gpbench 1.0.0__tar.gz → 1.0.3__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (193) hide show
  1. {gpbench-1.0.0 → gpbench-1.0.3}/PKG-INFO +2 -1
  2. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench.egg-info/PKG-INFO +2 -1
  3. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench.egg-info/requires.txt +1 -0
  4. {gpbench-1.0.0 → gpbench-1.0.3}/pyproject.toml +3 -1
  5. {gpbench-1.0.0 → gpbench-1.0.3}/README.md +0 -0
  6. {gpbench-1.0.0 → gpbench-1.0.3}/gp_agent_tool/compute_dataset_feature.py +0 -0
  7. {gpbench-1.0.0 → gpbench-1.0.3}/gp_agent_tool/config.py +0 -0
  8. {gpbench-1.0.0 → gpbench-1.0.3}/gp_agent_tool/experience/create_masked_dataset_summary.py +0 -0
  9. {gpbench-1.0.0 → gpbench-1.0.3}/gp_agent_tool/experience/dataset_summary_info.py +0 -0
  10. {gpbench-1.0.0 → gpbench-1.0.3}/gp_agent_tool/experience/experience_info.py +0 -0
  11. {gpbench-1.0.0 → gpbench-1.0.3}/gp_agent_tool/experience/get_matched_experience.py +0 -0
  12. {gpbench-1.0.0 → gpbench-1.0.3}/gp_agent_tool/llm_client.py +0 -0
  13. {gpbench-1.0.0 → gpbench-1.0.3}/gp_agent_tool/logging_utils.py +0 -0
  14. {gpbench-1.0.0 → gpbench-1.0.3}/gp_agent_tool/main.py +0 -0
  15. {gpbench-1.0.0 → gpbench-1.0.3}/gp_agent_tool/read_agent/__init__.py +0 -0
  16. {gpbench-1.0.0 → gpbench-1.0.3}/gp_agent_tool/read_agent/nodes.py +0 -0
  17. {gpbench-1.0.0 → gpbench-1.0.3}/gp_agent_tool/read_agent/prompts.py +0 -0
  18. {gpbench-1.0.0 → gpbench-1.0.3}/gp_agent_tool/read_agent/python_repl_tool.py +0 -0
  19. {gpbench-1.0.0 → gpbench-1.0.3}/gp_agent_tool/read_agent/state.py +0 -0
  20. {gpbench-1.0.0 → gpbench-1.0.3}/gp_agent_tool/read_agent/workflow.py +0 -0
  21. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/__init__.py +0 -0
  22. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/_selftest.py +0 -0
  23. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/BayesA/BayesA_class.py +0 -0
  24. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/BayesA/__init__.py +0 -0
  25. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/BayesA/_bayesfromR.py +0 -0
  26. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/BayesA/_param_free_base_model.py +0 -0
  27. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/BayesA/bayesAfromR.py +0 -0
  28. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/BayesB/BayesB_class.py +0 -0
  29. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/BayesB/__init__.py +0 -0
  30. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/BayesB/_bayesfromR.py +0 -0
  31. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/BayesB/_param_free_base_model.py +0 -0
  32. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/BayesB/bayesBfromR.py +0 -0
  33. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/BayesC/BayesC_class.py +0 -0
  34. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/BayesC/__init__.py +0 -0
  35. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/BayesC/_bayesfromR.py +0 -0
  36. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/BayesC/_param_free_base_model.py +0 -0
  37. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/BayesC/bayesCfromR.py +0 -0
  38. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/CropARNet/CropARNet_class.py +0 -0
  39. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/CropARNet/CropARNet_he_class.py +0 -0
  40. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/CropARNet/__init__.py +0 -0
  41. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/CropARNet/base_CropARNet_class.py +0 -0
  42. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/Cropformer/Cropformer_class.py +0 -0
  43. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/Cropformer/__init__.py +0 -0
  44. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/Cropformer/cropformer_he_class.py +0 -0
  45. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/DL_GWAS/DL_GWAS_class.py +0 -0
  46. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/DL_GWAS/DL_GWAS_he_class.py +0 -0
  47. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/DL_GWAS/__init__.py +0 -0
  48. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/DNNGP/DNNGP_class.py +0 -0
  49. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/DNNGP/DNNGP_he_class.py +0 -0
  50. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/DNNGP/__init__.py +0 -0
  51. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/DNNGP/base_dnngp_class.py +0 -0
  52. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/DeepCCR/DeepCCR_class.py +0 -0
  53. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/DeepCCR/DeepCCR_he_class.py +0 -0
  54. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/DeepCCR/__init__.py +0 -0
  55. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/DeepCCR/base_DeepCCR_class.py +0 -0
  56. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/DeepGS/DeepGS_class.py +0 -0
  57. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/DeepGS/DeepGS_he_class.py +0 -0
  58. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/DeepGS/__init__.py +0 -0
  59. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/DeepGS/base_deepgs_class.py +0 -0
  60. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/EIR/EIR_class.py +0 -0
  61. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/EIR/EIR_he_class.py +0 -0
  62. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/EIR/__init__.py +0 -0
  63. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/EIR/utils/__init__.py +0 -0
  64. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/EIR/utils/array_output_modules.py +0 -0
  65. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/EIR/utils/common.py +0 -0
  66. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/EIR/utils/lcl_layers.py +0 -0
  67. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/EIR/utils/logging.py +0 -0
  68. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/EIR/utils/mlp_layers.py +0 -0
  69. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/EIR/utils/models_locally_connected.py +0 -0
  70. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/EIR/utils/transformer_models.py +0 -0
  71. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/ElasticNet/ElasticNet_class.py +0 -0
  72. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/ElasticNet/ElasticNet_he_class.py +0 -0
  73. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/ElasticNet/__init__.py +0 -0
  74. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/G2PDeep/G2PDeep_he_class.py +0 -0
  75. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/G2PDeep/G2Pdeep_class.py +0 -0
  76. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/G2PDeep/__init__.py +0 -0
  77. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/G2PDeep/base_G2PDeep_class.py +0 -0
  78. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/GBLUP/GBLUP_class.py +0 -0
  79. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/GBLUP/__init__.py +0 -0
  80. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/GEFormer/GEFormer_class.py +0 -0
  81. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/GEFormer/GEFormer_he_class.py +0 -0
  82. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/GEFormer/__init__.py +0 -0
  83. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/GEFormer/gMLP_class.py +0 -0
  84. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/LightGBM/LightGBM_class.py +0 -0
  85. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/LightGBM/LightGBM_he_class.py +0 -0
  86. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/LightGBM/__init__.py +0 -0
  87. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/RF/RF_GPU_class.py +0 -0
  88. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/RF/RF_GPU_he_class.py +0 -0
  89. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/RF/__init__.py +0 -0
  90. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/SVC/SVC_GPU.py +0 -0
  91. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/SVC/SVC_GPU_he.py +0 -0
  92. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/SVC/__init__.py +0 -0
  93. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/SoyDNGP/AlexNet_206_class.py +0 -0
  94. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/SoyDNGP/SoyDNGP_class.py +0 -0
  95. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/SoyDNGP/SoyDNGP_he_class.py +0 -0
  96. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/SoyDNGP/__init__.py +0 -0
  97. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/XGBoost/XGboost_GPU_class.py +0 -0
  98. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/XGBoost/XGboost_GPU_he_class.py +0 -0
  99. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/XGBoost/__init__.py +0 -0
  100. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/__init__.py +0 -0
  101. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/rrBLUP/__init__.py +0 -0
  102. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_class/rrBLUP/rrBLUP_class.py +0 -0
  103. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/BayesA/BayesA.py +0 -0
  104. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/BayesA/__init__.py +0 -0
  105. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/BayesA/_bayesfromR.py +0 -0
  106. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/BayesA/_param_free_base_model.py +0 -0
  107. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/BayesA/bayesAfromR.py +0 -0
  108. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/BayesB/BayesB.py +0 -0
  109. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/BayesB/__init__.py +0 -0
  110. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/BayesB/_bayesfromR.py +0 -0
  111. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/BayesB/_param_free_base_model.py +0 -0
  112. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/BayesB/bayesBfromR.py +0 -0
  113. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/BayesC/BayesC.py +0 -0
  114. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/BayesC/__init__.py +0 -0
  115. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/BayesC/_bayesfromR.py +0 -0
  116. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/BayesC/_param_free_base_model.py +0 -0
  117. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/BayesC/bayesCfromR.py +0 -0
  118. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/CropARNet/CropARNet.py +0 -0
  119. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/CropARNet/CropARNet_Hyperparameters.py +0 -0
  120. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/CropARNet/__init__.py +0 -0
  121. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/CropARNet/base_CropARNet.py +0 -0
  122. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/Cropformer/Cropformer.py +0 -0
  123. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/Cropformer/Cropformer_Hyperparameters.py +0 -0
  124. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/Cropformer/__init__.py +0 -0
  125. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/DL_GWAS/DL_GWAS.py +0 -0
  126. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/DL_GWAS/DL_GWAS_Hyperparameters.py +0 -0
  127. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/DL_GWAS/__init__.py +0 -0
  128. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/DNNGP/DNNGP.py +0 -0
  129. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/DNNGP/DNNGP_Hyperparameters.py +0 -0
  130. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/DNNGP/__init__.py +0 -0
  131. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/DNNGP/base_dnngp.py +0 -0
  132. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/DeepCCR/DeepCCR.py +0 -0
  133. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/DeepCCR/DeepCCR_Hyperparameters.py +0 -0
  134. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/DeepCCR/__init__.py +0 -0
  135. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/DeepCCR/base_DeepCCR.py +0 -0
  136. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/DeepGS/DeepGS.py +0 -0
  137. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/DeepGS/DeepGS_Hyperparameters.py +0 -0
  138. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/DeepGS/__init__.py +0 -0
  139. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/DeepGS/base_deepgs.py +0 -0
  140. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/EIR/EIR.py +0 -0
  141. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/EIR/EIR_Hyperparameters.py +0 -0
  142. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/EIR/__init__.py +0 -0
  143. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/EIR/utils/__init__.py +0 -0
  144. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/EIR/utils/array_output_modules.py +0 -0
  145. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/EIR/utils/common.py +0 -0
  146. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/EIR/utils/lcl_layers.py +0 -0
  147. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/EIR/utils/logging.py +0 -0
  148. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/EIR/utils/mlp_layers.py +0 -0
  149. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/EIR/utils/models_locally_connected.py +0 -0
  150. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/EIR/utils/transformer_models.py +0 -0
  151. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/ElasticNet/ElasticNet.py +0 -0
  152. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/ElasticNet/ElasticNet_he.py +0 -0
  153. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/ElasticNet/__init__.py +0 -0
  154. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/G2PDeep/G2PDeep_Hyperparameters.py +0 -0
  155. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/G2PDeep/G2Pdeep.py +0 -0
  156. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/G2PDeep/__init__.py +0 -0
  157. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/G2PDeep/base_G2PDeep.py +0 -0
  158. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/GBLUP/GBLUP_R.py +0 -0
  159. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/GBLUP/__init__.py +0 -0
  160. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/GEFormer/GEFormer.py +0 -0
  161. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/GEFormer/GEFormer_Hyperparameters.py +0 -0
  162. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/GEFormer/__init__.py +0 -0
  163. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/GEFormer/gMLP.py +0 -0
  164. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/LightGBM/LightGBM.py +0 -0
  165. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/LightGBM/LightGBM_Hyperparameters.py +0 -0
  166. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/LightGBM/__init__.py +0 -0
  167. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/MVP/MVP.py +0 -0
  168. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/MVP/MVP_Hyperparameters.py +0 -0
  169. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/MVP/__init__.py +0 -0
  170. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/MVP/base_MVP.py +0 -0
  171. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/RF/RF_GPU.py +0 -0
  172. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/RF/RF_Hyperparameters.py +0 -0
  173. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/RF/__init__.py +0 -0
  174. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/SVC/SVC_GPU.py +0 -0
  175. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/SVC/SVC_Hyperparameters.py +0 -0
  176. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/SVC/__init__.py +0 -0
  177. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/SoyDNGP/AlexNet_206.py +0 -0
  178. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/SoyDNGP/SoyDNGP.py +0 -0
  179. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/SoyDNGP/SoyDNGP_Hyperparameters.py +0 -0
  180. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/SoyDNGP/__init__.py +0 -0
  181. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/XGBoost/XGboost_GPU.py +0 -0
  182. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/XGBoost/XGboost_Hyperparameters.py +0 -0
  183. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/XGBoost/__init__.py +0 -0
  184. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/__init__.py +0 -0
  185. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/rrBLUP/__init__.py +0 -0
  186. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench/method_reg/rrBLUP/rrBLUP.py +0 -0
  187. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench.egg-info/SOURCES.txt +0 -0
  188. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench.egg-info/dependency_links.txt +0 -0
  189. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench.egg-info/entry_points.txt +0 -0
  190. {gpbench-1.0.0 → gpbench-1.0.3}/gpbench.egg-info/top_level.txt +0 -0
  191. {gpbench-1.0.0 → gpbench-1.0.3}/setup.cfg +0 -0
  192. {gpbench-1.0.0 → gpbench-1.0.3}/tests/test_import.py +0 -0
  193. {gpbench-1.0.0 → gpbench-1.0.3}/tests/test_method.py +0 -0
{gpbench-1.0.0 → gpbench-1.0.3}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: gpbench
3
- Version: 1.0.0
3
+ Version: 1.0.3
4
4
  Summary: A benchmarking toolkit for genomic prediction with multiple methods and LLM-powered analysis
5
5
  Author: GPBench Contributors
6
6
  License: MIT
@@ -105,6 +105,7 @@ Requires-Dist: xxhash==3.6.0
105
105
  Requires-Dist: xlsxwriter==3.2.9
106
106
  Requires-Dist: aislib==0.1.14a0
107
107
  Requires-Dist: swanlab==0.7.6
108
+ Requires-Dist: psutil==7.1.3
108
109
  Provides-Extra: cuda
109
110
  Requires-Dist: nvidia-cublas-cu12==12.8.4.1; extra == "cuda"
110
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  Requires-Dist: nvidia-cuda-cupti-cu12==12.8.90; extra == "cuda"
{gpbench-1.0.0 → gpbench-1.0.3}/gpbench.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: gpbench
3
- Version: 1.0.0
3
+ Version: 1.0.3
4
4
  Summary: A benchmarking toolkit for genomic prediction with multiple methods and LLM-powered analysis
5
5
  Author: GPBench Contributors
6
6
  License: MIT
@@ -105,6 +105,7 @@ Requires-Dist: xxhash==3.6.0
105
105
  Requires-Dist: xlsxwriter==3.2.9
106
106
  Requires-Dist: aislib==0.1.14a0
107
107
  Requires-Dist: swanlab==0.7.6
108
+ Requires-Dist: psutil==7.1.3
108
109
  Provides-Extra: cuda
109
110
  Requires-Dist: nvidia-cublas-cu12==12.8.4.1; extra == "cuda"
110
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  Requires-Dist: nvidia-cuda-cupti-cu12==12.8.90; extra == "cuda"
{gpbench-1.0.0 → gpbench-1.0.3}/gpbench.egg-info/requires.txt RENAMED
@@ -88,6 +88,7 @@ xxhash==3.6.0
88
88
  xlsxwriter==3.2.9
89
89
  aislib==0.1.14a0
90
90
  swanlab==0.7.6
91
+ psutil==7.1.3
91
92
 
92
93
  [cuda]
93
94
  nvidia-cublas-cu12==12.8.4.1
{gpbench-1.0.0 → gpbench-1.0.3}/pyproject.toml RENAMED
@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
4
4
 
5
5
  [project]
6
6
  name = "gpbench"
7
- version = "1.0.0"
7
+ version = "1.0.3"
8
8
  description = "A benchmarking toolkit for genomic prediction with multiple methods and LLM-powered analysis"
9
9
  readme = "README.md"
10
10
  requires-python = ">=3.8"
@@ -81,6 +81,7 @@ dependencies = [
81
81
  "patsy==1.0.2",
82
82
  # R integration
83
83
  "rpy2==3.5.16",
84
+
84
85
  # Network and async
85
86
  "aiohttp==3.13.2",
86
87
  "httpx==0.28.1",
@@ -131,6 +132,7 @@ dependencies = [
131
132
  "xlsxwriter==3.2.9",
132
133
  "aislib==0.1.14a0",
133
134
  "swanlab==0.7.6",
135
+ "psutil==7.1.3",
134
136
  ]
135
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136
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  [project.optional-dependencies]
{gpbench-1.0.0 → gpbench-1.0.3}/README.md RENAMED
File without changes
{gpbench-1.0.0 → gpbench-1.0.3}/gp_agent_tool/config.py RENAMED
File without changes
{gpbench-1.0.0 → gpbench-1.0.3}/gp_agent_tool/main.py RENAMED
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{gpbench-1.0.0 → gpbench-1.0.3}/gpbench/__init__.py RENAMED
File without changes
{gpbench-1.0.0 → gpbench-1.0.3}/gpbench/_selftest.py RENAMED
File without changes
{gpbench-1.0.0 → gpbench-1.0.3}/setup.cfg RENAMED
File without changes
{gpbench-1.0.0 → gpbench-1.0.3}/tests/test_import.py RENAMED
File without changes
{gpbench-1.0.0 → gpbench-1.0.3}/tests/test_method.py RENAMED
File without changes