geoseeq 0.6.2__tar.gz → 0.6.3__tar.gz

{geoseeq-0.6.2 → geoseeq-0.6.3}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: geoseeq
-Version: 0.6.2
+Version: 0.6.3
 Summary: GeoSeeq command line tools and python API
 Author: David C. Danko
 Author-email: "David C. Danko" <dcdanko@biotia.io>
@@ -12,6 +12,11 @@ Classifier: Operating System :: OS Independent
 Requires-Python: >=3.8
 Description-Content-Type: text/markdown
 License-File: LICENSE
+Requires-Dist: requests
+Requires-Dist: click
+Requires-Dist: pandas
+Requires-Dist: biopython
+Requires-Dist: tqdm
 
 # Geoseeq API Client
 

{geoseeq-0.6.2 → geoseeq-0.6.3}/geoseeq/cli/download.py

@@ -160,8 +160,8 @@ def cli_download_files(
 
     \b
     # Download assembly contigs from two samples in the MetaSUB Consortium CSD16 project
-    $ geoseeq download files "MetaSUB Consortium/CSD16" `# specify the project` \ 
-        haib17CEM4890_H2NYMCCXY_SL254769 haib17CEM4890_H2NYMCCXY_SL254773 `# specify the samples by name` \ 
+    $ geoseeq download files "MetaSUB Consortium/CSD16" `# specify the project` \\ 
+        haib17CEM4890_H2NYMCCXY_SL254769 haib17CEM4890_H2NYMCCXY_SL254773 `# specify the samples by name` \\ 
         --folder-type sample --extension '.contigs.fasta' # filter for contig files
 
     ---

{geoseeq-0.6.2 → geoseeq-0.6.3}/geoseeq/cli/main.py

@@ -26,7 +26,7 @@ handler.setFormatter(logging.Formatter('[%(levelname)s] %(name)s :: %(message)s'
 logger.addHandler(handler)
 
 
-@click.group()
+@click.group(context_settings={'show_default': True})
 def main():
     """Command line interface for the GeoSeeq API.
     
@@ -54,7 +54,7 @@ def version():
     Use of this tool implies acceptance of the GeoSeeq End User License Agreement.
     Run `geoseeq eula show` to view the EULA.
     """
-    click.echo('0.6.2')  # remember to update setup
+    click.echo('0.6.3')  # remember to update setup
 
 
 @main.group('advanced')

{geoseeq-0.6.2 → geoseeq-0.6.3}/geoseeq/result/file_download.py

@@ -6,6 +6,7 @@ import os
 from os.path import basename, getsize, join, isfile, getmtime, dirname
 from pathlib import Path
 from tempfile import NamedTemporaryFile
+from math import ceil
 
 from geoseeq.utils import download_ftp
 from geoseeq.constants import FIVE_MB
@@ -43,7 +44,7 @@ def _download_resumable(response, filename, total_size_in_bytes, progress_tracke
     target_id = url_to_id(response.url)
     tracker = ResumableDownloadTracker(chunk_size, target_id, filename)
     if not tracker.download_started: tracker.start_download(response.url)
-    n_chunks = total_size_in_bytes // chunk_size
+    n_chunks = ceil(total_size_in_bytes / chunk_size)
     for i in range(n_chunks):
         bytes_start, bytes_end = i * chunk_size, min((i + 1) * chunk_size - 1, total_size_in_bytes - 1)
         if tracker.part_has_been_downloaded(i):

{geoseeq-0.6.2 → geoseeq-0.6.3}/geoseeq.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: geoseeq
-Version: 0.6.2
+Version: 0.6.3
 Summary: GeoSeeq command line tools and python API
 Author: David C. Danko
 Author-email: "David C. Danko" <dcdanko@biotia.io>
@@ -12,6 +12,11 @@ Classifier: Operating System :: OS Independent
 Requires-Python: >=3.8
 Description-Content-Type: text/markdown
 License-File: LICENSE
+Requires-Dist: requests
+Requires-Dist: click
+Requires-Dist: pandas
+Requires-Dist: biopython
+Requires-Dist: tqdm
 
 # Geoseeq API Client
 

{geoseeq-0.6.2 → geoseeq-0.6.3}/geoseeq.egg-info/SOURCES.txt

@@ -23,6 +23,7 @@ geoseeq.egg-info/PKG-INFO
 geoseeq.egg-info/SOURCES.txt
 geoseeq.egg-info/dependency_links.txt
 geoseeq.egg-info/entry_points.txt
+geoseeq.egg-info/requires.txt
 geoseeq.egg-info/top_level.txt
 geoseeq/cli/__init__.py
 geoseeq/cli/constants.py

geoseeq-0.6.3/geoseeq.egg-info/requires.txt

@@ -0,0 +1,5 @@
+requests
+click
+pandas
+biopython
+tqdm

{geoseeq-0.6.2 → geoseeq-0.6.3}/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "geoseeq"
-version = "0.6.2"
+version = "0.6.3"
 authors = [
   { name="David C. Danko", email="dcdanko@biotia.io" },
 ]
@@ -16,10 +16,17 @@ classifiers = [
     "License :: OSI Approved :: MIT License",
     "Operating System :: OS Independent",
 ]
+dependencies = [
+    "requests",
+    "click",
+    "pandas",
+    "biopython",
+    "tqdm",
+]
 
 [project.urls]
 Homepage = "https://github.com/biotia/geoseeq_api_client"
 Issues = "https://github.com/biotia/geoseeq_api_client/issues"
 
 [project.scripts]
-geoseeq = "geoseeq.cli:main"
+geoseeq = "geoseeq.cli:main"