geoseeq 0.6.10__tar.gz → 0.6.11__tar.gz
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- {geoseeq-0.6.10 → geoseeq-0.6.11}/PKG-INFO +3 -2
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/cli/main.py +1 -1
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/sample.py +3 -2
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq.egg-info/PKG-INFO +3 -2
- {geoseeq-0.6.10 → geoseeq-0.6.11}/pyproject.toml +1 -1
- {geoseeq-0.6.10 → geoseeq-0.6.11}/LICENSE +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/README.md +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/__init__.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/app.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/blob_constructors.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/bulk_creators.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/cli/__init__.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/cli/constants.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/cli/copy.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/cli/detail.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/cli/download.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/cli/fastq_utils.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/cli/get_eula.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/cli/manage.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/cli/progress_bar.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/cli/project.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/cli/raw.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/cli/run.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/cli/search.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/cli/shared_params/__init__.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/cli/shared_params/common_state.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/cli/shared_params/config.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/cli/shared_params/id_handlers.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/cli/shared_params/obj_getters.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/cli/shared_params/opts_and_args.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/cli/upload/__init__.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/cli/upload/upload.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/cli/upload/upload_advanced.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/cli/upload/upload_reads.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/cli/user.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/cli/utils.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/cli/view.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/constants.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/contrib/__init__.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/contrib/ncbi/__init__.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/contrib/ncbi/api.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/contrib/ncbi/bioproject.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/contrib/ncbi/cli.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/contrib/ncbi/setup_logging.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/file_system_cache.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/id_constructors/__init__.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/id_constructors/from_blobs.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/id_constructors/from_ids.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/id_constructors/from_names.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/id_constructors/from_uuids.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/id_constructors/resolvers.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/id_constructors/utils.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/knex.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/organization.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/pipeline.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/plotting/__init__.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/plotting/constants.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/plotting/highcharts.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/plotting/map/__init__.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/plotting/map/base_layer.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/plotting/map/map.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/plotting/map/overlay.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/plotting/selectable.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/project.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/remote_object.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/result/__init__.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/result/bioinfo.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/result/file_chunker.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/result/file_download.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/result/file_upload.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/result/result_file.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/result/result_folder.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/result/resumable_download_tracker.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/result/resumable_upload_tracker.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/result/utils.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/search.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/upload_download_manager.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/user.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/utils.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/vc/__init__.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/vc/checksum.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/vc/cli.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/vc/clone.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/vc/constants.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/vc/vc_cache.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/vc/vc_dir.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/vc/vc_sample.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/vc/vc_stub.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq/work_orders.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq.egg-info/SOURCES.txt +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq.egg-info/dependency_links.txt +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq.egg-info/entry_points.txt +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq.egg-info/requires.txt +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/geoseeq.egg-info/top_level.txt +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/setup.cfg +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/setup.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/tests/__init__.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/tests/test_api_client.py +0 -0
- {geoseeq-0.6.10 → geoseeq-0.6.11}/tests/test_plotting.py +0 -0
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Metadata-Version: 2.
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Metadata-Version: 2.2
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Name: geoseeq
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Version: 0.6.
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Version: 0.6.11
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Summary: GeoSeeq command line tools and python API
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Author: David C. Danko
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Author-email: "David C. Danko" <dcdanko@biotia.io>
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Requires-Dist: pandas
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# Geoseeq API Client
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Use of this tool implies acceptance of the GeoSeeq End User License Agreement.
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Run `geoseeq eula show` to view the EULA.
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"""
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click.echo('0.6.
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click.echo('0.6.11') # remember to update pyproject.toml
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@main.group('advanced')
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"""
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url = f"data/samples/{self.uuid}/all-fastqs"
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blob = self.knex.get(url)
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print(blob)
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files = {}
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for read_type, folders in blob.items():
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files[read_type] = {}
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if read_type in ["short_read::paired_end"]:
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files[read_type][folder_name].append(
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[
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self._grn_to_file(file_grns[0]),
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self._grn_to_file(file_grns[1]),
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self._grn_to_file(file_grns[0][0]),
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self._grn_to_file(file_grns[0][1]),
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)
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else:
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Name: geoseeq
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Version: 0.6.
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Summary: GeoSeeq command line tools and python API
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Author: David C. Danko
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Author-email: "David C. Danko" <dcdanko@biotia.io>
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# Geoseeq API Client
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