github-agent 1.4.1__tar.gz → 2.4.1__tar.gz

{github_agent-1.4.1 → github_agent-2.4.1}/PKG-INFO

@@ -1,33 +1,30 @@
 Metadata-Version: 2.4
 Name: github-agent
-Version: 1.4.1
+Version: 2.4.1
 Summary: GitHub Agent for MCP
-Author-email: Audel Rouhi <knucklessg1@gmail.com>
+Author-email: Project Maintainers <maintainers@users.noreply.github.com>
 License: MIT
 Classifier: Development Status :: 5 - Production/Stable
 Classifier: License :: Public Domain
 Classifier: Environment :: Console
 Classifier: Operating System :: POSIX :: Linux
 Classifier: Programming Language :: Python :: 3
-Requires-Python: <3.15,>=3.11
+Requires-Python: >=3.12
 Description-Content-Type: text/markdown
 License-File: LICENSE
-Requires-Dist: agent-utilities[mcp]>=1.0.0
-Requires-Dist: gql[requests]>=4.0.0
+Requires-Dist: gql[requests]>=4.4.0
+Requires-Dist: requests>=2.34.2
+Requires-Dist: agent-connector-sdk[mcp]<1.0.0,>=0.3.5
 Provides-Extra: mcp
-Requires-Dist: agent-utilities[mcp]>=1.0.0; extra == "mcp"
-Provides-Extra: agent
-Requires-Dist: agent-utilities[agent,logfire]>=1.0.0; extra == "agent"
 Provides-Extra: all
-Requires-Dist: agent-utilities[agent,logfire,mcp]>=1.0.0; extra == "all"
 Provides-Extra: test
-Requires-Dist: pytest-xdist>=3.6.0; extra == "test"
-Requires-Dist: pytest; extra == "test"
-Requires-Dist: pytest-asyncio; extra == "test"
+Requires-Dist: pytest-xdist>=3.8.0; extra == "test"
+Requires-Dist: pytest>=9.1.1; extra == "test"
+Requires-Dist: pytest-asyncio>=1.4.0; extra == "test"
 Dynamic: license-file
 
 # Github Agent
-## CLI or API | MCP | Agent
+## CLI or API | MCP
 
 ![PyPI - Version](https://img.shields.io/pypi/v/github-agent)
 ![MCP Server](https://badge.mcpx.dev?type=server 'MCP Server')
@@ -48,10 +45,9 @@ Dynamic: license-file
 ![PyPI - Wheel](https://img.shields.io/pypi/wheel/github-agent)
 ![PyPI - Implementation](https://img.shields.io/pypi/implementation/github-agent)
 
-*Version: 1.4.1*
+*Version: 2.4.1*
 
 > **Documentation** — Installation, deployment, and usage across the MCP, API, and
-> CLI interfaces, including the integrated A2A agent server, are maintained in the
 > [official documentation](https://knuckles-team.github.io/github-agent/).
 
 ---
@@ -65,7 +61,7 @@ Dynamic: license-file
 ## Key Features
 
 - **Consolidated Action-Routed MCP Tools:** Minimizes token overhead and eliminates tool bloat in LLM contexts by grouping methods into optimized, togglable tool modules.
-- **Enterprise-Grade Security:** Comprehensive support for Eunomia policies, OIDC token delegation, and granular execution context tracking.
+- **Enterprise-Grade Security:** Complete support for Eunomia policies, OIDC token delegation, and granular execution context tracking.
 - **Integrated Graph Agent:** Built-in Pydantic AI agent supporting the Agent Control Protocol (ACP) and standard Web interfaces (AG-UI).
 - **Native Telemetry & Tracing:** Out-of-the-box OpenTelemetry exports and native Langfuse tracing.
 
@@ -73,7 +69,7 @@ Dynamic: license-file
 
 ## CLI or API
 
-This agent wraps the GitHub Agent for MCP API. You can interact with it programmatically or via its integrated execution entrypoints.
+This agent wraps the GitHub Agent for MCP API. The operator can interact with it programmatically or via its integrated execution entrypoints.
 
 Detailed instructions on how to use the underlying API wrappers, extended schema bindings, and developer SDK references are maintained in [docs/index.md](docs/index.md).
 
@@ -81,7 +77,7 @@ Detailed instructions on how to use the underlying API wrappers, extended schema
 
 ## MCP
 
-This server utilizes dynamic Action-Routed tools to optimize token overhead and maximize IDE compatibility.
+This server use dynamic Action-Routed tools to optimize token overhead and maximize IDE compatibility.
 
 ### Available MCP Tools
 
@@ -89,13 +85,14 @@ _Auto-generated from the live MCP server — do not edit by hand._
 
 <!-- MCP-TOOLS-TABLE:START -->
 
-#### Condensed action-routed tools (default — `MCP_TOOL_MODE=condensed`)
+#### Condensed action-routed tools (`MCP_TOOL_MODE=condensed`)
 
 | MCP Tool | Toggle Env Var | Description |
 |----------|----------------|-------------|
 | `github_actions` | `ACTIONTOOL` | Manage GitHub actions workflows and runs. |
 | `github_branches` | `BRANCHTOOL` | Manage GitHub branches. |
 | `github_collaborators` | `COLLABORATORTOOL` | Manage repository collaborators. |
+| `github_comments` | `COMMENTTOOL` | Manage GitHub issue and pull-request comments. |
 | `github_commits` | `COMMITTOOL` | Manage GitHub commits. |
 | `github_contents` | `CONTENTTOOL` | Manage GitHub contents. |
 | `github_dependabot` | `DEPENDABOTTOOL` | Review and manage GitHub Dependabot vulnerability alerts. |
@@ -113,15 +110,17 @@ _Auto-generated from the live MCP server — do not edit by hand._
 #### Verbose 1:1 API-mapped tools (`MCP_TOOL_MODE=verbose` or `both`)
 
 <details>
-<summary>76 per-operation tools — one per public API method (click to expand)</summary>
+<summary>95 per-operation tools — one per public API method (click to expand)</summary>
 
 | MCP Tool | Toggle Env Var | Description |
 |----------|----------------|-------------|
 | `github_add_collaborator` | `APITOOL` | Add a collaborator to a repository. |
 | `github_cancel_workflow_run` | `APITOOL` | Cancel a workflow run. |
 | `github_create_branch` | `APITOOL` | Create a new branch in a repository (using git ref creation). |
+| `github_create_commit_comment` | `APITOOL` | Create a comment on a commit. |
 | `github_create_content` | `APITOOL` | Create a file in a repository. |
 | `github_create_issue` | `APITOOL` | Create a new issue in a repository. |
+| `github_create_issue_comment` | `APITOOL` | Create a comment on an issue or pull request. |
 | `github_create_or_update_repo_secret` | `APITOOL` | Create or update a repository Actions secret. |
 | `github_create_organization` | `APITOOL` | Create an organization — GitHub Enterprise Server ONLY. |
 | `github_create_organization_repository` | `APITOOL` | Create a repository in an organization. |
@@ -129,26 +128,33 @@ _Auto-generated from the live MCP server — do not edit by hand._
 | `github_create_pull_request` | `APITOOL` | Create a new pull request in a repository. |
 | `github_create_pull_request_review` | `APITOOL` | Create a review on a pull request. |
 | `github_create_release` | `APITOOL` | Create a new repository release. |
-| `github_create_repository` | `APITOOL` | Create a new repository for the authenticated user. |
+| `github_create_repository` | `APITOOL` | Create a repository for the authenticated user, or for an organization when 'org' is given. |
+| `github_create_review_comment` | `APITOOL` | Create an inline review comment on a pull request's diff. |
+| `github_create_review_comment_reply` | `APITOOL` | Reply to an existing pull-request review comment thread. |
 | `github_delete_branch` | `APITOOL` | Delete a branch in a repository. |
 | `github_delete_branch_protection` | `APITOOL` | Delete branch protection configuration. |
+| `github_delete_commit_comment` | `APITOOL` | Permanently delete a commit comment. |
 | `github_delete_content` | `APITOOL` | Delete a file in a repository. |
+| `github_delete_issue_comment` | `APITOOL` | Permanently delete an issue/PR comment. |
 | `github_delete_organization` | `APITOOL` | Schedule an organization for deletion. IRREVERSIBLE. |
 | `github_delete_pages` | `APITOOL` | Disable GitHub Pages for a repository and delete the site. |
 | `github_delete_release` | `APITOOL` | Delete a repository release. |
 | `github_delete_repo_secret` | `APITOOL` | Delete a repository Actions secret. |
 | `github_delete_repository` | `APITOOL` | Delete a repository. |
+| `github_delete_review_comment` | `APITOOL` | Permanently delete a pull-request review comment. |
 | `github_delete_workflow_run` | `APITOOL` | Delete a workflow run. |
 | `github_get_branch` | `APITOOL` | Get a single branch in a repository. |
 | `github_get_branch_protection` | `APITOOL` | Get branch protection configuration. |
 | `github_get_branches` | `APITOOL` | List branches for a repository. |
 | `github_get_collaborators` | `APITOOL` | List collaborators for a repository. |
 | `github_get_commit` | `APITOOL` | Get a single commit in a repository. |
+| `github_get_commit_comment` | `APITOOL` | Get a single commit comment. |
 | `github_get_commits` | `APITOOL` | List commits for a repository. |
 | `github_get_contents` | `APITOOL` | Get contents of a file or directory in a repository. |
 | `github_get_dependabot_alert` | `APITOOL` | Get a single Dependabot alert. |
 | `github_get_dependabot_alerts` | `APITOOL` | List Dependabot alerts for a repository. |
 | `github_get_issue` | `APITOOL` | Get a single issue in a repository. |
+| `github_get_issue_comment` | `APITOOL` | Get a single issue/PR comment. |
 | `github_get_issues` | `APITOOL` | List issues for a repository. |
 | `github_get_org_dependabot_alerts` | `APITOOL` | List Dependabot alerts for an entire organization. |
 | `github_get_org_members` | `APITOOL` | List members for an organization. |
@@ -166,13 +172,20 @@ _Auto-generated from the live MCP server — do not edit by hand._
 | `github_get_repo_secrets` | `APITOOL` | List repository Actions secrets names. |
 | `github_get_repositories` | `APITOOL` | List repositories for the authenticated user. |
 | `github_get_repository` | `APITOOL` | Get a specific repository. |
+| `github_get_review_comment` | `APITOOL` | Get a single pull-request review comment. |
 | `github_get_workflow_job_logs` | `APITOOL` | Download the plaintext logs for a single workflow job. |
 | `github_get_workflow_run` | `APITOOL` | Get a single workflow run. |
 | `github_get_workflow_run_jobs` | `APITOOL` | List the jobs for a workflow run (optional ``filter``: latest/all). |
 | `github_get_workflow_runs` | `APITOOL` | List workflow runs for a repository. |
 | `github_get_workflows` | `APITOOL` | List workflows for a repository. |
+| `github_list_commit_comments` | `APITOOL` | List comments on a single commit. |
+| `github_list_issue_comments` | `APITOOL` | List comments on an issue or pull request. |
 | `github_list_organizations` | `APITOOL` | List organizations. |
 | `github_list_pages_builds` | `APITOOL` | List GitHub Pages builds for a repository (newest first). |
+| `github_list_repo_commit_comments` | `APITOOL` | List every commit comment in a repository. |
+| `github_list_repo_issue_comments` | `APITOOL` | List every issue/PR comment in a repository. |
+| `github_list_repo_review_comments` | `APITOOL` | List every pull-request review comment in a repository. |
+| `github_list_review_comments` | `APITOOL` | List review (inline code) comments on a pull request. |
 | `github_merge_pull_request` | `APITOOL` | Merge a pull request (``merge_method`` is merge, squash, or rebase). |
 | `github_remove_collaborator` | `APITOOL` | Remove a collaborator from a repository. |
 | `github_remove_organization_member` | `APITOOL` | Remove a user from an organization (repositories access included). |
@@ -185,27 +198,30 @@ _Auto-generated from the live MCP server — do not edit by hand._
 | `github_set_organization_membership` | `APITOOL` | Add a user to an organization or update their role. |
 | `github_trigger_workflow_dispatch` | `APITOOL` | Trigger a workflow dispatch event. |
 | `github_update_branch_protection` | `APITOOL` | Update branch protection configuration. |
+| `github_update_commit_comment` | `APITOOL` | Edit a commit comment. |
 | `github_update_content` | `APITOOL` | Update a file in a repository. |
 | `github_update_dependabot_alert` | `APITOOL` | Update the state of a Dependabot alert. |
 | `github_update_issue` | `APITOOL` | Update an issue in a repository. |
+| `github_update_issue_comment` | `APITOOL` | Edit an issue/PR comment. |
 | `github_update_organization` | `APITOOL` | Update an organization's profile and member settings. |
 | `github_update_pages` | `APITOOL` | Update the GitHub Pages configuration for a repository. |
 | `github_update_pull_request` | `APITOOL` | Update a pull request. |
 | `github_update_release` | `APITOOL` | Update (PATCH) a repository release. |
 | `github_update_repository` | `APITOOL` | Update a repository. |
+| `github_update_review_comment` | `APITOOL` | Edit a pull-request review comment. |
 
 </details>
 
-_16 action-routed tool(s) (default) · 76 verbose 1:1 tool(s). Each is enabled unless its `<DOMAIN>TOOL` toggle is set false; `MCP_TOOL_MODE` selects the surface (`condensed` default · `verbose` 1:1 · `both`). Auto-generated — do not edit._
+_17 action-routed tool(s) · 95 verbose 1:1 tool(s). Each is enabled unless its `<DOMAIN>TOOL` toggle is set false; `MCP_TOOL_MODE` selects the surface (**`intent` default** — the six verb-tools, granular set loaded on demand · `condensed` action-routed · `verbose` 1:1 · `both`). Auto-generated — do not edit._
 <!-- MCP-TOOLS-TABLE:END -->
 
-Detailed tool schemas, parameter shapes, and validation constraints are preserved in [docs/mcp.md](docs/mcp.md).
+Detailed tool schemas, parameter shapes, and validation constraints are preserved in [docs/usage.md](docs/usage.md).
 
 ### Dynamic Tool Selection & Visibility
 
-This MCP server supports dynamic toolset selection and visibility filtering at runtime. This allows you to restrict the set of exposed tools in order to prevent blowing up the LLM's context window.
+This MCP server supports dynamic toolset selection and visibility filtering at runtime. This allows the operator to restrict the set of exposed tools to prevent blowing up the LLM's context window.
 
-You can configure tool filtering via multiple input channels:
+The operator can configure tool filtering via multiple input channels:
 
 - **CLI Arguments:** Pass `--tools` or `--toolsets` (or their disabled counterparts `--disabled-tools` and `--disabled-toolsets`) during startup.
 - **Environment Variables:** Define standard environment variables:
@@ -214,7 +230,7 @@ You can configure tool filtering via multiple input channels:
 - **HTTP SSE Request Headers:** Pass custom headers during transport initialization:
   - `x-mcp-enabled-tools` / `x-mcp-disabled-tools`
   - `x-mcp-enabled-tags` / `x-mcp-disabled-tags`
-- **HTTP SSE Request Query Parameters:** Append query parameters directly to your transport connection URL:
+- **HTTP SSE Request Query Parameters:** Append query parameters directly to the operator's transport connection URL:
   - `?tools=tool1,tool2`
   - `?tags=tag1`
 
@@ -226,11 +242,10 @@ When query strings or parameters are supplied, an LLM-free **Knowledge Graph res
 
 <!-- MCP-CONFIG-EXAMPLES:START -->
 
-> **Install the slim `[mcp]` extra.** All examples install `github-agent[mcp]` — the
-> MCP-server extra that pulls only the FastMCP / FastAPI tooling (`agent-utilities[mcp]`).
-> It deliberately **excludes** the heavy agent runtime (`pydantic-ai`, the epistemic-graph
-> engine, `dspy`, `llama-index`), so `uvx` / container installs are far smaller. Use the
-> full `[agent]` extra only when you need the integrated Pydantic AI agent.
+> **Install the connector-focused `[mcp]` extra.** Examples use `github-agent[mcp]` to add
+> FastMCP / FastAPI through `agent-connector-sdk`; the required Agent Connector SDK core
+> still carries `epistemic-graph[full]`. The `[agent-runtime]` extra additionally
+> enables model orchestration.
 
 #### stdio Transport (local IDEs — Cursor, Claude Desktop, VS Code)
 
@@ -245,10 +260,11 @@ When query strings or parameters are supplied, an LLM-free **Knowledge Graph res
         "github-mcp"
       ],
       "env": {
-        "MCP_TOOL_MODE": "condensed",
+        "MCP_TOOL_MODE": "intent",
         "ACTIONTOOL": "True",
         "BRANCHTOOL": "True",
         "COLLABORATORTOOL": "True",
+        "COMMENTTOOL": "True",
         "COMMITTOOL": "True",
         "CONTENTTOOL": "True",
         "DEPENDABOTTOOL": "True",
@@ -257,7 +273,6 @@ When query strings or parameters are supplied, an LLM-free **Knowledge Graph res
         "GITHUB_HTTP_READ_TIMEOUT": "30",
         "GITHUB_TOKEN": "your_github_token_here",
         "GITHUB_URL": "https://api.github.com",
-        "GITHUB_VERIFY": "True",
         "GRAPHQLTOOL": "True",
         "INGESTTOOL": "True",
         "ISSUETOOL": "True",
@@ -272,6 +287,10 @@ When query strings or parameters are supplied, an LLM-free **Knowledge Graph res
 }
 ```
 
+Runtime references require an alias-aware launcher such as Arbora. Other
+launchers must omit those entries and inject the resolved values through their
+own runtime secret boundary.
+
 #### Streamable-HTTP Transport (networked / production)
 
 ```json
@@ -290,12 +309,13 @@ When query strings or parameters are supplied, an LLM-free **Knowledge Graph res
       ],
       "env": {
         "TRANSPORT": "streamable-http",
-        "HOST": "0.0.0.0",
+        "HOST": "127.0.0.1",
         "PORT": "8000",
-        "MCP_TOOL_MODE": "condensed",
+        "MCP_TOOL_MODE": "intent",
         "ACTIONTOOL": "True",
         "BRANCHTOOL": "True",
         "COLLABORATORTOOL": "True",
+        "COMMENTTOOL": "True",
         "COMMITTOOL": "True",
         "CONTENTTOOL": "True",
         "DEPENDABOTTOOL": "True",
@@ -304,7 +324,6 @@ When query strings or parameters are supplied, an LLM-free **Knowledge Graph res
         "GITHUB_HTTP_READ_TIMEOUT": "30",
         "GITHUB_TOKEN": "your_github_token_here",
         "GITHUB_URL": "https://api.github.com",
-        "GITHUB_VERIFY": "True",
         "GRAPHQLTOOL": "True",
         "INGESTTOOL": "True",
         "ISSUETOOL": "True",
@@ -331,19 +350,22 @@ Alternatively, connect to a pre-deployed Streamable-HTTP instance by `url`:
 }
 ```
 
-Deploying the Streamable-HTTP server via Docker:
+Run a reviewed container image as a least-privilege stdio child (no
+listener or published port):
 
 ```bash
-docker run -d \
-  --name github-mcp-mcp \
-  -p 8000:8000 \
-  -e TRANSPORT=streamable-http \
-  -e HOST=0.0.0.0 \
-  -e PORT=8000 \
-  -e MCP_TOOL_MODE=condensed \
+docker run -i --rm \
+  --read-only \
+  --cap-drop=ALL \
+  --security-opt=no-new-privileges \
+  --pids-limit=256 \
+  --tmpfs /tmp:rw,noexec,nosuid,nodev,size=64m \
+  -e TRANSPORT=stdio \
+  -e MCP_TOOL_MODE=intent \
   -e ACTIONTOOL=True \
   -e BRANCHTOOL=True \
   -e COLLABORATORTOOL=True \
+  -e COMMENTTOOL=True \
   -e COMMITTOOL=True \
   -e CONTENTTOOL=True \
   -e DEPENDABOTTOOL=True \
@@ -352,7 +374,6 @@ docker run -d \
   -e GITHUB_HTTP_READ_TIMEOUT=30 \
   -e GITHUB_TOKEN=your_github_token_here \
   -e GITHUB_URL=https://api.github.com \
-  -e GITHUB_VERIFY=True \
   -e GRAPHQLTOOL=True \
   -e INGESTTOOL=True \
   -e ISSUETOOL=True \
@@ -361,25 +382,30 @@ docker run -d \
   -e RELEASETOOL=True \
   -e REPOTOOL=True \
   -e SEARCHTOOL=True \
-  knucklessg1/github-agent:mcp
+  registry.example.invalid/github-agent@sha256:<digest> github-mcp
 ```
 
+For containerized network HTTP, supply an authenticated TLS ingress (or
+direct server TLS), exact `MCP_ALLOWED_HOSTS`, and an exact trusted-proxy
+CIDR policy through the operator-owned deployment profile. The generator
+does not emit an unauthenticated non-loopback listener.
+
 _Auto-generated from the code-read env surface (`MCP_TOOL_MODE` + package vars) — do not edit._
 <!-- MCP-CONFIG-EXAMPLES:END -->
 
 <!-- BEGIN GENERATED: additional-deployment-options -->
 ### Additional Deployment Options
 
-`github-agent` can also run as a **local container** (Docker / Podman / `uv`) or be
-consumed from a **remote deployment**. The
-[Deployment guide](https://knuckles-team.github.io/github-agent/deployment/) has full, copy-paste
-`mcp_config.json` for all four transports — **stdio**, **streamable-http**,
-**local container / uv**, and **remote URL**:
+`github-agent` can run as a local stdio process or container, or behind a remote
+network boundary. The
+[Deployment guide](https://knuckles-team.github.io/github-agent/deployment/) carries
+the detailed transport contract.
 
-- **Local container / uv** — launch the server from `mcp_config.json` via `uvx`,
-  `docker run`, or `podman run`, or point at a local streamable-http container by `url`.
-- **Remote URL** — connect to a server deployed behind Caddy at
-  `http://github-mcp.arpa/mcp` using the `"url"` key.
+- **Local container** — launch a reviewed immutable image as a least-privilege
+  stdio child with no listener or published port.
+- **Remote URL** — connect through an operator-supplied authenticated HTTPS
+  ingress. Keep its URL, outbound identity references, trust profile, and exact
+  `MCP_ALLOWED_HOSTS` in `AgentConfig`.
 <!-- END GENERATED: additional-deployment-options -->
 
 ---
@@ -397,24 +423,26 @@ consumed from a **remote deployment**. The
 | `TRANSPORT` | `stdio` | options: stdio, streamable-http, sse |
 | `ENABLE_OTEL` | `True` |  |
 | `OTEL_EXPORTER_OTLP_ENDPOINT` | `http://localhost:8080/api/public/otel` |  |
-| `OTEL_EXPORTER_OTLP_PUBLIC_KEY` | `pk-...` |  |
-| `OTEL_EXPORTER_OTLP_SECRET_KEY` | `sk-...` |  |
+| `OTEL_EXPORTER_OTLP_PUBLIC_KEY` | secret-injected |  |
+| `OTEL_EXPORTER_OTLP_SECRET_KEY` | secret-injected |  |
 | `OTEL_EXPORTER_OTLP_PROTOCOL` | `http/protobuf` |  |
 | `EUNOMIA_TYPE` | `none` | options: none, embedded, remote |
 | `EUNOMIA_POLICY_FILE` | `mcp_policies.json` |  |
 | `EUNOMIA_REMOTE_URL` | `http://eunomia-server:8000` |  |
 | `GITHUB_URL` | `https://api.github.com` |  |
-| `GITHUB_VERIFY` | `True` |  |
-| `GITHUB_SSL_VERIFY` | `True` | GITHUB_SSL_VERIFY takes precedence over GITHUB_VERIFY when set |
+| `TLS_PROFILE` | `private-ca` | AgentConfig named transport profile |
+| `TLS_PROFILE_REF` | `secret://transport/provider` | Direct runtime profile reference |
+| `TLS_PROFILES_REF` | `secret://transport/catalog` | Named runtime profile catalog |
 | `GITHUB_ALLOW_DESTRUCTIVE` | `False` | Allow destructive (delete/force) operations |
 | `GITHUB_HTTP_CONNECT_TIMEOUT` | `10` | HTTP client timeouts (seconds) |
 | `GITHUB_HTTP_READ_TIMEOUT` | `30` |  |
 | `DEBUG` | `False` |  |
 | `PYTHONUNBUFFERED` | `1` |  |
-| `GITHUB_TOKEN` | `your_github_token_here` |  |
-| `ACTIONTOOL` | `True` | MCP tools table (condensed action-routed surface). |
+| `GITHUB_TOKEN` | secret-injected |  |
+| `ACTIONTOOL` | `True` | These names match the authoritative "Toggle Env Var" column in the README MCP tools table (condensed action-routed surface). |
 | `BRANCHTOOL` | `True` |  |
 | `COLLABORATORTOOL` | `True` |  |
+| `COMMENTTOOL` | `True` |  |
 | `COMMITTOOL` | `True` |  |
 | `CONTENTTOOL` | `True` |  |
 | `DEPENDABOTTOOL` | `True` |  |
@@ -427,24 +455,26 @@ consumed from a **remote deployment**. The
 | `REPOTOOL` | `True` |  |
 | `SEARCHTOOL` | `True` |  |
 
-#### Inherited agent-utilities variables (apply to every connector)
+#### Inherited agent-connector-sdk variables (apply to every connector)
 
 | Variable | Example | Description |
 |----------|---------|-------------|
-| `MCP_TOOL_MODE` | `condensed` | Tool surface: `condensed` | `verbose` | `both` |
+| `MCP_TOOL_MODE` | `intent` | Tool surface: `intent` \| `condensed` \| `verbose` \| `both` |
 | `MCP_ENABLED_TOOLS` | — | Comma-separated tool allow-list |
 | `MCP_DISABLED_TOOLS` | — | Comma-separated tool deny-list |
 | `MCP_ENABLED_TAGS` | — | Comma-separated tag allow-list |
 | `MCP_DISABLED_TAGS` | — | Comma-separated tag deny-list |
-| `MCP_CLIENT_AUTH` | — | Outbound MCP auth (`oidc-client-credentials` for fleet calls) |
+| `MCP_CLIENT_AUTH` | — | Outbound MCP child auth: `oidc-client-credentials` \| `basic` \| `none` |
 | `OIDC_CLIENT_ID` | — | OIDC client id (service-account auth) |
-| `OIDC_CLIENT_SECRET` | — | OIDC client secret (service-account auth) |
+| `OIDC_CLIENT_SECRET_REF` | `secret://identity/oidc-client-secret` | Runtime secret reference for the OIDC service account |
+| `MCP_BASIC_AUTH_USERNAME` | — | HTTP Basic username (`MCP_CLIENT_AUTH=basic`) |
+| `MCP_BASIC_AUTH_PASSWORD_REF` | `secret://identity/mcp-basic-password` | Runtime secret reference for HTTP Basic auth (`MCP_CLIENT_AUTH=basic`) |
 | `MCP_URL` | `http://localhost:8000/mcp` | URL of the MCP server the agent connects to |
 | `PROVIDER` | `openai` | LLM provider for the agent |
 | `MODEL_ID` | `gpt-4o` | Model id for the agent |
 | `ENABLE_WEB_UI` | `True` | Serve the AG-UI web interface |
 
-_34 package + 12 inherited variable(s). Auto-generated from `.env.example` + the shared agent-utilities set — do not edit._
+_36 package + 14 inherited variable(s). Auto-generated from `.env.example` + the shared agent-connector-sdk set — do not edit._
 <!-- ENV-VARS-TABLE:END -->
 
 
@@ -453,9 +483,9 @@ Every variable the server reads.
 ### Connection & Credentials
 | Variable | Description | Default |
 |----------|-------------|---------|
-| `GITHUB_URL` | GitHub REST API base URL (use your GitHub Enterprise Server URL for self-hosted) | `https://api.github.com` |
+| `GITHUB_URL` | GitHub REST API base URL (use the operator's GitHub Enterprise Server URL for self-hosted) | `https://api.github.com` |
 | `GITHUB_TOKEN` | GitHub Personal Access Token / OAuth token (`Authorization: Bearer <token>`) | — |
-| `GITHUB_VERIFY` | TLS certificate verification | `True` |
+| `TLS_PROFILE` / `TLS_PROFILE_REF` | AgentConfig transport profile selector; peer verification is mandatory | — |
 
 ### MCP server / transport
 | Variable | Description | Default |
@@ -511,7 +541,7 @@ See [`.env.example`](.env.example) for a copy-paste starting point.
 
 ## Agent
 
-This repository features a fully integrated Pydantic AI Graph Agent. It communicates over the **Agent Control Protocol (ACP)** and interacts seamlessly with the **Agent Web UI (AG-UI)** and Terminal interface.
+This repository features a fully integrated Pydantic AI Graph Agent. It communicates over the **Agent Control Protocol (ACP)** and interacts smoothly with the **Agent Web UI (AG-UI)** and Terminal interface.
 
 ### Running the Agent CLI
 To start the interactive command-line agent:
@@ -519,7 +549,7 @@ To start the interactive command-line agent:
 ```bash
 # Set credentials
 export GITHUB_URL="your_value"
-export GITHUB_VERIFY="your_value"
+# Configure TLS_PROFILE or TLS_PROFILE_REF through AgentConfig for private PKI.
 export DEBUG="your_value"
 export PYTHONUNBUFFERED="your_value"
 export GITHUB_TOKEN="your_value"
@@ -529,14 +559,12 @@ github-agent --provider openai --model-id gpt-4o
 ```
 
 ### Docker Compose Orchestration
-The following `docker/agent.compose.yml` configures the Agent, Web UI, and Terminal Interface together:
 
 ```yaml
 version: '3.8'
 
 services:
   github-agent-mcp:
-    image: knucklessg1/github-agent:mcp
     container_name: github-agent-mcp
     hostname: github-agent-mcp
     restart: always
@@ -561,8 +589,7 @@ services:
         max-size: "10m"
         max-file: "3"
 
-  github-agent-agent:
-    image: knucklessg1/github-agent:latest
+    image: example/github-agent@sha256:<digest>
     container_name: github-agent-agent
     hostname: github-agent-agent
     restart: always
@@ -596,13 +623,13 @@ services:
 
 ```
 
-Detailed graph node architecture explanations, custom skill configurations, and agentic trace guides are available in [docs/agent.md](docs/agent.md).
+Detailed graph node architecture explanations, custom skill configurations, and agentic trace guides are available in [docs/deployment.md](docs/deployment.md).
 
 ---
 
 ## Security & Governance
 
-Built directly upon the enterprise-ready [`agent-utilities`](https://github.com/Knuckles-Team/agent-utilities) core, standard security parameters are fully supported:
+Built directly upon the enterprise-ready [`agent-connector-sdk`](https://github.com/Knuckles-Team/agent-connector-sdk) core, standard security parameters are fully supported:
 
 ### Access Control & Policy Enforcement
 - **Eunomia Policies:** Fine-grained, policy-driven tool authorization. Supports `none`, local `embedded` (`mcp_policies.json`), or centralized `remote` modes.
@@ -610,7 +637,7 @@ Built directly upon the enterprise-ready [`agent-utilities`](https://github.com/
 - **Scoped Credentials:** Execution context runs restricted to the specific caller identity.
 
 ### Runtime Security Grid
-| Feature | Functionality | Enablement |
+| Feature | Feature | Enablement |
 |---------|---------------|------------|
 | **Tool Guard** | Sensitivity inspection with human-in-the-loop validation | Enabled by default |
 | **Prompt Injection Defense** | Input scanning, repetition monitoring, and recursive loop blocks | Enabled by default |
@@ -620,51 +647,43 @@ Built directly upon the enterprise-ready [`agent-utilities`](https://github.com/
 
 ## Installation
 
-Pick the extra that matches what you want to run:
+Pick the extra that matches what the operator want to run:
 
 | Extra | Installs | Use when |
 |-------|----------|----------|
-| `github-agent[mcp]` | Slim MCP server only (`agent-utilities[mcp]` — FastMCP/FastAPI) | You only run the **MCP server** (smallest install / image) |
-| `github-agent[agent]` | Full agent runtime (`agent-utilities[agent,logfire]` — Pydantic AI + the epistemic-graph engine) | You run the **integrated agent** |
+| `github-agent[mcp]` | Connector-focused MCP server (`agent-connector-sdk` — FastMCP/FastAPI + `epistemic-graph[full]`) | The operator only run the **MCP server** (smallest install / image) |
 | `github-agent[all]` | Everything (`mcp` + `agent` + `logfire`) | Development / both surfaces |
 
 ```bash
-# MCP server only (recommended for tool hosting — slim deps)
+# Connector-focused MCP server (includes the shared graph engine)
 uv pip install "github-agent[mcp]"
 
-# Full agent runtime (Pydantic AI + epistemic-graph engine)
-uv pip install "github-agent[agent]"
+# Agent runtime (adds model orchestration to the shared graph engine)
 
 # Everything (development)
 uv pip install "github-agent[all]"      # or: python -m pip install "github-agent[all]"
 ```
 
-### Container images (`:mcp` vs `:agent`)
+### Container images (`:mcp`)
 
-One multi-stage `docker/Dockerfile` builds two right-sized images, selected by `--target`:
+One multi-stage `docker/Dockerfile` builds the MCP-only image (`--target mcp`):
 
 | Image tag | Build target | Contents | Entrypoint |
 |-----------|--------------|----------|------------|
-| `knucklessg1/github-agent:mcp` | `--target mcp` | `github-agent[mcp]` — **slim**, no engine/`pydantic-ai`/`dspy`/`llama-index`/`tree-sitter` | `github-mcp` |
-| `knucklessg1/github-agent:latest` | `--target agent` (default) | `github-agent[agent]` — **full** agent runtime + epistemic-graph engine | `github-agent` |
 
 ```bash
-docker build --target mcp   -t knucklessg1/github-agent:mcp    docker/   # slim MCP server
-docker build --target agent -t knucklessg1/github-agent:latest docker/   # full agent
 ```
 
-`docker/mcp.compose.yml` runs the slim `:mcp` server; `docker/agent.compose.yml` runs the
-agent (`:latest`) with a co-located `:mcp` sidecar.
+agent (`immutable agent digest`) with a co-located `:mcp` sidecar.
 
 ### Knowledge-graph database (`epistemic-graph`)
 
-The **full agent** (`[agent]` / `:latest`) embeds the **epistemic-graph** engine (pulled in
-transitively via `agent-utilities[agent]`). For production — or to share one knowledge graph
-across multiple agents — run **epistemic-graph as its own database container** and point the
-agent at it instead of embedding it. Deployment recipes (single-node + Raft HA), connection
-config, and the full database architecture (with diagrams) are documented in the
+Agent Connector SDK core dependency (`epistemic-graph[full]`). The `[mcp]` extra keeps
+deployments can use the bundled engine. For production or shared state, run
+**epistemic-graph as a dedicated database service** and configure the runtime to use it.
+Deployment recipes (single-node + Raft HA), connection configuration, and architecture
+diagrams are documented in the
 [epistemic-graph deployment guide](https://knuckles-team.github.io/epistemic-graph/deployment/).
-The slim `[mcp]` server does **not** require the database.
 
 ---
 
@@ -686,39 +705,35 @@ recommended reference for installation, deployment, and day-to-day operation.
 
 ## Repository Owners
 
-<img width="100%" height="180em" src="https://github-readme-stats.vercel.app/api?username=Knucklessg1&show_icons=true&hide_border=true&&count_private=true&include_all_commits=true" />
+<img width="100%" height="180em" src="https://github-readme-stats.vercel.app/api?username=example&show_icons=true&hide_border=true&&count_private=true&include_all_commits=true" />
 
-![GitHub followers](https://img.shields.io/github/followers/Knucklessg1)
-![GitHub User's stars](https://img.shields.io/github/stars/Knucklessg1)
+![GitHub followers](https://img.shields.io/github/followers/example)
+![GitHub User's stars](https://img.shields.io/github/stars/example)
 
 ---
 
 ## Contribute
 
-Contributions are welcome! Please ensure code quality by executing local checks before submitting pull requests:
+Contributions are welcome! Please ensure code quality by running local checks before submitting pull requests:
 - Format code using `ruff format .`
 - Lint code using `ruff check .`
 - Validate type-safety with `mypy .`
-- Execute test suites using `pytest`
-
-
-<!-- BEGIN agent-os-genesis-deploy (generated; do not edit between markers) -->
+- Run test suites using `pytest`
 
-## Deploy with `agent-os-genesis`
 
-This package can be provisioned for you — skill-guided — by the **`agent-os-genesis`**
-universal skill (its *single-package deploy mode*): it picks your install method, seeds
-secrets to OpenBao/Vault (or `.env`), trusts your enterprise CA, registers the MCP
-server, and verifies it — the same machinery that stands up the whole Agent OS, narrowed
-to just this package. Ask your agent to **"deploy `github-agent` with agent-os-genesis"**.
 
-| Install mode | Command |
-|------|---------|
-| Bare-metal, prod (PyPI) | `uvx github-mcp` · or `uv tool install github-agent` |
-| Bare-metal, dev (editable) | `uv pip install -e ".[all]"` · or `pip install -e ".[all]"` |
-| Container, prod | deploy `knucklessg1/github-agent:latest` via docker-compose / swarm / podman / podman-compose / kubernetes |
-| Container, dev (editable) | deploy `docker/compose.dev.yml` (source-mounted at `/src`; edits live on restart) |
+<!-- GOVERNED-CAPABILITY:START -->
+## Governed capability contract
 
-Secrets are read-existing + seeded via `vault_sync` — you are only prompted for what's missing.
+This package ships a compact canonical skill surface with specialist procedures
+kept as referenced workflows. The current MCP tools, skill metadata,
+`connector_manifest.yml`, ontology, mappings, shapes, fixtures, migrations,
+tool-schema fingerprints, and certification metadata form one versioned
+capability contract. Validate them together; do not rely on stale tool names or
+historical per-task skill wrappers.
 
-<!-- END agent-os-genesis-deploy -->
+Runtime endpoints, credentials, certificate trust, tenant identity, retention,
+and observability policy are deployment inputs and are never packaged values.
+See [Configuration, trust, and privacy](docs/configuration.md) before enabling a
+network transport, connector ingestion, Arbora delegation, or trace export.
+<!-- GOVERNED-CAPABILITY:END -->