geoseeq 0.5.6a6__tar.gz → 0.5.6a7__tar.gz
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- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/PKG-INFO +1 -1
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/cli/main.py +1 -1
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/result/file_download.py +2 -2
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq.egg-info/PKG-INFO +1 -1
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/pyproject.toml +1 -1
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/setup.py +1 -1
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/LICENSE +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/README.md +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/__init__.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/app.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/blob_constructors.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/bulk_creators.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/cli/__init__.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/cli/constants.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/cli/copy.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/cli/detail.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/cli/download.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/cli/fastq_utils.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/cli/get_eula.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/cli/manage.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/cli/progress_bar.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/cli/run.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/cli/search.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/cli/shared_params/__init__.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/cli/shared_params/common_state.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/cli/shared_params/config.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/cli/shared_params/id_handlers.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/cli/shared_params/obj_getters.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/cli/shared_params/opts_and_args.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/cli/upload/__init__.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/cli/upload/upload.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/cli/upload/upload_advanced.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/cli/upload/upload_reads.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/cli/user.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/cli/utils.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/cli/view.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/constants.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/contrib/__init__.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/contrib/ncbi/__init__.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/contrib/ncbi/api.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/contrib/ncbi/bioproject.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/contrib/ncbi/cli.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/contrib/ncbi/setup_logging.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/file_system_cache.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/id_constructors/__init__.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/id_constructors/from_blobs.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/id_constructors/from_ids.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/id_constructors/from_names.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/id_constructors/from_uuids.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/id_constructors/resolvers.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/id_constructors/utils.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/knex.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/organization.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/pipeline.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/plotting/__init__.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/plotting/constants.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/plotting/highcharts.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/plotting/map/__init__.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/plotting/map/base_layer.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/plotting/map/map.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/plotting/map/overlay.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/plotting/selectable.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/project.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/remote_object.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/result/__init__.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/result/bioinfo.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/result/file_upload.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/result/result_file.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/result/result_folder.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/result/utils.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/sample.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/search.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/upload_download_manager.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/user.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/utils.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/vc/__init__.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/vc/checksum.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/vc/cli.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/vc/clone.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/vc/constants.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/vc/vc_cache.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/vc/vc_dir.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/vc/vc_sample.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/vc/vc_stub.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq/work_orders.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq.egg-info/SOURCES.txt +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq.egg-info/dependency_links.txt +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq.egg-info/entry_points.txt +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/geoseeq.egg-info/top_level.txt +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/setup.cfg +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/tests/__init__.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/tests/test_api_client.py +0 -0
- {geoseeq-0.5.6a6 → geoseeq-0.5.6a7}/tests/test_plotting.py +0 -0
@@ -53,7 +53,7 @@ def version():
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Use of this tool implies acceptance of the GeoSeeq End User License Agreement.
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Run `geoseeq eula show` to view the EULA.
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"""
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click.echo('0.5.
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click.echo('0.5.6a7') # remember to update setup
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@main.group('advanced')
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@@ -87,7 +87,7 @@ class ResultFileDownload:
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def _download_flag_path(self, filename, flag_suffix='.gs_downloaded'):
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return filename + flag_suffix
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def download_needs_update(self, filename, flag_suffix='.gs_downloaded'):
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def download_needs_update(self, filename, flag_suffix='.gs_downloaded', slack=5):
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"""Return True if the file needs to be downloaded, False otherwise.
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If either the file or the flag file does not exist, return True.
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Otherwise, return False.
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"""
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if isfile(filename) and isfile(self._download_flag_path(filename, flag_suffix)):
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if getmtime(filename) >
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if self.updated_at_timestamp - getmtime(self._download_flag_path(filename, flag_suffix)) > slack:
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return True
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return False
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return True
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@@ -5,7 +5,7 @@ import setuptools
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setuptools.setup(
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name='geoseeq',
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version='0.5.
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version='0.5.6a7', # remember to update version string in CLI as well
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author="David C. Danko",
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author_email='dcdanko@biotia.io',
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description=open('README.md').read(),
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