PyPI - gp3mlpy - Versions diffs - 0.1.0__tar.gz - Mend

gp3mlpy 0.1.0__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

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gp3mlpy-0.1.0/.github/workflows/ci.yml +109 -0
gp3mlpy-0.1.0/.github/workflows/pages.yml +51 -0
gp3mlpy-0.1.0/.github/workflows/parity.yml +469 -0
gp3mlpy-0.1.0/.github/workflows/publish.yml +141 -0
gp3mlpy-0.1.0/.gitignore +15 -0
gp3mlpy-0.1.0/.zenodo.json +22 -0
gp3mlpy-0.1.0/CHANGELOG.md +19 -0
gp3mlpy-0.1.0/CITATION.cff +12 -0
gp3mlpy-0.1.0/CODE_OF_CONDUCT.md +3 -0
gp3mlpy-0.1.0/CONTRIBUTING.md +7 -0
gp3mlpy-0.1.0/FILE_MANIFEST.csv +250 -0
gp3mlpy-0.1.0/FILE_MANIFEST.json +1254 -0
gp3mlpy-0.1.0/GOVERNANCE.md +7 -0
gp3mlpy-0.1.0/LICENSE +21 -0
gp3mlpy-0.1.0/MANUAL_UPLOAD.md +30 -0
gp3mlpy-0.1.0/PARITY_STATUS.md +34 -0
gp3mlpy-0.1.0/PKG-INFO +258 -0
gp3mlpy-0.1.0/PROHIBITED-USE.md +16 -0
gp3mlpy-0.1.0/README.md +199 -0
gp3mlpy-0.1.0/REFERENCE_BASELINE.md +5 -0
gp3mlpy-0.1.0/RELEASE_CHECKLIST.md +115 -0
gp3mlpy-0.1.0/SECURITY.md +3 -0
gp3mlpy-0.1.0/UPLOAD_CHECKLIST.md +23 -0
gp3mlpy-0.1.0/VALIDATION_REPORT.md +87 -0
gp3mlpy-0.1.0/docs/api-map.md +143 -0
gp3mlpy-0.1.0/docs/articles/analysis-plan-governance.md +12 -0
gp3mlpy-0.1.0/docs/articles/api-stability-contracts.md +25 -0
gp3mlpy-0.1.0/docs/articles/assigned-condition-discrimination.md +15 -0
gp3mlpy-0.1.0/docs/articles/contaminated-manifest-leakage.md +13 -0
gp3mlpy-0.1.0/docs/articles/cross-package-interoperability.md +22 -0
gp3mlpy-0.1.0/docs/articles/dataset-shift-and-robustness.md +71 -0
gp3mlpy-0.1.0/docs/articles/decision-governance.md +73 -0
gp3mlpy-0.1.0/docs/articles/external-validation-reporting.md +17 -0
gp3mlpy-0.1.0/docs/articles/governance-standards-profile.md +71 -0
gp3mlpy-0.1.0/docs/articles/group-aware-conformal-prediction.md +15 -0
gp3mlpy-0.1.0/docs/articles/index.md +86 -0
gp3mlpy-0.1.0/docs/articles/integrated-research-workflow.md +32 -0
gp3mlpy-0.1.0/docs/articles/nested-grouped-resampling.md +15 -0
gp3mlpy-0.1.0/docs/articles/observed-behavioral-endpoint.md +13 -0
gp3mlpy-0.1.0/docs/articles/optional-engine-portability.md +63 -0
gp3mlpy-0.1.0/docs/articles/participant-generalization.md +13 -0
gp3mlpy-0.1.0/docs/articles/participant-stimulus-generalization.md +13 -0
gp3mlpy-0.1.0/docs/articles/portable-research-artifacts.md +16 -0
gp3mlpy-0.1.0/docs/articles/recording-quality-review.md +21 -0
gp3mlpy-0.1.0/docs/articles/reproducibility-hardening.md +18 -0
gp3mlpy-0.1.0/docs/articles/stimulus-generalization.md +13 -0
gp3mlpy-0.1.0/docs/assets/brand/gp3mlpy-mark.svg +26 -0
gp3mlpy-0.1.0/docs/assets/plots/dataset-shift.svg +1301 -0
gp3mlpy-0.1.0/docs/assets/plots/engine-capabilities.svg +1097 -0
gp3mlpy-0.1.0/docs/assets/plots/governance-profile.svg +1167 -0
gp3mlpy-0.1.0/docs/assets/plots/threshold-evaluation.svg +1315 -0
gp3mlpy-0.1.0/docs/index.md +226 -0
gp3mlpy-0.1.0/docs/key-concepts.md +93 -0
gp3mlpy-0.1.0/docs/plots.md +100 -0
gp3mlpy-0.1.0/docs/reference/apply_gazepoint_calibrator.md +15 -0
gp3mlpy-0.1.0/docs/reference/apply_gazepoint_decision_rule.md +21 -0
gp3mlpy-0.1.0/docs/reference/as_gp3ml_data.md +15 -0
gp3mlpy-0.1.0/docs/reference/assert_gp3ml_engine_available.md +15 -0
gp3mlpy-0.1.0/docs/reference/assert_gp3ml_use_case.md +15 -0
gp3mlpy-0.1.0/docs/reference/assess_gazepoint_calibration.md +23 -0
gp3mlpy-0.1.0/docs/reference/assess_gazepoint_conformal_coverage.md +21 -0
gp3mlpy-0.1.0/docs/reference/audit_gazepoint_abstention.md +15 -0
gp3mlpy-0.1.0/docs/reference/audit_gazepoint_dataset_shift.md +21 -0
gp3mlpy-0.1.0/docs/reference/audit_gazepoint_group_folds.md +15 -0
gp3mlpy-0.1.0/docs/reference/audit_gazepoint_missingness_shift.md +21 -0
gp3mlpy-0.1.0/docs/reference/audit_gazepoint_ml_leakage.md +27 -0
gp3mlpy-0.1.0/docs/reference/audit_gazepoint_model_robustness.md +22 -0
gp3mlpy-0.1.0/docs/reference/audit_gazepoint_nested_resampling.md +17 -0
gp3mlpy-0.1.0/docs/reference/audit_gazepoint_plan_deviations.md +21 -0
gp3mlpy-0.1.0/docs/reference/audit_gazepoint_reproducibility.md +19 -0
gp3mlpy-0.1.0/docs/reference/audit_gp3ml_api_stability.md +15 -0
gp3mlpy-0.1.0/docs/reference/audit_gp3ml_governance_profile.md +15 -0
gp3mlpy-0.1.0/docs/reference/bake_gazepoint_preprocessor.md +15 -0
gp3mlpy-0.1.0/docs/reference/bootstrap_gazepoint_metrics.md +24 -0
gp3mlpy-0.1.0/docs/reference/bootstrap_gazepoint_metrics_by_unit.md +30 -0
gp3mlpy-0.1.0/docs/reference/capture_gazepoint_environment.md +19 -0
gp3mlpy-0.1.0/docs/reference/collect_gazepoint_fold_predictions.md +15 -0
gp3mlpy-0.1.0/docs/reference/combine_gazepoint_handoffs.md +19 -0
gp3mlpy-0.1.0/docs/reference/compare_gazepoint_environments.md +15 -0
gp3mlpy-0.1.0/docs/reference/compare_gazepoint_models.md +15 -0
gp3mlpy-0.1.0/docs/reference/create_external_validation_report.md +19 -0
gp3mlpy-0.1.0/docs/reference/create_gazepoint_decision_rule.md +28 -0
gp3mlpy-0.1.0/docs/reference/create_gazepoint_feature_manifest.md +28 -0
gp3mlpy-0.1.0/docs/reference/create_gazepoint_group_folds.md +28 -0
gp3mlpy-0.1.0/docs/reference/create_gazepoint_handoff.md +25 -0
gp3mlpy-0.1.0/docs/reference/create_gazepoint_model_artifact.md +24 -0
gp3mlpy-0.1.0/docs/reference/create_gazepoint_model_card.md +24 -0
gp3mlpy-0.1.0/docs/reference/create_gazepoint_nested_folds.md +23 -0
gp3mlpy-0.1.0/docs/reference/create_gazepoint_release_evidence.md +22 -0
gp3mlpy-0.1.0/docs/reference/create_gazepoint_release_model_card.md +29 -0
gp3mlpy-0.1.0/docs/reference/create_gazepoint_reproducibility_report.md +21 -0
gp3mlpy-0.1.0/docs/reference/create_gazepoint_synthetic_manifest.md +21 -0
gp3mlpy-0.1.0/docs/reference/create_gazepoint_synthetic_task.md +21 -0
gp3mlpy-0.1.0/docs/reference/create_gazepoint_tuning_grid.md +25 -0
gp3mlpy-0.1.0/docs/reference/create_gp3ml_governance_profile.md +19 -0
gp3mlpy-0.1.0/docs/reference/declare_gazepoint_analysis_plan.md +35 -0
gp3mlpy-0.1.0/docs/reference/declare_gazepoint_external_dataset.md +26 -0
gp3mlpy-0.1.0/docs/reference/declare_gazepoint_task.md +28 -0
gp3mlpy-0.1.0/docs/reference/diagnose_gazepoint_group_folds.md +15 -0
gp3mlpy-0.1.0/docs/reference/evaluate_external_validation.md +22 -0
gp3mlpy-0.1.0/docs/reference/evaluate_gazepoint_external_transportability.md +26 -0
gp3mlpy-0.1.0/docs/reference/evaluate_gazepoint_feature_stability.md +15 -0
gp3mlpy-0.1.0/docs/reference/evaluate_gazepoint_group_folds.md +31 -0
gp3mlpy-0.1.0/docs/reference/evaluate_gazepoint_missingness_sensitivity.md +15 -0
gp3mlpy-0.1.0/docs/reference/evaluate_gazepoint_nested_resampling.md +30 -0
gp3mlpy-0.1.0/docs/reference/evaluate_gazepoint_seed_stability.md +15 -0
gp3mlpy-0.1.0/docs/reference/evaluate_gazepoint_threshold_stability.md +20 -0
gp3mlpy-0.1.0/docs/reference/evaluate_gazepoint_thresholds.md +22 -0
gp3mlpy-0.1.0/docs/reference/fit_gazepoint_calibrator.md +20 -0
gp3mlpy-0.1.0/docs/reference/fit_gazepoint_conformal.md +25 -0
gp3mlpy-0.1.0/docs/reference/fit_gazepoint_deep_model.md +28 -0
gp3mlpy-0.1.0/docs/reference/fit_gazepoint_model.md +25 -0
gp3mlpy-0.1.0/docs/reference/fit_gazepoint_preprocessor.md +23 -0
gp3mlpy-0.1.0/docs/reference/gazepoint_classification_metrics.md +21 -0
gp3mlpy-0.1.0/docs/reference/gazepoint_performance_metrics.md +21 -0
gp3mlpy-0.1.0/docs/reference/gazepoint_regression_metrics.md +15 -0
gp3mlpy-0.1.0/docs/reference/gp3ml_api_contracts.md +15 -0
gp3mlpy-0.1.0/docs/reference/gp3ml_available_engines.md +15 -0
gp3mlpy-0.1.0/docs/reference/gp3ml_engine_capabilities.md +15 -0
gp3mlpy-0.1.0/docs/reference/gp3ml_interop_contracts.md +15 -0
gp3mlpy-0.1.0/docs/reference/gp3ml_object_schema.md +15 -0
gp3mlpy-0.1.0/docs/reference/gp3ml_prohibited_uses.md +15 -0
gp3mlpy-0.1.0/docs/reference/index.md +129 -0
gp3mlpy-0.1.0/docs/reference/integrate_black_box_model.md +23 -0
gp3mlpy-0.1.0/docs/reference/lock_gazepoint_analysis_plan.md +15 -0
gp3mlpy-0.1.0/docs/reference/normalize_gazepoint_artifact_text.md +15 -0
gp3mlpy-0.1.0/docs/reference/predict_gazepoint_interval.md +15 -0
gp3mlpy-0.1.0/docs/reference/predict_gazepoint_set.md +15 -0
gp3mlpy-0.1.0/docs/reference/restore_gazepoint_model_artifact.md +15 -0
gp3mlpy-0.1.0/docs/reference/select_gazepoint_model.md +24 -0
gp3mlpy-0.1.0/docs/reference/select_gazepoint_threshold.md +25 -0
gp3mlpy-0.1.0/docs/reference/simulate_gazepoint_governed_data.md +20 -0
gp3mlpy-0.1.0/docs/reference/simulate_gazepoint_research_handoffs.md +20 -0
gp3mlpy-0.1.0/docs/reference/split_gazepoint_ml_data.md +27 -0
gp3mlpy-0.1.0/docs/reference/summarize_gazepoint_resample_performance.md +21 -0
gp3mlpy-0.1.0/docs/reference/summarize_gazepoint_resample_uncertainty.md +21 -0
gp3mlpy-0.1.0/docs/reference/summarize_gazepoint_shift.md +15 -0
gp3mlpy-0.1.0/docs/reference/test_gazepoint_model_portability.md +20 -0
gp3mlpy-0.1.0/docs/reference/train_gazepoint_classifier.md +15 -0
gp3mlpy-0.1.0/docs/reference/tune_gazepoint_model.md +26 -0
gp3mlpy-0.1.0/docs/reference/validate_gazepoint_analysis_plan.md +15 -0
gp3mlpy-0.1.0/docs/reference/validate_gazepoint_conformal.md +15 -0
gp3mlpy-0.1.0/docs/reference/validate_gazepoint_decision_rule.md +15 -0
gp3mlpy-0.1.0/docs/reference/validate_gazepoint_environment.md +15 -0
gp3mlpy-0.1.0/docs/reference/validate_gazepoint_feature_manifest.md +15 -0
gp3mlpy-0.1.0/docs/reference/validate_gazepoint_fold_diagnostics.md +15 -0
gp3mlpy-0.1.0/docs/reference/validate_gazepoint_group_folds.md +15 -0
gp3mlpy-0.1.0/docs/reference/validate_gazepoint_handoff.md +15 -0
gp3mlpy-0.1.0/docs/reference/validate_gazepoint_ml_roles.md +15 -0
gp3mlpy-0.1.0/docs/reference/validate_gazepoint_ml_split.md +15 -0
gp3mlpy-0.1.0/docs/reference/validate_gazepoint_model_artifact.md +15 -0
gp3mlpy-0.1.0/docs/reference/validate_gazepoint_model_tuning.md +17 -0
gp3mlpy-0.1.0/docs/reference/validate_gazepoint_nested_evaluation.md +17 -0
gp3mlpy-0.1.0/docs/reference/validate_gazepoint_nested_folds.md +17 -0
gp3mlpy-0.1.0/docs/reference/validate_gazepoint_release_checksums.md +15 -0
gp3mlpy-0.1.0/docs/reference/validate_gazepoint_resample_evaluation.md +17 -0
gp3mlpy-0.1.0/docs/reference/validate_gazepoint_research_bundle.md +15 -0
gp3mlpy-0.1.0/docs/reference/validate_gazepoint_ro_crate.md +15 -0
gp3mlpy-0.1.0/docs/reference/validate_gazepoint_target_uncertainty.md +17 -0
gp3mlpy-0.1.0/docs/reference/validate_gazepoint_transportability.md +17 -0
gp3mlpy-0.1.0/docs/reference/validate_gp3ml_object_contract.md +15 -0
gp3mlpy-0.1.0/docs/reference/with_gazepoint_reproducible_output.md +15 -0
gp3mlpy-0.1.0/docs/reference/write_external_validation_report.md +15 -0
gp3mlpy-0.1.0/docs/reference/write_gazepoint_analysis_plan.md +15 -0
gp3mlpy-0.1.0/docs/reference/write_gazepoint_feature_manifest_csv.md +21 -0
gp3mlpy-0.1.0/docs/reference/write_gazepoint_fold_diagnostics_csv.md +23 -0
gp3mlpy-0.1.0/docs/reference/write_gazepoint_group_folds_csv.md +25 -0
gp3mlpy-0.1.0/docs/reference/write_gazepoint_ml_leakage_audit_csv.md +21 -0
gp3mlpy-0.1.0/docs/reference/write_gazepoint_ml_split_csv.md +23 -0
gp3mlpy-0.1.0/docs/reference/write_gazepoint_model_card.md +20 -0
gp3mlpy-0.1.0/docs/reference/write_gazepoint_model_tuning.md +21 -0
gp3mlpy-0.1.0/docs/reference/write_gazepoint_nested_evaluation.md +20 -0
gp3mlpy-0.1.0/docs/reference/write_gazepoint_release_checksums.md +15 -0
gp3mlpy-0.1.0/docs/reference/write_gazepoint_release_model_card.md +20 -0
gp3mlpy-0.1.0/docs/reference/write_gazepoint_reproducibility_audit.md +20 -0
gp3mlpy-0.1.0/docs/reference/write_gazepoint_reproducibility_report.md +15 -0
gp3mlpy-0.1.0/docs/reference/write_gazepoint_resample_evaluation.md +20 -0
gp3mlpy-0.1.0/docs/reference/write_gazepoint_ro_crate.md +25 -0
gp3mlpy-0.1.0/docs/reference/write_gazepoint_target_uncertainty.md +20 -0
gp3mlpy-0.1.0/docs/reference/write_gazepoint_transportability_report.md +15 -0
gp3mlpy-0.1.0/docs/reference/write_gp3ml_api_contracts.md +20 -0
gp3mlpy-0.1.0/docs/reference/write_gp3ml_governance_profile.md +15 -0
gp3mlpy-0.1.0/docs/stylesheets/extra.css +211 -0
gp3mlpy-0.1.0/examples/analysis-plan-governance.py +6 -0
gp3mlpy-0.1.0/examples/api-stability-contracts.py +6 -0
gp3mlpy-0.1.0/examples/assigned-condition-discrimination.py +10 -0
gp3mlpy-0.1.0/examples/contaminated-manifest-leakage.py +6 -0
gp3mlpy-0.1.0/examples/cross-package-interoperability.py +6 -0
gp3mlpy-0.1.0/examples/dataset-shift-and-robustness.py +6 -0
gp3mlpy-0.1.0/examples/decision-governance.py +6 -0
gp3mlpy-0.1.0/examples/external-validation-reporting.py +6 -0
gp3mlpy-0.1.0/examples/governance-standards-profile.py +6 -0
gp3mlpy-0.1.0/examples/group-aware-conformal-prediction.py +6 -0
gp3mlpy-0.1.0/examples/integrated-research-workflow.py +10 -0
gp3mlpy-0.1.0/examples/nested-grouped-resampling.py +6 -0
gp3mlpy-0.1.0/examples/observed-behavioral-endpoint.py +6 -0
gp3mlpy-0.1.0/examples/optional-engine-portability.py +6 -0
gp3mlpy-0.1.0/examples/participant-generalization.py +10 -0
gp3mlpy-0.1.0/examples/participant-stimulus-generalization.py +10 -0
gp3mlpy-0.1.0/examples/portable-research-artifacts.py +6 -0
gp3mlpy-0.1.0/examples/recording-quality-review.py +10 -0
gp3mlpy-0.1.0/examples/reproducibility-hardening.py +6 -0
gp3mlpy-0.1.0/examples/stimulus-generalization.py +10 -0
gp3mlpy-0.1.0/mkdocs.yml +101 -0
gp3mlpy-0.1.0/parity/README.md +79 -0
gp3mlpy-0.1.0/parity/build_matrix.py +118 -0
gp3mlpy-0.1.0/parity/calibration_cases.csv +18 -0
gp3mlpy-0.1.0/parity/compare_calibration.py +202 -0
gp3mlpy-0.1.0/parity/compare_core.py +153 -0
gp3mlpy-0.1.0/parity/compare_diagnostics.py +138 -0
gp3mlpy-0.1.0/parity/compare_external_validation.py +233 -0
gp3mlpy-0.1.0/parity/compare_final_reporting.py +273 -0
gp3mlpy-0.1.0/parity/compare_governance.py +140 -0
gp3mlpy-0.1.0/parity/compare_leakage.py +94 -0
gp3mlpy-0.1.0/parity/compare_metrics_engines.py +394 -0
gp3mlpy-0.1.0/parity/compare_model_execution.py +214 -0
gp3mlpy-0.1.0/parity/compare_nested_resampling.py +242 -0
gp3mlpy-0.1.0/parity/compare_preprocessing.py +156 -0
gp3mlpy-0.1.0/parity/compare_resample_outputs.py +155 -0
gp3mlpy-0.1.0/parity/compare_resampling.py +201 -0
gp3mlpy-0.1.0/parity/compare_splitting.py +113 -0
gp3mlpy-0.1.0/parity/compare_synthetic.py +246 -0
gp3mlpy-0.1.0/parity/compare_target_uncertainty.py +331 -0
gp3mlpy-0.1.0/parity/compare_tuning_objects.py +164 -0
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gp3mlpy-0.1.0/parity/diagnostics_cases.csv +25 -0
gp3mlpy-0.1.0/parity/external_validation_cases.csv +26 -0
gp3mlpy-0.1.0/parity/final_reporting_cases.csv +34 -0
gp3mlpy-0.1.0/parity/fixtures/calibration.json +35 -0
gp3mlpy-0.1.0/parity/fixtures/core_metrics.json +51 -0
gp3mlpy-0.1.0/parity/fixtures/diagnostics.json +37 -0
gp3mlpy-0.1.0/parity/fixtures/external_validation.json +13 -0
gp3mlpy-0.1.0/parity/fixtures/final_reporting.json +9 -0
gp3mlpy-0.1.0/parity/fixtures/governance.json +254 -0
gp3mlpy-0.1.0/parity/fixtures/leakage.json +31 -0
gp3mlpy-0.1.0/parity/fixtures/metrics_engines.json +102 -0
gp3mlpy-0.1.0/parity/fixtures/model_execution.json +12 -0
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gp3mlpy-0.1.0/parity/fixtures/target_uncertainty.json +45 -0
gp3mlpy-0.1.0/parity/fixtures/tuning_objects.json +17 -0
gp3mlpy-0.1.0/parity/governance_cases.csv +29 -0
gp3mlpy-0.1.0/parity/leakage_cases.csv +17 -0
gp3mlpy-0.1.0/parity/metrics_engines_cases.csv +12 -0
gp3mlpy-0.1.0/parity/model_execution_cases.csv +25 -0
gp3mlpy-0.1.0/parity/nested_resampling_cases.csv +24 -0
gp3mlpy-0.1.0/parity/preprocessing_cases.csv +17 -0
gp3mlpy-0.1.0/parity/resample_outputs_cases.csv +25 -0
gp3mlpy-0.1.0/parity/resampling_cases.csv +23 -0
gp3mlpy-0.1.0/parity/run_python_calibration.py +290 -0
gp3mlpy-0.1.0/parity/run_python_core.py +84 -0
gp3mlpy-0.1.0/parity/run_python_diagnostics.py +374 -0
gp3mlpy-0.1.0/parity/run_python_external_validation.py +322 -0
gp3mlpy-0.1.0/parity/run_python_final_reporting.py +378 -0
gp3mlpy-0.1.0/parity/run_python_governance.py +239 -0
gp3mlpy-0.1.0/parity/run_python_leakage.py +185 -0
gp3mlpy-0.1.0/parity/run_python_metrics_engines.py +341 -0
gp3mlpy-0.1.0/parity/run_python_model_execution.py +404 -0
gp3mlpy-0.1.0/parity/run_python_nested_resampling.py +414 -0
gp3mlpy-0.1.0/parity/run_python_preprocessing.py +290 -0
gp3mlpy-0.1.0/parity/run_python_resample_outputs.py +375 -0
gp3mlpy-0.1.0/parity/run_python_resampling.py +406 -0
gp3mlpy-0.1.0/parity/run_python_splitting.py +300 -0
gp3mlpy-0.1.0/parity/run_python_synthetic.py +300 -0
gp3mlpy-0.1.0/parity/run_python_target_uncertainty.py +451 -0
gp3mlpy-0.1.0/parity/run_python_tuning_objects.py +224 -0
gp3mlpy-0.1.0/parity/run_r_calibration.R +315 -0
gp3mlpy-0.1.0/parity/run_r_core.R +93 -0
gp3mlpy-0.1.0/parity/run_r_diagnostics.R +338 -0
gp3mlpy-0.1.0/parity/run_r_external_validation.R +449 -0
gp3mlpy-0.1.0/parity/run_r_final_reporting.R +366 -0
gp3mlpy-0.1.0/parity/run_r_governance.R +274 -0
gp3mlpy-0.1.0/parity/run_r_leakage.R +163 -0
gp3mlpy-0.1.0/parity/run_r_metrics_engines.R +300 -0
gp3mlpy-0.1.0/parity/run_r_model_execution.R +422 -0
gp3mlpy-0.1.0/parity/run_r_nested_resampling.R +373 -0
gp3mlpy-0.1.0/parity/run_r_preprocessing.R +299 -0
gp3mlpy-0.1.0/parity/run_r_resample_outputs.R +25 -0
gp3mlpy-0.1.0/parity/run_r_resample_outputs_helpers.R +310 -0
gp3mlpy-0.1.0/parity/run_r_resample_outputs_impl.R +145 -0
gp3mlpy-0.1.0/parity/run_r_resampling.R +437 -0
gp3mlpy-0.1.0/parity/run_r_splitting.R +290 -0
gp3mlpy-0.1.0/parity/run_r_synthetic.R +288 -0
gp3mlpy-0.1.0/parity/run_r_target_uncertainty.R +106 -0
gp3mlpy-0.1.0/parity/run_r_target_uncertainty_impl.R +460 -0
gp3mlpy-0.1.0/parity/run_r_tuning_objects.R +28 -0
gp3mlpy-0.1.0/parity/run_r_tuning_objects_helpers.R +175 -0
gp3mlpy-0.1.0/parity/run_r_tuning_objects_impl.R +132 -0
gp3mlpy-0.1.0/parity/splitting_cases.csv +24 -0
gp3mlpy-0.1.0/parity/synthetic_cases.csv +14 -0
gp3mlpy-0.1.0/parity/target_uncertainty_cases.csv +29 -0
gp3mlpy-0.1.0/parity/tuning_objects_cases.csv +27 -0
gp3mlpy-0.1.0/pyproject.toml +88 -0
gp3mlpy-0.1.0/reference/r_api_inventory.csv +128 -0
gp3mlpy-0.1.0/reference/r_articles.json +22 -0
gp3mlpy-0.1.0/reference/r_example_inventory.json +51 -0
gp3mlpy-0.1.0/reference/r_failure_contracts.json +266 -0
gp3mlpy-0.1.0/reference/r_plot_methods.json +18 -0
gp3mlpy-0.1.0/reference/r_print_methods.json +51 -0
gp3mlpy-0.1.0/reference/r_public_classes.json +40 -0
gp3mlpy-0.1.0/reference/r_tests_inventory.json +34 -0
gp3mlpy-0.1.0/reference/reference_summary.json +15 -0
gp3mlpy-0.1.0/scripts/build_doc_assets.py +128 -0
gp3mlpy-0.1.0/scripts/check_installed_wheel.py +18 -0
gp3mlpy-0.1.0/scripts/generate_reference_layer.py +137 -0
gp3mlpy-0.1.0/scripts/run_quality_gates.ps1 +34 -0
gp3mlpy-0.1.0/scripts/run_quality_gates.sh +13 -0
gp3mlpy-0.1.0/scripts/validate_release.py +135 -0
gp3mlpy-0.1.0/src/gp3mlpy/__init__.py +101 -0
gp3mlpy-0.1.0/src/gp3mlpy/__init__.pyi +207 -0
gp3mlpy-0.1.0/src/gp3mlpy/_reference_docs.py +3 -0
gp3mlpy-0.1.0/src/gp3mlpy/_reprs.py +361 -0
gp3mlpy-0.1.0/src/gp3mlpy/_utils.py +133 -0
gp3mlpy-0.1.0/src/gp3mlpy/analysis_plan.py +129 -0
gp3mlpy-0.1.0/src/gp3mlpy/api_contracts.py +223 -0
gp3mlpy-0.1.0/src/gp3mlpy/calibration.py +159 -0
gp3mlpy-0.1.0/src/gp3mlpy/conformal.py +153 -0
gp3mlpy-0.1.0/src/gp3mlpy/dataset_shift.py +108 -0
gp3mlpy-0.1.0/src/gp3mlpy/decision_governance.py +238 -0
gp3mlpy-0.1.0/src/gp3mlpy/deep_learning.py +78 -0
gp3mlpy-0.1.0/src/gp3mlpy/engine_capabilities.py +87 -0
gp3mlpy-0.1.0/src/gp3mlpy/environment.py +69 -0
gp3mlpy-0.1.0/src/gp3mlpy/exceptions.py +7 -0
gp3mlpy-0.1.0/src/gp3mlpy/external_validation.py +467 -0
gp3mlpy-0.1.0/src/gp3mlpy/feature_provenance.py +153 -0
gp3mlpy-0.1.0/src/gp3mlpy/governance_profiles.py +42 -0
gp3mlpy-0.1.0/src/gp3mlpy/governance_reports.py +153 -0
gp3mlpy-0.1.0/src/gp3mlpy/interoperability.py +93 -0
gp3mlpy-0.1.0/src/gp3mlpy/leakage.py +179 -0
gp3mlpy-0.1.0/src/gp3mlpy/metrics.py +252 -0
gp3mlpy-0.1.0/src/gp3mlpy/model_artifacts.py +186 -0
gp3mlpy-0.1.0/src/gp3mlpy/model_engines.py +350 -0
gp3mlpy-0.1.0/src/gp3mlpy/model_tuning.py +417 -0
gp3mlpy-0.1.0/src/gp3mlpy/nested_resampling.py +311 -0
gp3mlpy-0.1.0/src/gp3mlpy/objects.py +218 -0
gp3mlpy-0.1.0/src/gp3mlpy/plotting.py +128 -0
gp3mlpy-0.1.0/src/gp3mlpy/preprocessing.py +154 -0
gp3mlpy-0.1.0/src/gp3mlpy/py.typed +0 -0
gp3mlpy-0.1.0/src/gp3mlpy/release_provenance.py +29 -0
gp3mlpy-0.1.0/src/gp3mlpy/reproducibility.py +69 -0
gp3mlpy-0.1.0/src/gp3mlpy/resample_evaluation.py +181 -0
gp3mlpy-0.1.0/src/gp3mlpy/resampling.py +193 -0
gp3mlpy-0.1.0/src/gp3mlpy/resampling_diagnostics.py +268 -0
gp3mlpy-0.1.0/src/gp3mlpy/research_workflow.py +50 -0
gp3mlpy-0.1.0/src/gp3mlpy/ro_crate.py +65 -0
gp3mlpy-0.1.0/src/gp3mlpy/roadmap_reporting.py +271 -0
gp3mlpy-0.1.0/src/gp3mlpy/robustness.py +70 -0
gp3mlpy-0.1.0/src/gp3mlpy/splitting.py +209 -0
gp3mlpy-0.1.0/src/gp3mlpy/synthetic.py +94 -0
gp3mlpy-0.1.0/src/gp3mlpy/target_uncertainty.py +129 -0
gp3mlpy-0.1.0/src/gp3mlpy/task_governance.py +201 -0
gp3mlpy-0.1.0/tests/test_core_contracts.py +221 -0
gp3mlpy-0.1.0/tests/test_coverage_decision_conformal_shift.py +405 -0
gp3mlpy-0.1.0/tests/test_coverage_engines_tuning.py +664 -0
gp3mlpy-0.1.0/tests/test_coverage_exact_cleanup.py +970 -0
gp3mlpy-0.1.0/tests/test_coverage_external_validation.py +433 -0
gp3mlpy-0.1.0/tests/test_coverage_final_arcs.py +37 -0
gp3mlpy-0.1.0/tests/test_coverage_final_residuals.py +527 -0
gp3mlpy-0.1.0/tests/test_coverage_governance_contracts_tail.py +578 -0
gp3mlpy-0.1.0/tests/test_coverage_leakage_plotting_tail.py +516 -0
gp3mlpy-0.1.0/tests/test_coverage_metrics_governance.py +535 -0
gp3mlpy-0.1.0/tests/test_coverage_reporting_artifacts.py +528 -0
gp3mlpy-0.1.0/tests/test_coverage_splitting_resampling.py +485 -0
gp3mlpy-0.1.0/tests/test_coverage_utils_objects.py +303 -0
gp3mlpy-0.1.0/tests/test_coverage_zero_residuals.py +276 -0
gp3mlpy-0.1.0/tests/test_examples.py +13 -0
gp3mlpy-0.1.0/tests/test_failure_contracts.py +116 -0
gp3mlpy-0.1.0/tests/test_r_parity_governance_order.py +41 -0
gp3mlpy-0.1.0/tests/test_r_parity_preprocessing_logical.py +55 -0
gp3mlpy-0.1.0/tests/test_r_parity_tuning_formatting.py +21 -0
gp3mlpy-0.1.0/tests/test_reference_inventory.py +74 -0
gp3mlpy-0.1.0/uv.lock +3302 -0

gp3mlpy-0.1.0/.github/workflows/ci.yml ADDED Viewed

@@ -0,0 +1,109 @@
+name: CI
+on:
+  push:
+    branches: [main, source-tree]
+  pull_request:
+    branches: [main]
+permissions:
+  contents: read
+jobs:
+  core:
+    name: core-${{ matrix.os }}-py${{ matrix.python }}
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [ubuntu-latest, windows-latest, macos-latest]
+        python: ['3.11', '3.12', '3.13']
+    runs-on: ${{ matrix.os }}
+    steps:
+      - uses: actions/checkout@v7
+      - uses: actions/setup-python@v7
+        with:
+          python-version: ${{ matrix.python }}
+      - name: Install core and test dependencies
+        run: python -m pip install -e ".[dev]"
+      - name: Run test suite
+        env:
+          MPLBACKEND: Agg
+        run: python -m pytest -q
+  coverage:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v7
+      - uses: actions/setup-python@v7
+        with:
+          python-version: '3.11'
+      - name: Install coverage dependencies
+        run: python -m pip install -e ".[dev]"
+      - name: Enforce 100% line and branch coverage
+        env:
+          MPLBACKEND: Agg
+        run: >-
+          python -m pytest
+          --cov=gp3mlpy
+          --cov-branch
+          --cov-report=term-missing
+          --cov-fail-under=100
+          -q
+  quality:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v7
+      - uses: actions/setup-python@v7
+        with:
+          python-version: '3.13'
+      - run: python -m pip install -e ".[dev]"
+      - name: Compile source
+        run: python -m compileall -q src/gp3mlpy tests scripts/build_doc_assets.py
+      - name: Ruff semantic lint
+        run: ruff check src tests examples scripts/build_doc_assets.py
+      - name: Public typing contract
+        run: mypy --follow-imports=skip src/gp3mlpy/__init__.pyi
+  docs:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v7
+      - uses: actions/setup-python@v7
+        with:
+          python-version: '3.13'
+      - run: python -m pip install -e ".[docs]"
+      - name: Generate documentation plot assets
+        env:
+          MPLBACKEND: Agg
+        run: python scripts/build_doc_assets.py
+      - name: Build strict documentation
+        run: mkdocs build --strict
+  package:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v7
+      - uses: actions/setup-python@v7
+        with:
+          python-version: '3.13'
+      - run: python -m pip install build twine
+      - run: python -m build
+      - run: python -m twine check dist/*
+      - name: Install built wheel and verify frozen API
+        shell: bash
+        run: |
+          set -euo pipefail
+          wheel=$(find dist -maxdepth 1 -name '*.whl' -print -quit)
+          python -m venv /tmp/gp3mlpy-wheel
+          /tmp/gp3mlpy-wheel/bin/python -m pip install "$wheel"
+          cd /tmp
+          /tmp/gp3mlpy-wheel/bin/python - <<'PY'
+          import gp3mlpy
+          exports = gp3mlpy.gp3ml_api_contracts().exports
+          assert len(exports) == 127
+          assert int((exports['stability'] == 'stable').sum()) == 71
+          assert int((exports['stability'] == 'experimental').sum()) == 56
+          assert gp3mlpy.r_reference_version == '0.3.0'
+          print('installed-wheel API smoke: PASS')
+          PY

gp3mlpy-0.1.0/.github/workflows/pages.yml ADDED Viewed

@@ -0,0 +1,51 @@
+name: Deploy documentation
+on:
+  push:
+    branches: [main]
+  workflow_dispatch:
+permissions:
+  contents: read
+  pages: write
+  id-token: write
+concurrency:
+  group: pages
+  cancel-in-progress: true
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v7
+      - name: Set up Python
+        uses: actions/setup-python@v7
+        with:
+          python-version: '3.13'
+      - name: Install package and documentation dependencies
+        run: python -m pip install -e ".[docs]"
+      - name: Generate documentation plot assets
+        env:
+          MPLBACKEND: Agg
+        run: python scripts/build_doc_assets.py
+      - name: Build MkDocs site
+        run: mkdocs build --strict
+      - name: Configure GitHub Pages
+        uses: actions/configure-pages@v5
+      - name: Upload GitHub Pages artifact
+        uses: actions/upload-pages-artifact@v4
+        with:
+          path: site
+  deploy:
+    needs: build
+    runs-on: ubuntu-latest
+    environment:
+      name: github-pages
+      url: ${{ steps.deployment.outputs.page_url }}
+    steps:
+      - name: Deploy GitHub Pages
+        id: deployment
+        uses: actions/deploy-pages@v4

gp3mlpy-0.1.0/.github/workflows/parity.yml ADDED Viewed

@@ -0,0 +1,469 @@
+name: R/Python behavioral parity
+on:
+  push:
+    branches:
+      - parity/r-0.3.0-behavioral-freeze
+    paths:
+      - 'parity/**'
+      - 'reference/r_api_inventory.csv'
+      - 'src/gp3mlpy/**'
+      - 'tests/test_r_parity_*.py'
+      - 'pyproject.toml'
+      - '.github/workflows/parity.yml'
+  pull_request:
+    paths:
+      - 'parity/**'
+      - 'reference/r_api_inventory.csv'
+      - 'src/gp3mlpy/**'
+      - 'tests/test_r_parity_*.py'
+      - 'pyproject.toml'
+      - '.github/workflows/parity.yml'
+  workflow_dispatch:
+permissions:
+  contents: read
+jobs:
+  deterministic-core:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v7
+      - uses: actions/setup-python@v7
+        with:
+          python-version: '3.13'
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: 'release'
+          use-public-rspm: true
+      - name: Install gp3mlpy
+        run: python -m pip install -e .
+      - name: Install R parity helper
+        shell: bash
+        run: Rscript -e 'install.packages("jsonlite", repos="https://cloud.r-project.org")'
+      - name: Download frozen gp3ml 0.3.0 archive
+        shell: bash
+        run: |
+          curl --fail --location --retry 3 \
+            --output /tmp/gp3ml_0.3.0.tar.gz \
+            https://github.com/stefanosbalaskas/gp3ml/releases/download/v0.3.0/gp3ml_0.3.0.tar.gz
+          echo '04c5fdb017c63ecbf6f5e85c29fff6492880201a2f2aa5c3c1d3fe998e60bae6  /tmp/gp3ml_0.3.0.tar.gz' | sha256sum --check
+      - name: Install frozen gp3ml reference
+        shell: bash
+        run: R CMD INSTALL /tmp/gp3ml_0.3.0.tar.gz
+      - name: Execute Python deterministic core fixtures
+        run: >-
+          python parity/run_python_core.py
+          parity/fixtures/core_metrics.json
+          parity/results/python-core.json
+      - name: Execute R deterministic core fixtures
+        shell: bash
+        run: >-
+          Rscript parity/run_r_core.R
+          parity/fixtures/core_metrics.json
+          parity/results/r-core.json
+      - name: Compare deterministic core behavior
+        run: >-
+          python parity/compare_core.py
+          parity/fixtures/core_metrics.json
+          parity/results/r-core.json
+          parity/results/python-core.json
+          parity/results/core-report.json
+      - name: Execute Python governance fixtures
+        run: >-
+          python parity/run_python_governance.py
+          parity/fixtures/governance.json
+          parity/results/python-governance.json
+      - name: Execute R governance fixtures
+        shell: bash
+        run: >-
+          Rscript parity/run_r_governance.R
+          parity/fixtures/governance.json
+          parity/results/r-governance.json
+      - name: Compare governance behavior
+        run: >-
+          python parity/compare_governance.py
+          parity/fixtures/governance.json
+          parity/results/r-governance.json
+          parity/results/python-governance.json
+          parity/results/governance-report.json
+      - name: Execute Python leakage fixtures
+        run: >-
+          python parity/run_python_leakage.py
+          parity/fixtures/leakage.json
+          parity/results/python-leakage.json
+      - name: Execute R leakage fixtures
+        shell: bash
+        run: >-
+          Rscript parity/run_r_leakage.R
+          parity/fixtures/leakage.json
+          parity/results/r-leakage.json
+      - name: Compare leakage behavior
+        run: >-
+          python parity/compare_leakage.py
+          parity/fixtures/leakage.json
+          parity/results/r-leakage.json
+          parity/results/python-leakage.json
+          parity/results/leakage-report.json
+      - name: Execute Python splitting fixtures
+        run: >-
+          python parity/run_python_splitting.py
+          parity/fixtures/splitting.json
+          parity/results/python-splitting.json
+      - name: Execute R splitting fixtures
+        shell: bash
+        run: >-
+          Rscript parity/run_r_splitting.R
+          parity/fixtures/splitting.json
+          parity/results/r-splitting.json
+      - name: Compare splitting behavior
+        run: >-
+          python parity/compare_splitting.py
+          parity/fixtures/splitting.json
+          parity/results/r-splitting.json
+          parity/results/python-splitting.json
+          parity/results/splitting-report.json
+      - name: Execute Python group-resampling fixtures
+        run: >-
+          python parity/run_python_resampling.py
+          parity/fixtures/resampling.json
+          parity/results/python-resampling.json
+      - name: Execute R group-resampling fixtures
+        shell: bash
+        run: >-
+          Rscript parity/run_r_resampling.R
+          parity/fixtures/resampling.json
+          parity/results/r-resampling.json
+      - name: Compare group-resampling behavior
+        run: >-
+          python parity/compare_resampling.py
+          parity/fixtures/resampling.json
+          parity/results/r-resampling.json
+          parity/results/python-resampling.json
+          parity/results/resampling-report.json
+      - name: Execute Python fold-diagnostics fixtures
+        run: >-
+          python parity/run_python_diagnostics.py
+          parity/fixtures/diagnostics.json
+          parity/results/python-diagnostics.json
+      - name: Execute R fold-diagnostics fixtures
+        shell: bash
+        run: >-
+          Rscript parity/run_r_diagnostics.R
+          parity/fixtures/diagnostics.json
+          parity/results/r-diagnostics.json
+      - name: Compare fold-diagnostics behavior
+        run: >-
+          python parity/compare_diagnostics.py
+          parity/fixtures/diagnostics.json
+          parity/results/r-diagnostics.json
+          parity/results/python-diagnostics.json
+          parity/results/diagnostics-report.json
+      - name: Execute Python calibration fixtures
+        run: >-
+          python parity/run_python_calibration.py
+          parity/fixtures/calibration.json
+          parity/results/python-calibration.json
+      - name: Execute R calibration fixtures
+        shell: bash
+        run: >-
+          Rscript parity/run_r_calibration.R
+          parity/fixtures/calibration.json
+          parity/results/r-calibration.json
+      - name: Compare calibration behavior
+        run: >-
+          python parity/compare_calibration.py
+          parity/fixtures/calibration.json
+          parity/results/r-calibration.json
+          parity/results/python-calibration.json
+          parity/results/calibration-report.json
+      - name: Execute Python preprocessing fixtures
+        run: >-
+          python parity/run_python_preprocessing.py
+          parity/fixtures/preprocessing.json
+          parity/results/python-preprocessing.json
+      - name: Execute R preprocessing fixtures
+        shell: bash
+        run: >-
+          Rscript parity/run_r_preprocessing.R
+          parity/fixtures/preprocessing.json
+          parity/results/r-preprocessing.json
+      - name: Compare preprocessing behavior
+        run: >-
+          python parity/compare_preprocessing.py
+          parity/fixtures/preprocessing.json
+          parity/results/r-preprocessing.json
+          parity/results/python-preprocessing.json
+          parity/results/preprocessing-report.json
+      - name: Execute Python synthetic workflows fixtures
+        run: >-
+          python parity/run_python_synthetic.py
+          parity/fixtures/synthetic.json
+          parity/results/python-synthetic.json
+      - name: Execute R synthetic workflows fixtures
+        shell: bash
+        run: >-
+          Rscript parity/run_r_synthetic.R
+          parity/fixtures/synthetic.json
+          parity/results/r-synthetic.json
+      - name: Compare synthetic workflows behavior
+        run: >-
+          python parity/compare_synthetic.py
+          parity/fixtures/synthetic.json
+          parity/results/r-synthetic.json
+          parity/results/python-synthetic.json
+          parity/results/synthetic-report.json
+      - name: Execute Python target-uncertainty fixtures
+        run: >-
+          python parity/run_python_target_uncertainty.py
+          parity/fixtures/target_uncertainty.json
+          parity/results/python-target-uncertainty.json
+      - name: Execute R target-uncertainty fixtures
+        shell: bash
+        run: >-
+          Rscript parity/run_r_target_uncertainty.R
+          parity/fixtures/target_uncertainty.json
+          parity/results/r-target-uncertainty.json
+      - name: Compare target-uncertainty behavior
+        run: >-
+          python parity/compare_target_uncertainty.py
+          parity/fixtures/target_uncertainty.json
+          parity/results/r-target-uncertainty.json
+          parity/results/python-target-uncertainty.json
+          parity/results/target-uncertainty-report.json
+      - name: Execute Python metrics/engines fixtures
+        run: >-
+          python parity/run_python_metrics_engines.py
+          parity/fixtures/metrics_engines.json
+          parity/results/python-metrics-engines.json
+      - name: Execute R metrics/engines fixtures
+        shell: bash
+        run: >-
+          Rscript parity/run_r_metrics_engines.R
+          parity/fixtures/metrics_engines.json
+          parity/results/r-metrics-engines.json
+      - name: Compare metrics/engines behavior
+        run: >-
+          python parity/compare_metrics_engines.py
+          parity/fixtures/metrics_engines.json
+          parity/results/r-metrics-engines.json
+          parity/results/python-metrics-engines.json
+          parity/results/metrics-engines-report.json
+      - name: Execute Python resample-output fixtures
+        run: >-
+          python parity/run_python_resample_outputs.py
+          parity/fixtures/resample_outputs.json
+          parity/results/python-resample-outputs.json
+      - name: Execute R resample-output fixtures
+        shell: bash
+        run: >-
+          Rscript parity/run_r_resample_outputs.R
+          parity/fixtures/resample_outputs.json
+          parity/results/r-resample-outputs.json
+      - name: Compare resample-output behavior
+        run: >-
+          python parity/compare_resample_outputs.py
+          parity/fixtures/resample_outputs.json
+          parity/results/r-resample-outputs.json
+          parity/results/python-resample-outputs.json
+          parity/results/resample-outputs-report.json
+      - name: Execute Python tuning-object fixtures
+        run: >-
+          python parity/run_python_tuning_objects.py
+          parity/fixtures/tuning_objects.json
+          parity/results/python-tuning-objects.json
+      - name: Execute R tuning-object fixtures
+        shell: bash
+        run: >-
+          Rscript parity/run_r_tuning_objects.R
+          parity/fixtures/tuning_objects.json
+          parity/results/r-tuning-objects.json
+      - name: Compare tuning-object behavior
+        run: >-
+          python parity/compare_tuning_objects.py
+          parity/fixtures/tuning_objects.json
+          parity/tuning_objects_cases.csv
+          parity/results/r-tuning-objects.json
+          parity/results/python-tuning-objects.json
+          parity/results/tuning-objects-report.json
+      - name: Execute Python model-execution fixtures
+        run: >-
+          python parity/run_python_model_execution.py
+          parity/fixtures/model_execution.json
+          parity/results/python-model-execution.json
+      - name: Execute R model-execution fixtures
+        shell: bash
+        run: >-
+          Rscript parity/run_r_model_execution.R
+          parity/fixtures/model_execution.json
+          parity/results/r-model-execution.json
+      - name: Compare model-execution behavior
+        run: >-
+          python parity/compare_model_execution.py
+          parity/fixtures/model_execution.json
+          parity/model_execution_cases.csv
+          parity/results/r-model-execution.json
+          parity/results/python-model-execution.json
+          parity/results/model-execution-report.json
+      - name: Execute Python nested-resampling fixtures
+        run: >-
+          python parity/run_python_nested_resampling.py
+          parity/fixtures/nested_resampling.json
+          parity/results/python-nested-resampling.json
+      - name: Execute R nested-resampling fixtures
+        shell: bash
+        run: >-
+          Rscript parity/run_r_nested_resampling.R
+          parity/fixtures/nested_resampling.json
+          parity/results/r-nested-resampling.json
+      - name: Compare nested-resampling behavior
+        run: >-
+          python parity/compare_nested_resampling.py
+          parity/fixtures/nested_resampling.json
+          parity/nested_resampling_cases.csv
+          parity/results/r-nested-resampling.json
+          parity/results/python-nested-resampling.json
+          parity/results/nested-resampling-report.json
+      - name: Execute Python external-validation fixtures
+        run: >-
+          python parity/run_python_external_validation.py
+          parity/fixtures/external_validation.json
+          parity/results/python-external-validation.json
+      - name: Execute R external-validation fixtures
+        shell: bash
+        run: >-
+          Rscript parity/run_r_external_validation.R
+          parity/fixtures/external_validation.json
+          parity/results/r-external-validation.json
+      - name: Compare external-validation behavior
+        run: >-
+          python parity/compare_external_validation.py
+          parity/fixtures/external_validation.json
+          parity/external_validation_cases.csv
+          parity/results/r-external-validation.json
+          parity/results/python-external-validation.json
+          parity/results/external-validation-report.json
+      - name: Execute Python final-reporting fixtures
+        run: >-
+          python parity/run_python_final_reporting.py
+          parity/fixtures/final_reporting.json
+          parity/results/python-final-reporting.json
+      - name: Execute R final-reporting fixtures
+        shell: bash
+        run: >-
+          Rscript parity/run_r_final_reporting.R
+          parity/fixtures/final_reporting.json
+          parity/results/r-final-reporting.json
+      - name: Compare final-reporting behavior
+        run: >-
+          python parity/compare_final_reporting.py
+          parity/fixtures/final_reporting.json
+          parity/final_reporting_cases.csv
+          parity/results/r-final-reporting.json
+          parity/results/python-final-reporting.json
+          parity/results/final-reporting-report.json
+      - name: Build stable API parity matrix
+        run: >-
+          python parity/build_matrix.py
+          reference/r_api_inventory.csv
+          parity/results/stable-api-matrix.csv
+          parity/core_cases.csv
+          parity/results/core-report.json
+          parity/governance_cases.csv
+          parity/results/governance-report.json
+          parity/leakage_cases.csv
+          parity/results/leakage-report.json
+          parity/splitting_cases.csv
+          parity/results/splitting-report.json
+          parity/resampling_cases.csv
+          parity/results/resampling-report.json
+          parity/diagnostics_cases.csv
+          parity/results/diagnostics-report.json
+          parity/calibration_cases.csv
+          parity/results/calibration-report.json
+          parity/preprocessing_cases.csv
+          parity/results/preprocessing-report.json
+          parity/synthetic_cases.csv
+          parity/results/synthetic-report.json
+          parity/target_uncertainty_cases.csv
+          parity/results/target-uncertainty-report.json
+          parity/metrics_engines_cases.csv
+          parity/results/metrics-engines-report.json
+          parity/resample_outputs_cases.csv
+          parity/results/resample-outputs-report.json
+          parity/tuning_objects_cases.csv
+          parity/results/tuning-objects-report.json
+          parity/model_execution_cases.csv
+          parity/results/model-execution-report.json
+          parity/nested_resampling_cases.csv
+          parity/results/nested-resampling-report.json
+          parity/external_validation_cases.csv
+          parity/results/external-validation-report.json
+          parity/final_reporting_cases.csv
+          parity/results/final-reporting-report.json
+      - name: Upload parity evidence
+        if: always()
+        uses: actions/upload-artifact@v4
+        with:
+          name: gp3ml-r-python-parity
+          path: parity/results/
+          if-no-files-found: warn