gismap 0.1.0__tar.gz

gismap-0.1.0/.coveragerc

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+[report]
+exclude_lines =
+    pragma: no cover
+    raise NotImplementedError
+    if __name__ == '__main__':

gismap-0.1.0/.editorconfig

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+# http://editorconfig.org
+
+root = true
+
+[*]
+indent_style = space
+indent_size = 4
+trim_trailing_whitespace = true
+insert_final_newline = true
+charset = utf-8
+end_of_line = lf
+
+[*.bat]
+indent_style = tab
+end_of_line = crlf
+
+[LICENSE]
+insert_final_newline = false
+
+[Makefile]
+indent_style = tab

gismap-0.1.0/.github/ISSUE_TEMPLATE.md

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+* Generic Information Search: Mapping and Analysis of Publications version:
+* Python version:
+* Operating System:
+
+### Description
+
+Describe what you were trying to get done.
+Tell us what happened, what went wrong, and what you expected to happen.
+
+### What I Did
+
+```
+Paste the command(s) you ran and the output.
+If there was a crash, please include the traceback here.
+```

gismap-0.1.0/.github/workflows/build.yml

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+# This workflow will install the package with UV,
+# run the tests on multiple Python versions,
+# and upload the results on codecov.
+name: build
+
+on:
+  push:
+    branches:
+      - main
+  pull_request:
+    types: [opened, synchronize, reopened]
+  schedule:
+    - cron: '30 5 1,15 * *'
+env:
+  NUMBA_DISABLE_JIT: 1
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: ["3.10", "3.11", "3.12", "3.13"]
+    steps:
+
+    - name: Checkout
+      uses: actions/checkout@v4
+
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v5
+      with:
+        python-version: ${{ matrix.python-version }}
+
+    - name: Set up uv
+      uses: astral-sh/setup-uv@v5
+      with:
+        version: "0.7.2"
+
+    - name: Run tests
+      run: |
+        uv sync --all-extras
+        uv run pytest
+
+    - name: Upload coverage reports to Codecov with GitHub Action on Python 3.12
+      uses: codecov/codecov-action@v4
+      if: ${{ matrix.python-version == '3.12' }}
+      with:
+        file: ./coverage.xml
+        token: ${{ secrets.CODECOV_TOKEN }} # required

gismap-0.1.0/.github/workflows/docs.yml

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+# This workflow will generate the docs on each push,
+# and publish them on GitHub Pages if the branch is the main one.
+# To avoid size explosion, only the current version of pages is kept.
+
+name: docs
+
+on:
+  push:
+    branches:
+      - main
+
+jobs:
+  build-and-deploy:
+    runs-on: ubuntu-latest
+    steps:
+
+      - name: Checkout
+        uses: actions/checkout@v4
+        with:
+          persist-credentials: false
+
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: '3.12'
+
+      - name: Set up uv
+        uses: astral-sh/setup-uv@v5
+        with:
+          version: "0.7.13"
+
+      - name: Setup Pandoc
+        uses: pandoc/actions/setup@v1
+        with:
+          version: '3.6.3'
+
+      - name: Build Sphinx documentation
+        run: |
+          uv sync --all-extras
+          uv run sphinx-build -a -E -b html docs build
+
+      - name: Deploy Sphinx documentation on Github Pages
+        uses: JamesIves/github-pages-deploy-action@v4
+        if: github.ref == 'refs/heads/main'
+        with:
+          token: ${{ secrets.GITHUB_TOKEN }}
+          branch: gh-pages
+          folder: build/
+          single-commit: true

gismap-0.1.0/.github/workflows/release.yml

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+name: Publish to PyPI
+
+on:
+  release:
+    types: [published]
+
+jobs:
+  publish:
+    name: Publish Python Package
+    runs-on: ubuntu-latest
+    environment:
+      name: pypi
+    permissions:
+      id-token: write  # Required for PyPI trusted publishing
+
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+
+      - name: Install uv
+        uses: astral-sh/setup-uv@v5
+        with:
+          version: "0.7.2"  # Pin to specific uv version
+
+      - name: Build package
+        run: uv build --no-sources  # Recommended for production builds
+
+      - name: Publish to PyPI
+        run: uv publish -v dist/*

gismap-0.1.0/.gitignore

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+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+env/
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+.hypothesis/
+.pytest_cache/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# pyenv
+.python-version
+
+# celery beat schedule file
+celerybeat-schedule
+
+# SageMath parsed files
+*.sage.py
+
+# dotenv
+.env
+
+# virtualenv
+.venv
+venv/
+ENV/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+
+# IDE settings
+.vscode/
+
+# PyCharm project settings
+.idea
+/sandbox/

gismap-0.1.0/.run/All tests.run.xml

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+<component name="ProjectRunConfigurationManager">
+  <configuration default="false" name="All tests" type="tests" factoryName="py.test">
+    <module name="gismap" />
+    <option name="ENV_FILES" value="" />
+    <option name="INTERPRETER_OPTIONS" value="" />
+    <option name="PARENT_ENVS" value="true" />
+    <envs>
+      <env name="NUMBA_DISABLE_JIT" value="1" />
+    </envs>
+    <option name="SDK_HOME" value="" />
+    <option name="SDK_NAME" value="Python 3.12 (gismap)" />
+    <option name="WORKING_DIRECTORY" value="" />
+    <option name="IS_MODULE_SDK" value="false" />
+    <option name="ADD_CONTENT_ROOTS" value="true" />
+    <option name="ADD_SOURCE_ROOTS" value="true" />
+    <EXTENSION ID="PythonCoverageRunConfigurationExtension" runner="coverage.py" />
+    <option name="_new_keywords" value="&quot;&quot;" />
+    <option name="_new_parameters" value="&quot;&quot;" />
+    <option name="_new_additionalArguments" value="&quot;&quot;" />
+    <option name="_new_target" value="&quot;&quot;" />
+    <option name="_new_targetType" value="&quot;PATH&quot;" />
+    <method v="2" />
+  </configuration>
+</component>

gismap-0.1.0/.run/Generate docs.run.xml

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+<component name="ProjectRunConfigurationManager">
+  <configuration default="false" name="Build docs " type="docs" factoryName="Sphinx task">
+    <module name="gismap" />
+    <option name="ENV_FILES" value="" />
+    <option name="INTERPRETER_OPTIONS" value="" />
+    <option name="PARENT_ENVS" value="true" />
+    <option name="SDK_HOME" value="$PROJECT_DIR$/.venv/Scripts/python.exe" />
+    <option name="SDK_NAME" value="Python 3.12 (gismap)" />
+    <option name="WORKING_DIRECTORY" value="" />
+    <option name="IS_MODULE_SDK" value="false" />
+    <option name="ADD_CONTENT_ROOTS" value="true" />
+    <option name="ADD_SOURCE_ROOTS" value="true" />
+    <option name="docutils_input_file" value="$PROJECT_DIR$/docs" />
+    <option name="docutils_output_file" value="$PROJECT_DIR$/build" />
+    <option name="docutils_params" value="" />
+    <option name="docutils_task" value="html" />
+    <option name="docutils_open_in_browser" value="true" />
+    <method v="2" />
+  </configuration>
+</component>

gismap-0.1.0/AUTHORS.md

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+# Credits
+
+## Development Lead
+
+- Fabien Mathieu <fabien.mathieu@normalesup.org>
+
+## Contributors
+
+None yet. Why not be the first?

gismap-0.1.0/CONTRIBUTING.md

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+# Contributing
+
+Contributions are welcome, and they are greatly appreciated! Every little bit
+helps, and credit will always be given.
+
+You can contribute in many ways:
+
+## Types of Contributions
+
+### Report Bugs
+
+Report bugs at https://github.com/balouf/gismap/issues.
+
+If you are reporting a bug, please include:
+
+- Your operating system name and version.
+- Any details about your local setup that might be helpful in troubleshooting.
+- Detailed steps to reproduce the bug.
+
+### Fix Bugs
+
+Look through the GitHub issues for bugs. Anything tagged with "bug" and "help
+wanted" is open to whoever wants to implement it.
+
+### Implement Features
+
+Look through the GitHub issues for features. Anything tagged with "enhancement"
+and "help wanted" is open to whoever wants to implement it.
+
+### Write Documentation
+
+Generic Information Search: Mapping and Analysis of Publications could always use more documentation, whether as part of the
+official Generic Information Search: Mapping and Analysis of Publications docs, in docstrings, or even on the web in blog posts,
+articles, and such.
+
+### Submit Feedback
+
+The best way to send feedback is to file an issue at https://github.com/balouf/gismap/issues.
+
+If you are proposing a feature:
+
+- Explain in detail how it would work.
+- Keep the scope as narrow as possible, to make it easier to implement.
+- Remember that this is a volunteer-driven project, and that contributions
+  are welcome :)
+
+## Get Started!
+
+Ready to contribute? Here's how to set up `gismap` for local development.
+
+1. Fork the `gismap` repo on GitHub.
+
+2. Clone your fork locally::
+    ```console
+    $ git clone git@github.com:your_name_here/gismap.git
+    ```
+
+3. Install your local copy into a virtualenv. Assuming you have uv installed, this is how you set up your fork for local development:
+    ```console
+    $ cd gismap/
+    $ uv sync --all-extras
+    ```
+
+4. Create a branch for local development::
+    ```console
+    $ git checkout -b name-of-your-bugfix-or-feature
+    ```
+    Now you can make your changes locally.
+
+5. When you're done making changes, check that your changes pass the
+   tests:
+    ```console
+    $ uv run pytest
+    ```
+
+6. Commit your changes and push your branch to GitHub::
+    ```bash
+    $ git add .
+    $ git commit -m "Your detailed description of your changes."
+    $ git push origin name-of-your-bugfix-or-feature
+    ```
+
+7. Submit a pull request through the GitHub website.
+
+## Pull Request Guidelines
+
+Before you submit a pull request, check that it meets these guidelines:
+
+1. The pull request should include tests.
+2. If the pull request adds functionality, the docs should be updated. Put
+   your new functionality into a function with a docstring, and add the
+   feature to the list in `README.md` or `HISTORY.md`.
+3. The pull request should work for Python for the versions supported by the package (ideally, the three latest minor CPython versions).
+   Make sure that the tests pass for all supported Python versions.
+
+## Tips
+
+To run a subset of tests:
+```bash
+$ uv run pytest tests.test_gismap
+```

gismap-0.1.0/HISTORY.md

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+# History
+
+## Roadmap
+
+- Offline DBLP
+- Customized collaboration graphs
+  - Colors and size
+  - Groups
+
+## 0.1.0 (2025-07-24): First release
+
+- First release on PyPI.
+- Online DBLP and HAL DB implemented
+- Lab stuctures implemented
+- Early version of collaboration graph available

gismap-0.1.0/PKG-INFO

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+Metadata-Version: 2.4
+Name: gismap
+Version: 0.1.0
+Summary: GISMAP leverages DBLP and HAL databases to provide cartography tools for you and your lab.
+Project-URL: Repository, https://github.com/balouf/gismap
+Project-URL: Documentation, https://balouf.github.io/gismap
+Author-email: Fabien Mathieu <fabien.mathieu@normalesup.org>
+Maintainer-email: Fabien Mathieu <fabien.mathieu@normalesup.org>
+License-Expression: MIT
+License-File: AUTHORS.md
+Requires-Python: >=3.10
+Requires-Dist: bof>=0.3.5
+Requires-Dist: gismo>=0.5.2
+Description-Content-Type: text/markdown
+
+# Generic Information Search: Mapping and Analysis of Publications
+
+
+[![PyPI Status](https://img.shields.io/pypi/v/gismap.svg)](https://pypi.python.org/pypi/gismap)
+[![Build Status](https://github.com/balouf/gismap/actions/workflows/build.yml/badge.svg?branch=main)](https://github.com/balouf/gismap/actions?query=workflow%3Abuild)
+[![Documentation Status](https://github.com/balouf/gismap/actions/workflows/docs.yml/badge.svg?branch=main)](https://github.com/balouf/gismap/actions?query=workflow%3Adocs)
+[![License: MIT](https://img.shields.io/badge/license-MIT-yellow.svg)](https://opensource.org/licenses/MIT)
+[![Code Coverage](https://codecov.io/gh/balouf/gismap/branch/main/graphs/badge.svg)](https://codecov.io/gh/balouf/gismap/tree/main)
+
+GISMAP leverages DBLP and HAL databases to provide cartography tools for you and your lab.
+
+- Free software: MIT
+- Documentation: <https://balouf.github.io/gismap/>.
+- Github: <https://github.com/balouf/gismap>
+
+## Features
+
+- Can be used by all researchers in Computer Science (DBLP endpoint) or based in France (HAL endpoint).
+- Aggregate publications from multiple databases, including multiple author keys inside the same database.
+- Automatically keeps track of a Lab/Department members and publications.
+- Builds interactive collaboration graphs.
+
+## Quickstart
+
+Install GISMAP:
+
+```console
+$ pip install gismap
+```
+
+Use GISMAP to produce a collaboration graph (HTML):
+
+```pycon
+>>> from gismap.sources.hal import HAL
+>>> from gismap.lab import ListLab, lab2graph
+>>> lab = ListLab(["Mathilde Labbé", "Anne Reverseau", "David Martens", "Marcela Scibiorska", "Nathalie Grande"], dbs=[HAL])
+>>> lab.update_authors()
+>>> lab.update_publis()
+>>> collabs = lab2graph(lab)
+```
+
+## Credits
+
+This package was created with [Cookiecutter][CC] and the [Package Helper 3][PH3] project template.
+
+[CC]: <https://github.com/audreyr/cookiecutter>
+[PH3]: <https://balouf.github.io/package-helper-3/>

gismap-0.1.0/README.md

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+# Generic Information Search: Mapping and Analysis of Publications
+
+
+[![PyPI Status](https://img.shields.io/pypi/v/gismap.svg)](https://pypi.python.org/pypi/gismap)
+[![Build Status](https://github.com/balouf/gismap/actions/workflows/build.yml/badge.svg?branch=main)](https://github.com/balouf/gismap/actions?query=workflow%3Abuild)
+[![Documentation Status](https://github.com/balouf/gismap/actions/workflows/docs.yml/badge.svg?branch=main)](https://github.com/balouf/gismap/actions?query=workflow%3Adocs)
+[![License: MIT](https://img.shields.io/badge/license-MIT-yellow.svg)](https://opensource.org/licenses/MIT)
+[![Code Coverage](https://codecov.io/gh/balouf/gismap/branch/main/graphs/badge.svg)](https://codecov.io/gh/balouf/gismap/tree/main)
+
+GISMAP leverages DBLP and HAL databases to provide cartography tools for you and your lab.
+
+- Free software: MIT
+- Documentation: <https://balouf.github.io/gismap/>.
+- Github: <https://github.com/balouf/gismap>
+
+## Features
+
+- Can be used by all researchers in Computer Science (DBLP endpoint) or based in France (HAL endpoint).
+- Aggregate publications from multiple databases, including multiple author keys inside the same database.
+- Automatically keeps track of a Lab/Department members and publications.
+- Builds interactive collaboration graphs.
+
+## Quickstart
+
+Install GISMAP:
+
+```console
+$ pip install gismap
+```
+
+Use GISMAP to produce a collaboration graph (HTML):
+
+```pycon
+>>> from gismap.sources.hal import HAL
+>>> from gismap.lab import ListLab, lab2graph
+>>> lab = ListLab(["Mathilde Labbé", "Anne Reverseau", "David Martens", "Marcela Scibiorska", "Nathalie Grande"], dbs=[HAL])
+>>> lab.update_authors()
+>>> lab.update_publis()
+>>> collabs = lab2graph(lab)
+```
+
+## Credits
+
+This package was created with [Cookiecutter][CC] and the [Package Helper 3][PH3] project template.
+
+[CC]: <https://github.com/audreyr/cookiecutter>
+[PH3]: <https://balouf.github.io/package-helper-3/>

gismap-0.1.0/citation.cff

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+
+cff-version: 1.2.0
+title: Generic Information Search: Mapping and Analysis of Publications
+message: >-
+  If you use this software, please cite it using the
+  metadata from this file.
+type: software
+authors:
+  - family-names: Mathieu
+    given-names: Fabien
+    email: fabien.mathieu@normalesup.org
+repository-code: "https://github.com/balouf/gismap/"
+url: "https://balouf.github.io/gismap/"
+abstract: GISMAP leverages DBLP and HAL databases to provide cartography tools for you and your lab.
+license: MIT