ghga-transpiler 2.1.5__tar.gz → 2.2.1__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {ghga_transpiler-2.1.5/src/ghga_transpiler.egg-info → ghga_transpiler-2.2.1}/PKG-INFO +1 -1
- {ghga_transpiler-2.1.5 → ghga_transpiler-2.2.1}/pyproject.toml +1 -1
- {ghga_transpiler-2.1.5 → ghga_transpiler-2.2.1}/src/ghga_transpiler/__init__.py +1 -1
- ghga_transpiler-2.2.1/src/ghga_transpiler/configs/2.0.yaml +170 -0
- {ghga_transpiler-2.1.5 → ghga_transpiler-2.2.1/src/ghga_transpiler.egg-info}/PKG-INFO +1 -1
- {ghga_transpiler-2.1.5 → ghga_transpiler-2.2.1}/src/ghga_transpiler.egg-info/SOURCES.txt +1 -0
- {ghga_transpiler-2.1.5 → ghga_transpiler-2.2.1}/LICENSE +0 -0
- {ghga_transpiler-2.1.5 → ghga_transpiler-2.2.1}/README.md +0 -0
- {ghga_transpiler-2.1.5 → ghga_transpiler-2.2.1}/setup.cfg +0 -0
- {ghga_transpiler-2.1.5 → ghga_transpiler-2.2.1}/src/ghga_transpiler/__main__.py +0 -0
- {ghga_transpiler-2.1.5 → ghga_transpiler-2.2.1}/src/ghga_transpiler/cli.py +0 -0
- {ghga_transpiler-2.1.5 → ghga_transpiler-2.2.1}/src/ghga_transpiler/config/__init__.py +0 -0
- {ghga_transpiler-2.1.5 → ghga_transpiler-2.2.1}/src/ghga_transpiler/config/config.py +0 -0
- {ghga_transpiler-2.1.5 → ghga_transpiler-2.2.1}/src/ghga_transpiler/config/exceptions.py +0 -0
- {ghga_transpiler-2.1.5 → ghga_transpiler-2.2.1}/src/ghga_transpiler/configs/0.10.yaml +0 -0
- {ghga_transpiler-2.1.5 → ghga_transpiler-2.2.1}/src/ghga_transpiler/configs/1.0.yaml +0 -0
- {ghga_transpiler-2.1.5 → ghga_transpiler-2.2.1}/src/ghga_transpiler/configs/1.1.yaml +0 -0
- {ghga_transpiler-2.1.5 → ghga_transpiler-2.2.1}/src/ghga_transpiler/configs/__init__.py +0 -0
- {ghga_transpiler-2.1.5 → ghga_transpiler-2.2.1}/src/ghga_transpiler/core.py +0 -0
- {ghga_transpiler-2.1.5 → ghga_transpiler-2.2.1}/src/ghga_transpiler/io.py +0 -0
- {ghga_transpiler-2.1.5 → ghga_transpiler-2.2.1}/src/ghga_transpiler/transformations.py +0 -0
- {ghga_transpiler-2.1.5 → ghga_transpiler-2.2.1}/src/ghga_transpiler.egg-info/dependency_links.txt +0 -0
- {ghga_transpiler-2.1.5 → ghga_transpiler-2.2.1}/src/ghga_transpiler.egg-info/entry_points.txt +0 -0
- {ghga_transpiler-2.1.5 → ghga_transpiler-2.2.1}/src/ghga_transpiler.egg-info/requires.txt +0 -0
- {ghga_transpiler-2.1.5 → ghga_transpiler-2.2.1}/src/ghga_transpiler.egg-info/top_level.txt +0 -0
- {ghga_transpiler-2.1.5 → ghga_transpiler-2.2.1}/tests/test_convert_workbook.py +0 -0
- {ghga_transpiler-2.1.5 → ghga_transpiler-2.2.1}/tests/test_create_config.py +0 -0
- {ghga_transpiler-2.1.5 → ghga_transpiler-2.2.1}/tests/test_io.py +0 -0
- {ghga_transpiler-2.1.5 → ghga_transpiler-2.2.1}/tests/test_process_workbook.py +0 -0
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ghga_metadata_version: 2.0.0
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default_settings:
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header_row: 1
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start_row: 7
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start_column: 1
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transformations:
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attributes:
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!!python/object/apply:ghga_transpiler.transformations.to_attributes []
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format:
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!!python/object/apply:ghga_transpiler.transformations.to_snake_case []
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worksheets:
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- settings:
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end_column: 7
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name: analyses
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transformations:
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research_data_files:
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!!python/object/apply:ghga_transpiler.transformations.to_list []
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sheet_name: Analysis
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- settings:
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end_column: 11
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name: analysis_methods
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transformations:
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parameters:
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!!python/object/apply:ghga_transpiler.transformations.to_attributes []
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software_versions:
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!!python/object/apply:ghga_transpiler.transformations.to_attributes []
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sheet_name: AnalysisMethod
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- settings:
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end_column: 7
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name: analysis_method_supporting_files
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sheet_name: AnalysisMethodSupportingFile
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- settings:
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end_column: 7
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name: studies
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transformations:
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affiliations:
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!!python/object/apply:ghga_transpiler.transformations.to_list []
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attributes:
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!!python/object/apply:ghga_transpiler.transformations.to_attributes []
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types:
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!!python/object/apply:ghga_transpiler.transformations.to_snake_case_list []
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attributes:
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!!python/object/apply:ghga_transpiler.transformations.to_attributes []
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sheet_name: Study
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- settings:
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end_column: 10
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name: individuals
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transformations:
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phenotypic_features_terms:
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!!python/object/apply:ghga_transpiler.transformations.to_list []
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phenotypic_features_ids:
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!!python/object/apply:ghga_transpiler.transformations.to_list []
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diagnosis_ids:
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!!python/object/apply:ghga_transpiler.transformations.to_list []
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diagnosis_terms:
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!!python/object/apply:ghga_transpiler.transformations.to_list []
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sex:
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!!python/object/apply:ghga_transpiler.transformations.to_snake_case []
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ancestry_terms:
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!!python/object/apply:ghga_transpiler.transformations.to_list []
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ancestry_ids:
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!!python/object/apply:ghga_transpiler.transformations.to_list []
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sheet_name: Individual
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- settings:
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end_column: 7
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name: individual_supporting_files
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sheet_name: IndividualSupportingFile
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- settings:
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end_column: 21
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name: samples
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transformations:
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type:
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!!python/object/apply:ghga_transpiler.transformations.to_snake_case []
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storage:
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disease_or_healthy:
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!!python/object/apply:ghga_transpiler.transformations.to_snake_case []
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case_control_status:
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!!python/object/apply:ghga_transpiler.transformations.to_snake_case []
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xref: !!python/object/apply:ghga_transpiler.transformations.to_list []
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biospecimen_age_at_sampling:
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!!python/object/apply:ghga_transpiler.transformations.to_snake_case []
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biospecimen_vital_status_at_sampling:
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!!python/object/apply:ghga_transpiler.transformations.to_snake_case []
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biospecimen_isolation:
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!!python/object/apply:ghga_transpiler.transformations.to_snake_case []
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biospecimen_storage:
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!!python/object/apply:ghga_transpiler.transformations.to_snake_case []
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attributes:
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!!python/object/apply:ghga_transpiler.transformations.to_attributes []
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sheet_name: Sample
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- settings:
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end_column: 23
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name: experiment_methods
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transformations:
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library_type:
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!!python/object/apply:ghga_transpiler.transformations.to_snake_case []
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library_selection_methods:
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!!python/object/apply:ghga_transpiler.transformations.to_snake_case_list []
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library_preparation_kit_retail_name:
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!!python/object/apply:ghga_transpiler.transformations.to_snake_case []
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primer:
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end_bias:
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target_regions:
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!!python/object/apply:ghga_transpiler.transformations.to_list []
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rnaseq_strandedness:
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!!python/object/apply:ghga_transpiler.transformations.to_snake_case []
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instrument_model:
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sequencing_layout:
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flow_cell_type:
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sample_barcode_read:
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!!python/object/apply:ghga_transpiler.transformations.to_snake_case []
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sequencing_layout:
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attributes:
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!!python/object/apply:ghga_transpiler.transformations.to_attributes []
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sheet_name: ExperimentMethod
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- settings:
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end_column: 7
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name: experiment_method_supporting_files
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sheet_name: ExperimentMethodSupportingFile
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- settings:
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end_column: 8
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name: experiments
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sheet_name: Experiment
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- settings:
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end_column: 9
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name: research_data_files
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transformations:
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experiments:
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!!python/object/apply:ghga_transpiler.transformations.to_list []
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format:
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sheet_name: ResearchDataFile
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- settings:
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end_column: 7
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name: process_data_files
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sheet_name: ProcessDataFile
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- settings:
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end_column: 7
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name: datasets
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transformations:
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types: !!python/object/apply:ghga_transpiler.transformations.to_list []
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sheet_name: Dataset
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- settings:
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end_column: 11
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name: data_access_policies
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transformations:
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data_use_modifier_terms:
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data_use_permission_term:
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data_use_modifier_ids:
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!!python/object/apply:ghga_transpiler.transformations.to_list []
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sheet_name: DataAccessPolicy
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- settings:
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end_column: 4
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name: data_access_committees
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sheet_name: DataAccessCommittee
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- settings:
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end_column: 9
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name: publications
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transformations:
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xref: !!python/object/apply:ghga_transpiler.transformations.to_list []
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sheet_name: Publication
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src/ghga_transpiler/configs/0.10.yaml
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src/ghga_transpiler/configs/1.0.yaml
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src/ghga_transpiler/configs/1.1.yaml
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src/ghga_transpiler/configs/2.0.yaml
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src/ghga_transpiler/configs/__init__.py
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tests/test_convert_workbook.py
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tests/test_create_config.py
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{ghga_transpiler-2.1.5 → ghga_transpiler-2.2.1}/src/ghga_transpiler.egg-info/dependency_links.txt
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{ghga_transpiler-2.1.5 → ghga_transpiler-2.2.1}/src/ghga_transpiler.egg-info/entry_points.txt
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