geoseeq 0.6.9__tar.gz → 0.6.10__tar.gz

Sign up to get free protection for your applications and to get access to all the features.
Files changed (99) hide show
  1. {geoseeq-0.6.9 → geoseeq-0.6.10}/PKG-INFO +1 -1
  2. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/cli/main.py +1 -1
  3. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/sample.py +11 -12
  4. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq.egg-info/PKG-INFO +1 -1
  5. {geoseeq-0.6.9 → geoseeq-0.6.10}/pyproject.toml +1 -1
  6. {geoseeq-0.6.9 → geoseeq-0.6.10}/LICENSE +0 -0
  7. {geoseeq-0.6.9 → geoseeq-0.6.10}/README.md +0 -0
  8. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/__init__.py +0 -0
  9. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/app.py +0 -0
  10. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/blob_constructors.py +0 -0
  11. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/bulk_creators.py +0 -0
  12. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/cli/__init__.py +0 -0
  13. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/cli/constants.py +0 -0
  14. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/cli/copy.py +0 -0
  15. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/cli/detail.py +0 -0
  16. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/cli/download.py +0 -0
  17. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/cli/fastq_utils.py +0 -0
  18. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/cli/get_eula.py +0 -0
  19. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/cli/manage.py +0 -0
  20. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/cli/progress_bar.py +0 -0
  21. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/cli/project.py +0 -0
  22. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/cli/raw.py +0 -0
  23. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/cli/run.py +0 -0
  24. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/cli/search.py +0 -0
  25. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/cli/shared_params/__init__.py +0 -0
  26. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/cli/shared_params/common_state.py +0 -0
  27. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/cli/shared_params/config.py +0 -0
  28. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/cli/shared_params/id_handlers.py +0 -0
  29. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/cli/shared_params/obj_getters.py +0 -0
  30. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/cli/shared_params/opts_and_args.py +0 -0
  31. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/cli/upload/__init__.py +0 -0
  32. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/cli/upload/upload.py +0 -0
  33. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/cli/upload/upload_advanced.py +0 -0
  34. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/cli/upload/upload_reads.py +0 -0
  35. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/cli/user.py +0 -0
  36. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/cli/utils.py +0 -0
  37. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/cli/view.py +0 -0
  38. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/constants.py +0 -0
  39. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/contrib/__init__.py +0 -0
  40. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/contrib/ncbi/__init__.py +0 -0
  41. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/contrib/ncbi/api.py +0 -0
  42. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/contrib/ncbi/bioproject.py +0 -0
  43. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/contrib/ncbi/cli.py +0 -0
  44. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/contrib/ncbi/setup_logging.py +0 -0
  45. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/file_system_cache.py +0 -0
  46. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/id_constructors/__init__.py +0 -0
  47. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/id_constructors/from_blobs.py +0 -0
  48. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/id_constructors/from_ids.py +0 -0
  49. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/id_constructors/from_names.py +0 -0
  50. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/id_constructors/from_uuids.py +0 -0
  51. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/id_constructors/resolvers.py +0 -0
  52. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/id_constructors/utils.py +0 -0
  53. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/knex.py +0 -0
  54. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/organization.py +0 -0
  55. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/pipeline.py +0 -0
  56. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/plotting/__init__.py +0 -0
  57. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/plotting/constants.py +0 -0
  58. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/plotting/highcharts.py +0 -0
  59. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/plotting/map/__init__.py +0 -0
  60. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/plotting/map/base_layer.py +0 -0
  61. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/plotting/map/map.py +0 -0
  62. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/plotting/map/overlay.py +0 -0
  63. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/plotting/selectable.py +0 -0
  64. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/project.py +0 -0
  65. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/remote_object.py +0 -0
  66. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/result/__init__.py +0 -0
  67. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/result/bioinfo.py +0 -0
  68. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/result/file_chunker.py +0 -0
  69. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/result/file_download.py +0 -0
  70. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/result/file_upload.py +0 -0
  71. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/result/result_file.py +0 -0
  72. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/result/result_folder.py +0 -0
  73. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/result/resumable_download_tracker.py +0 -0
  74. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/result/resumable_upload_tracker.py +0 -0
  75. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/result/utils.py +0 -0
  76. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/search.py +0 -0
  77. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/upload_download_manager.py +0 -0
  78. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/user.py +0 -0
  79. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/utils.py +0 -0
  80. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/vc/__init__.py +0 -0
  81. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/vc/checksum.py +0 -0
  82. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/vc/cli.py +0 -0
  83. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/vc/clone.py +0 -0
  84. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/vc/constants.py +0 -0
  85. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/vc/vc_cache.py +0 -0
  86. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/vc/vc_dir.py +0 -0
  87. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/vc/vc_sample.py +0 -0
  88. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/vc/vc_stub.py +0 -0
  89. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq/work_orders.py +0 -0
  90. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq.egg-info/SOURCES.txt +0 -0
  91. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq.egg-info/dependency_links.txt +0 -0
  92. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq.egg-info/entry_points.txt +0 -0
  93. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq.egg-info/requires.txt +0 -0
  94. {geoseeq-0.6.9 → geoseeq-0.6.10}/geoseeq.egg-info/top_level.txt +0 -0
  95. {geoseeq-0.6.9 → geoseeq-0.6.10}/setup.cfg +0 -0
  96. {geoseeq-0.6.9 → geoseeq-0.6.10}/setup.py +0 -0
  97. {geoseeq-0.6.9 → geoseeq-0.6.10}/tests/__init__.py +0 -0
  98. {geoseeq-0.6.9 → geoseeq-0.6.10}/tests/test_api_client.py +0 -0
  99. {geoseeq-0.6.9 → geoseeq-0.6.10}/tests/test_plotting.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: geoseeq
3
- Version: 0.6.9
3
+ Version: 0.6.10
4
4
  Summary: GeoSeeq command line tools and python API
5
5
  Author: David C. Danko
6
6
  Author-email: "David C. Danko" <dcdanko@biotia.io>
@@ -54,7 +54,7 @@ def version():
54
54
  Use of this tool implies acceptance of the GeoSeeq End User License Agreement.
55
55
  Run `geoseeq eula show` to view the EULA.
56
56
  """
57
- click.echo('0.6.9') # remember to update pyproject.toml
57
+ click.echo('0.6.10') # remember to update pyproject.toml
58
58
 
59
59
 
60
60
  @main.group('advanced')
@@ -205,18 +205,17 @@ class Sample(RemoteObject):
205
205
  files[read_type] = {}
206
206
  for folder_name, file_grns in folders.items():
207
207
  files[read_type][folder_name] = []
208
- for file_grn in file_grns:
209
- if read_type in ["short_read::paired_end"]:
210
- files[read_type][folder_name].append(
211
- [
212
- self._grn_to_file(file_grn[0]),
213
- self._grn_to_file(file_grn[1]),
214
- ]
215
- )
216
- else:
217
- files[read_type][folder_name].append(
218
- self._grn_to_file(file_grn[0])
219
- )
208
+ if read_type in ["short_read::paired_end"]:
209
+ files[read_type][folder_name].append(
210
+ [
211
+ self._grn_to_file(file_grns[0]),
212
+ self._grn_to_file(file_grns[1]),
213
+ ]
214
+ )
215
+ else:
216
+ files[read_type][folder_name].append(
217
+ self._grn_to_file(file_grns[0])
218
+ )
220
219
  return files
221
220
 
222
221
  def get_one_fasta(self):
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: geoseeq
3
- Version: 0.6.9
3
+ Version: 0.6.10
4
4
  Summary: GeoSeeq command line tools and python API
5
5
  Author: David C. Danko
6
6
  Author-email: "David C. Danko" <dcdanko@biotia.io>
@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
4
4
 
5
5
  [project]
6
6
  name = "geoseeq"
7
- version = "0.6.9"
7
+ version = "0.6.10"
8
8
  authors = [
9
9
  { name="David C. Danko", email="dcdanko@biotia.io" },
10
10
  ]
File without changes
File without changes
File without changes
File without changes
File without changes
File without changes
File without changes
File without changes
File without changes
File without changes
File without changes
File without changes
File without changes
File without changes
File without changes
File without changes
File without changes
File without changes
File without changes
File without changes
File without changes
File without changes
File without changes
File without changes
File without changes
File without changes
File without changes
File without changes
File without changes
File without changes
File without changes
File without changes
File without changes