_agent")
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headers["User-Agent"] = user_agent
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self.session.headers.update(headers)
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def _log_failed_query(self, query: str, error: Exception) -> None:
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List of binding dicts from the ``results.bindings`` array.
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Raises:
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RuntimeError: When all retry attempts are exhausted or query is bad.
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"""
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{graph_seeder-1.0.0.dev7 → graph_seeder-1.0.0.dev9}/src/graph_seeder/configs/dbpedia_default.json
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{graph_seeder-1.0.0.dev7 → graph_seeder-1.0.0.dev9}/src/graph_seeder/wrapper/sparql/BaseClient.py
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