geoseeq 0.5.6a3__tar.gz → 0.5.6a5__tar.gz

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  1. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/PKG-INFO +1 -1
  2. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/cli/main.py +4 -2
  3. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq.egg-info/PKG-INFO +1 -1
  4. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/pyproject.toml +1 -1
  5. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/setup.py +1 -1
  6. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/LICENSE +0 -0
  7. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/README.md +0 -0
  8. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/__init__.py +0 -0
  9. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/app.py +0 -0
  10. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/blob_constructors.py +0 -0
  11. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/bulk_creators.py +0 -0
  12. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/cli/__init__.py +0 -0
  13. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/cli/constants.py +0 -0
  14. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/cli/copy.py +0 -0
  15. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/cli/detail.py +0 -0
  16. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/cli/download.py +0 -0
  17. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/cli/fastq_utils.py +0 -0
  18. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/cli/get_eula.py +0 -0
  19. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/cli/manage.py +0 -0
  20. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/cli/progress_bar.py +0 -0
  21. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/cli/run.py +0 -0
  22. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/cli/search.py +0 -0
  23. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/cli/shared_params/__init__.py +0 -0
  24. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/cli/shared_params/common_state.py +0 -0
  25. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/cli/shared_params/config.py +0 -0
  26. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/cli/shared_params/id_handlers.py +0 -0
  27. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/cli/shared_params/obj_getters.py +0 -0
  28. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/cli/shared_params/opts_and_args.py +0 -0
  29. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/cli/upload/__init__.py +0 -0
  30. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/cli/upload/upload.py +0 -0
  31. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/cli/upload/upload_advanced.py +0 -0
  32. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/cli/upload/upload_reads.py +0 -0
  33. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/cli/user.py +0 -0
  34. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/cli/utils.py +0 -0
  35. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/cli/view.py +0 -0
  36. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/constants.py +0 -0
  37. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/contrib/__init__.py +0 -0
  38. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/contrib/ncbi/__init__.py +0 -0
  39. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/contrib/ncbi/api.py +0 -0
  40. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/contrib/ncbi/bioproject.py +0 -0
  41. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/contrib/ncbi/cli.py +0 -0
  42. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/contrib/ncbi/setup_logging.py +0 -0
  43. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/file_system_cache.py +0 -0
  44. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/id_constructors/__init__.py +0 -0
  45. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/id_constructors/from_blobs.py +0 -0
  46. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/id_constructors/from_ids.py +0 -0
  47. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/id_constructors/from_names.py +0 -0
  48. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/id_constructors/from_uuids.py +0 -0
  49. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/id_constructors/resolvers.py +0 -0
  50. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/id_constructors/utils.py +0 -0
  51. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/knex.py +0 -0
  52. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/organization.py +0 -0
  53. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/pipeline.py +0 -0
  54. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/plotting/__init__.py +0 -0
  55. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/plotting/constants.py +0 -0
  56. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/plotting/highcharts.py +0 -0
  57. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/plotting/map/__init__.py +0 -0
  58. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/plotting/map/base_layer.py +0 -0
  59. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/plotting/map/map.py +0 -0
  60. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/plotting/map/overlay.py +0 -0
  61. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/plotting/selectable.py +0 -0
  62. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/project.py +0 -0
  63. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/remote_object.py +0 -0
  64. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/result/__init__.py +0 -0
  65. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/result/bioinfo.py +0 -0
  66. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/result/file_download.py +0 -0
  67. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/result/file_upload.py +0 -0
  68. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/result/result_file.py +0 -0
  69. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/result/result_folder.py +0 -0
  70. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/result/utils.py +0 -0
  71. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/sample.py +0 -0
  72. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/search.py +0 -0
  73. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/upload_download_manager.py +0 -0
  74. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/user.py +0 -0
  75. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/utils.py +0 -0
  76. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/vc/__init__.py +0 -0
  77. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/vc/checksum.py +0 -0
  78. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/vc/cli.py +0 -0
  79. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/vc/clone.py +0 -0
  80. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/vc/constants.py +0 -0
  81. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/vc/vc_cache.py +0 -0
  82. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/vc/vc_dir.py +0 -0
  83. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/vc/vc_sample.py +0 -0
  84. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/vc/vc_stub.py +0 -0
  85. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/work_orders.py +0 -0
  86. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq.egg-info/SOURCES.txt +0 -0
  87. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq.egg-info/dependency_links.txt +0 -0
  88. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq.egg-info/entry_points.txt +0 -0
  89. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq.egg-info/top_level.txt +0 -0
  90. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/setup.cfg +0 -0
  91. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/tests/__init__.py +0 -0
  92. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/tests/test_api_client.py +0 -0
  93. {geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/tests/test_plotting.py +0 -0
{geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: geoseeq
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- Version: 0.5.6a3
3
+ Version: 0.5.6a5
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  Summary: GeoSeeq command line tools and python API
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  Author: David C. Danko
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  Author-email: "David C. Danko" <dcdanko@biotia.io>
{geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/cli/main.py RENAMED
@@ -53,7 +53,7 @@ def version():
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  Use of this tool implies acceptance of the GeoSeeq End User License Agreement.
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  Run `geoseeq eula show` to view the EULA.
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  """
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- click.echo('0.5.6a3') # remember to update setup
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+ click.echo('0.5.6a5') # remember to update setup
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  @main.group('advanced')
@@ -90,7 +90,9 @@ def cli_config(yes, api_token, endpoint, profile, overwrite):
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  if not profile and not yes:
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  profile = click.prompt(f'Set custom profile name? (Leave blank for default)', default="").strip(' \"\'')
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  if not endpoint:
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- endpoint = click.prompt(f'Enter the URL to use for GeoSeeq (Most users can use the default)', default=DEFAULT_ENDPOINT).strip(' \"\'')
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+ endpoint = DEFAULT_ENDPOINT
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+ if not yes:
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+ endpoint = click.prompt(f'Enter the URL to use for GeoSeeq (Most users can use the default)', default=DEFAULT_ENDPOINT).strip(' \"\'')
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  if not api_token:
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  api_token = click.prompt(f'Enter your GeoSeeq API token', hide_input=True).strip(' \"\'')
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  if not yes:
{geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: geoseeq
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- Version: 0.5.6a3
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+ Version: 0.5.6a5
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  Summary: GeoSeeq command line tools and python API
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  Author: David C. Danko
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  Author-email: "David C. Danko" <dcdanko@biotia.io>
{geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/pyproject.toml RENAMED
@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
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  [project]
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  name = "geoseeq"
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- version = "0.5.6a3"
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+ version = "0.5.6a5"
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  authors = [
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  { name="David C. Danko", email="dcdanko@biotia.io" },
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  ]
{geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/setup.py RENAMED
@@ -5,7 +5,7 @@ import setuptools
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  setuptools.setup(
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  name='geoseeq',
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- version='0.5.6a3', # remember to update version string in CLI as well
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+ version='0.5.6a5', # remember to update version string in CLI as well
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  author="David C. Danko",
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  author_email='dcdanko@biotia.io',
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  description=open('README.md').read(),
{geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/LICENSE RENAMED
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{geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/README.md RENAMED
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{geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/__init__.py RENAMED
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{geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/app.py RENAMED
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{geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/cli/copy.py RENAMED
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{geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/cli/run.py RENAMED
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{geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/cli/user.py RENAMED
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{geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/cli/view.py RENAMED
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{geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/knex.py RENAMED
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{geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/pipeline.py RENAMED
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{geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/project.py RENAMED
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{geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/sample.py RENAMED
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{geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/search.py RENAMED
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{geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/user.py RENAMED
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{geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/utils.py RENAMED
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{geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/vc/cli.py RENAMED
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{geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/geoseeq/vc/clone.py RENAMED
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{geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/setup.cfg RENAMED
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{geoseeq-0.5.6a3 → geoseeq-0.5.6a5}/tests/__init__.py RENAMED
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