geppetto-models 1.8.0__tar.gz

geppetto_models-1.8.0/LICENSE

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geppetto_models-1.8.0/MANIFEST.in

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+# The sdist carries the package, its licence and its README only. Tests and
+# their fixtures stay in the repository.
+include LICENSE NOTICE README.md
+prune tests
+global-exclude *.py[cod] __pycache__

geppetto_models-1.8.0/NOTICE

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+geppetto-models
+Copyright 2026 Rutgers, The State University of New Jersey
+Copyright 2026 Geppetto Ecosystem contributors
+
+This material is based upon work supported by the U.S. National Science
+Foundation under the PCL Test Bed Cooperative Agreement No. 2607521.

geppetto_models-1.8.0/PKG-INFO

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+Metadata-Version: 2.4
+Name: geppetto-models
+Version: 1.8.0
+Summary: Shared data contracts for the Geppetto autonomous-lab ecosystem, including the PCL Agent Interoperability Profile
+Author: Geppetto Ecosystem contributors
+License-Expression: Apache-2.0
+Keywords: cloud lab,self-driving lab,a2a,agent interoperability,pydantic
+Classifier: Development Status :: 4 - Beta
+Classifier: Intended Audience :: Science/Research
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Topic :: Scientific/Engineering
+Classifier: Typing :: Typed
+Requires-Python: >=3.11
+Description-Content-Type: text/markdown
+License-File: LICENSE
+License-File: NOTICE
+Requires-Dist: pydantic>=2.0
+Requires-Dist: jsonschema>=4.21
+Provides-Extra: dev
+Requires-Dist: pytest>=7.0; extra == "dev"
+Dynamic: license-file
+
+# geppetto-models
+
+Shared data contracts for the Geppetto autonomous-lab ecosystem: the
+Design-Build-Test-Learn platform behind COAST, a node of the NSF Programmable
+Cloud Laboratories (PCL) Test Bed. The package contains Pydantic models only.
+Its only dependencies are `pydantic` and `jsonschema`.
+
+```bash
+pip install geppetto-models
+```
+
+## PCL Agent Interoperability Profile
+
+`geppetto_models.agent_profile` defines the messages an orchestrator exchanges
+with a **specialist agent** that another lab runs. It is profile version
+`pcl-agent-profile/v0.1` (`PROFILE_VERSION`), carried over A2A (Agent2Agent).
+
+| Role | Receives | Returns |
+|---|---|---|
+| Advisor: asked about an experiment's adaptive parameters before the next design | `ConsultRequest` | `Advisory` |
+| Analyst: handed one iteration's raw instrument files for one technique (NMR, DSC, ...) | `AnalysisTask` (data passed by `DataRef`: a presigned URL plus a SHA-256) | `Analysis` |
+
+The orchestrator records each reply with the fields it is the authority on.
+These are the agent id from its registry, timestamps, input hashes and cost.
+The recorded forms are `DomainAdvisory`, `DelegatedAnalysis` and `Provenance`.
+
+`json_schemas()` returns the JSON Schema of each wire message, for agents
+written in languages other than Python.
+
+`geppetto_models.agent_registry` defines the agent registry record:
+- `AgentDefinition` is what a lab submits, and `AgentRecord` is the stored entry with its approval state.
+- `card_pin_sha256` is the hash an approval pins the agent's Agent Card to.
+- `project_specialist_ids` reads a project's list of opted-in agents.
+
+## Other modules
+
+| Module | Contents |
+|---|---|
+| `clap` | `CLAPStep`, `CLAPRunRequest`, `CLAPExperimentConfig`: multi-step protocols sent to a cloud-lab node |
+| `lab` | The cloud-lab node registry record and its Capability Sets (`python -m geppetto_models.lab validate lab.json`) |
+| `pinocchio` | Orchestrator configuration: hypotheses, adaptive parameters, success criteria |
+| `events` | EventBridge event payloads |
+| `experiment` | Campaign state and per-iteration results |
+| `pinocchio_outputs` | `AnalysisResult` / `LearnResult`: the typed per-iteration analysis and learning documents |
+| `drs` | Diagnostic Reasoning Subsystem results |
+| `testing.spectramax` | Builders for SpectraMax plate-reader exports, for tests |
+
+## Licence
+
+Apache-2.0. See `LICENSE` and `NOTICE`.
+
+## Acknowledgement
+
+This material is based upon work supported by the U.S. National Science
+Foundation under the PCL Test Bed Cooperative Agreement No. 2607521.

geppetto_models-1.8.0/README.md

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+# geppetto-models
+
+Shared data contracts for the Geppetto autonomous-lab ecosystem: the
+Design-Build-Test-Learn platform behind COAST, a node of the NSF Programmable
+Cloud Laboratories (PCL) Test Bed. The package contains Pydantic models only.
+Its only dependencies are `pydantic` and `jsonschema`.
+
+```bash
+pip install geppetto-models
+```
+
+## PCL Agent Interoperability Profile
+
+`geppetto_models.agent_profile` defines the messages an orchestrator exchanges
+with a **specialist agent** that another lab runs. It is profile version
+`pcl-agent-profile/v0.1` (`PROFILE_VERSION`), carried over A2A (Agent2Agent).
+
+| Role | Receives | Returns |
+|---|---|---|
+| Advisor: asked about an experiment's adaptive parameters before the next design | `ConsultRequest` | `Advisory` |
+| Analyst: handed one iteration's raw instrument files for one technique (NMR, DSC, ...) | `AnalysisTask` (data passed by `DataRef`: a presigned URL plus a SHA-256) | `Analysis` |
+
+The orchestrator records each reply with the fields it is the authority on.
+These are the agent id from its registry, timestamps, input hashes and cost.
+The recorded forms are `DomainAdvisory`, `DelegatedAnalysis` and `Provenance`.
+
+`json_schemas()` returns the JSON Schema of each wire message, for agents
+written in languages other than Python.
+
+`geppetto_models.agent_registry` defines the agent registry record:
+- `AgentDefinition` is what a lab submits, and `AgentRecord` is the stored entry with its approval state.
+- `card_pin_sha256` is the hash an approval pins the agent's Agent Card to.
+- `project_specialist_ids` reads a project's list of opted-in agents.
+
+## Other modules
+
+| Module | Contents |
+|---|---|
+| `clap` | `CLAPStep`, `CLAPRunRequest`, `CLAPExperimentConfig`: multi-step protocols sent to a cloud-lab node |
+| `lab` | The cloud-lab node registry record and its Capability Sets (`python -m geppetto_models.lab validate lab.json`) |
+| `pinocchio` | Orchestrator configuration: hypotheses, adaptive parameters, success criteria |
+| `events` | EventBridge event payloads |
+| `experiment` | Campaign state and per-iteration results |
+| `pinocchio_outputs` | `AnalysisResult` / `LearnResult`: the typed per-iteration analysis and learning documents |
+| `drs` | Diagnostic Reasoning Subsystem results |
+| `testing.spectramax` | Builders for SpectraMax plate-reader exports, for tests |
+
+## Licence
+
+Apache-2.0. See `LICENSE` and `NOTICE`.
+
+## Acknowledgement
+
+This material is based upon work supported by the U.S. National Science
+Foundation under the PCL Test Bed Cooperative Agreement No. 2607521.

geppetto_models-1.8.0/geppetto_models/__init__.py

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+from geppetto_models.clap import CLAPStep, CLAPRunRequest, CLAPNodeSelection, CLAPExperimentConfig
+from geppetto_models.pinocchio import (
+    SuccessCriteria, Hypothesis, PinocchioMode, AdaptationMethod,
+    AdaptiveParameter, PinocchioConfig,
+)
+from geppetto_models.events import (
+    ProjectContext, ExperimentSubmittedDetail, CLAPRunStatusDetail,
+    PinocchioCycleCompletedDetail, FeedbackSubmittedDetail,
+)
+from geppetto_models.experiment import ExperimentStatus, IterationResult, ExperimentState
+from geppetto_models.drs import (
+    ConstraintViolation, ProtocolAnalysisResult, DRSHypothesis,
+    DRSCritique, DRSTournamentResult, DRSRemedy, DRSResult,
+)
+from geppetto_models.pinocchio_outputs import (
+    AnalysisResult, LearnResult, ModelPerformance, QualityAssessment,
+    SuccessCriterionCheck, format_validation_error,
+)
+from geppetto_models.agent_profile import (
+    PROFILE_VERSION, Bounds, ConsultRequest, Advisory, DomainAdvisory,
+    DataRef, AnalysisTask, AgentProvenance, Provenance, Analysis,
+    DelegatedAnalysis, json_schemas,
+)
+from geppetto_models.agent_registry import (
+    AgentStatus, AgentDefinition, AgentCheck, AgentRecord, is_admitted,
+    project_specialist_ids, card_pin_sha256, PROJECT_SPECIALISTS_KEY,
+)
+# geppetto_models.lab (the clap-registry record) is imported from its module,
+# not re-exported here, so `python -m geppetto_models.lab` runs cleanly.

geppetto_models-1.8.0/geppetto_models/agent_profile.py

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+"""The PCL Agent Interoperability Profile: what crosses the wire between an
+orchestrator (Pinocchio) and a specialist agent another lab runs.
+
+There are two specialist roles (``specs/AGENT_INTEROP_PLAN.md`` and
+``specs/AGENT_REGISTRY_HANDOFF.md`` in ``geppetto-ecosystem``):
+
+- An **advisor** is asked a question about the experiment's adaptive
+  parameters before the next design: it receives a :class:`ConsultRequest` and
+  replies with an :class:`Advisory`.
+- An **analyst** is handed one iteration's raw instrument files for one
+  measurement technique (NMR, DSC, SAXS, ...) instead of the orchestrator
+  parsing them: it receives an :class:`AnalysisTask` and replies with an
+  :class:`Analysis`.
+
+Each reply has a caller-side counterpart that adds what the orchestrator, not
+the agent, is the authority on: :class:`DomainAdvisory` and
+:class:`DelegatedAnalysis` add the ``agent_id`` (from the registry, never the
+agent's self-report), and :class:`Provenance` completes the agent's
+:class:`AgentProvenance` with timestamps, input hashes, the task id and cost.
+
+Rules:
+
+- **Data is referenced, never copied.** :class:`DataRef` carries a URI (a
+  presigned, expiring, read-only S3 URL in production; ``file://`` offline)
+  plus a checksum, so an agent at another institution fetches the bytes itself
+  without anyone sharing bucket credentials.
+- **Every delegated result carries provenance**, which is what makes it
+  reproducible and auditable after the fact.
+- **Replies are validated before any model sees them.** A reply that fails
+  validation is a dropped specialist, never a failed cycle.
+- **Unknown keys are ignored** (pydantic's default), so an agent built against a
+  later minor profile can still be read.
+
+The profile is versioned separately from this package (:data:`PROFILE_VERSION`)
+because it is drafted jointly with other PCL nodes and changes on its own
+schedule. Labs not writing Python implement against :func:`json_schemas`.
+Helpers that do I/O (fetching a :class:`DataRef`, serving an agent) live in
+``specialist_kit``, not here.
+"""
+
+from __future__ import annotations
+
+from typing import Any, Literal
+
+from pydantic import BaseModel, Field
+
+# Shared with pinocchio_outputs (which imports it from here, so this module
+# does not depend on that one).
+Confidence = Literal["low", "medium", "high"]
+CONFIDENCE_LEVELS: tuple[str, ...] = ("low", "medium", "high")
+
+# Matches the month-3 milestone in AGENT_INTEROP_PLAN.md ("Profile v0.1
+# drafted jointly"). Reported on every task and every provenance record.
+PROFILE_VERSION = "pcl-agent-profile/v0.1"
+
+
+# ---------------------------------------------------------------------------
+# Advisor role
+# ---------------------------------------------------------------------------
+
+
+class Bounds(BaseModel):
+    """One adaptive parameter's current value and the range it may move in."""
+
+    current: float | None = None
+    min: float | None = None
+    max: float | None = None
+
+
+class ConsultRequest(BaseModel):
+    """What an advisor is asked: a question plus the parameter context.
+
+    ``parameters`` carries every adaptive parameter in the experiment, not only
+    the ones the question names, so an advisor can reason about the whole
+    picture. ``recommended_parameters`` is what the Learn phase proposed, which
+    is what the advisor is being asked to sanity-check.
+    """
+
+    question: str = ""
+    parameters: dict[str, Bounds] = Field(default_factory=dict)
+    recommended_parameters: dict[str, float] = Field(default_factory=dict)
+
+
+class Advisory(BaseModel):
+    """What an advisor returns.
+
+    ``constraints`` are hard bounds the design must respect
+    (``{"temperature_C": {"max": 65}}``); ``recommendations`` are softer
+    suggested values. ``rationale`` is required because an advisory with no
+    reasoning is not actionable: it is what a scientist reads to decide whether
+    to believe the constraint. ``confidence`` is the agent's own, separate from
+    the registry's ``trust`` rating of the agent.
+    """
+
+    constraints: dict[str, dict[str, float]] = Field(default_factory=dict)
+    recommendations: dict[str, float] = Field(default_factory=dict)
+    rationale: str
+    confidence: Confidence = "medium"
+
+
+class DomainAdvisory(Advisory):
+    """An :class:`Advisory` as the orchestrator records it
+    (``advisory_iter{N}.json``): ``agent_id`` is stamped from the registry."""
+
+    agent_id: str
+
+
+# ---------------------------------------------------------------------------
+# Analyst role
+# ---------------------------------------------------------------------------
+
+
+class DataRef(BaseModel):
+    """One raw data file, passed by reference.
+
+    ``sha256`` lets the agent verify it fetched the bytes the orchestrator
+    meant, and is the same value that goes into :attr:`Provenance.input_hashes`,
+    which ties a result to its exact input after the fact.
+    """
+
+    name: str = Field(description="The file's path relative to the iteration's working directory.")
+    uri: str = Field(description="Where the agent fetches it (presigned https, or file://).")
+    media_type: str = Field(default="application/octet-stream")
+    sha256: str = Field(default="", description="Checksum of the referenced bytes.")
+    size_bytes: int = Field(default=0, ge=0)
+
+
+class AnalysisTask(BaseModel):
+    """What an analyst is asked to do.
+
+    ``technique`` is the measurement technique the registry matched on, and is
+    the deterministic basis for selection: no model chooses it.
+    ``protocol_context`` carries the parameters an analysis needs but cannot
+    infer from the raw file (NMR integration regions, an internal standard's
+    concentration). ``requested_outputs`` names what the caller wants back.
+    """
+
+    profile_version: str = Field(default=PROFILE_VERSION)
+    task_id: str = Field(description="Unique per delegated call; echoed in the provenance record.")
+    technique: str = Field(description="The measurement technique, e.g. nmr, dsc, saxs.")
+    iteration: int = Field(ge=0)
+    data: list[DataRef] = Field(default_factory=list)
+    protocol_context: dict[str, Any] = Field(
+        default_factory=dict,
+        description="Analysis parameters from the protocol (e.g. NMR integration_regions).",
+    )
+    requested_outputs: list[str] = Field(default_factory=list)
+
+
+class AgentProvenance(BaseModel):
+    """The part of the provenance record only the agent knows. An agent may
+    set any of these or omit the record entirely."""
+
+    agent_version: str = Field(default="")
+    model_version: str = Field(default="", description="The model the agent used, if any.")
+    parameters: dict[str, Any] = Field(default_factory=dict, description="Parameters the analysis ran with.")
+    confidence: Confidence = "medium"
+
+
+class Provenance(AgentProvenance):
+    """The full provenance record on a delegated result.
+
+    The orchestrator fills every field it is the authority on: ``agent_id``
+    from the registry, the timestamps, the task id, the input hashes, and
+    ``cost_usd`` from the registry's declared ``max_cost_usd`` (never from what
+    the agent says about itself).
+    """
+
+    agent_id: str = Field(
+        default="",
+        description="Stamped from the registry, not taken from the agent's self-report.",
+    )
+    profile_version: str = Field(default=PROFILE_VERSION)
+    task_id: str = Field(default="")
+    input_hashes: dict[str, str] = Field(
+        default_factory=dict, description="Mapping of each input file name to its sha256."
+    )
+    requested_at: str = Field(default="", description="ISO-8601, set by the orchestrator.")
+    completed_at: str = Field(default="", description="ISO-8601, set by the orchestrator.")
+    cost_usd: float = Field(default=0.0, ge=0.0)
+
+
+class Analysis(BaseModel):
+    """What an analyst returns.
+
+    ``results`` is an open dict because the agent knows its technique's outputs
+    better than the orchestrator does (an NMR agent returns conversion and
+    composition, a DSC agent Tg / Tm / crystallinity). ``units`` keeps those
+    numbers interpretable, and ``warnings`` lets an agent flag a partial or
+    low-quality analysis without failing the call.
+    """
+
+    results: dict[str, Any] = Field(default_factory=dict, description="The technique's outputs.")
+    units: dict[str, str] = Field(default_factory=dict)
+    summary: str = Field(default="", description="One or two sentences for the Test phase to read.")
+    warnings: list[str] = Field(default_factory=list)
+    provenance: AgentProvenance | None = None
+
+
+class DelegatedAnalysis(Analysis):
+    """An :class:`Analysis` as the orchestrator records it
+    (``delegations/iter{N}/{agent_id}.json``, and
+    ``AnalysisResult.delegated_analyses``)."""
+
+    agent_id: str
+    technique: str
+    provenance: Provenance | None = None
+
+
+# ---------------------------------------------------------------------------
+# JSON Schema, for agents not written in Python
+# ---------------------------------------------------------------------------
+
+#: The models an agent implements against, by schema file name.
+WIRE_MODELS: dict[str, type[BaseModel]] = {
+    "consult_request.schema.json": ConsultRequest,
+    "advisory.schema.json": Advisory,
+    "analysis_task.schema.json": AnalysisTask,
+    "analysis.schema.json": Analysis,
+}
+
+
+def json_schemas() -> dict[str, dict[str, Any]]:
+    """The JSON Schema of every wire model, keyed by its schema file name."""
+    return {filename: model.model_json_schema() for filename, model in WIRE_MODELS.items()}