geone 1.2.12__tar.gz → 1.2.13__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (142) hide show
  1. geone-1.2.13/PKG-INFO +187 -0
  2. geone-1.2.13/README.md +110 -0
  3. geone-1.2.13/geone.egg-info/PKG-INFO +187 -0
  4. {geone-1.2.12 → geone-1.2.13}/src/geone/_version.py +1 -1
  5. geone-1.2.12/PKG-INFO +0 -276
  6. geone-1.2.12/README.md +0 -199
  7. geone-1.2.12/geone.egg-info/PKG-INFO +0 -276
  8. {geone-1.2.12 → geone-1.2.13}/LICENSE +0 -0
  9. {geone-1.2.12 → geone-1.2.13}/geone.egg-info/SOURCES.txt +0 -0
  10. {geone-1.2.12 → geone-1.2.13}/geone.egg-info/dependency_links.txt +0 -0
  11. {geone-1.2.12 → geone-1.2.13}/geone.egg-info/requires.txt +0 -0
  12. {geone-1.2.12 → geone-1.2.13}/geone.egg-info/top_level.txt +0 -0
  13. {geone-1.2.12 → geone-1.2.13}/pyproject.toml +0 -0
  14. {geone-1.2.12 → geone-1.2.13}/setup.cfg +0 -0
  15. {geone-1.2.12 → geone-1.2.13}/setup.py +0 -0
  16. {geone-1.2.12 → geone-1.2.13}/src/geone/__init__.py +0 -0
  17. {geone-1.2.12 → geone-1.2.13}/src/geone/blockdata.py +0 -0
  18. {geone-1.2.12 → geone-1.2.13}/src/geone/covModel.py +0 -0
  19. {geone-1.2.12 → geone-1.2.13}/src/geone/customcolors.py +0 -0
  20. {geone-1.2.12 → geone-1.2.13}/src/geone/deesseinterface.py +0 -0
  21. {geone-1.2.12 → geone-1.2.13}/src/geone/geosclassicinterface.py +0 -0
  22. {geone-1.2.12 → geone-1.2.13}/src/geone/grf.py +0 -0
  23. {geone-1.2.12 → geone-1.2.13}/src/geone/img.py +0 -0
  24. {geone-1.2.12 → geone-1.2.13}/src/geone/imgplot.py +0 -0
  25. {geone-1.2.12 → geone-1.2.13}/src/geone/imgplot3d.py +0 -0
  26. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/linux_py310/__init__.py +0 -0
  27. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/linux_py310/_deesse.so +0 -0
  28. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/linux_py310/deesse.py +0 -0
  29. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/linux_py311/__init__.py +0 -0
  30. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/linux_py311/_deesse.so +0 -0
  31. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/linux_py311/deesse.py +0 -0
  32. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/linux_py312/__init__.py +0 -0
  33. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/linux_py312/_deesse.so +0 -0
  34. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/linux_py312/deesse.py +0 -0
  35. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/linux_py39/__init__.py +0 -0
  36. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/linux_py39/_deesse.so +0 -0
  37. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/linux_py39/deesse.py +0 -0
  38. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/mac_arm64_py310/__init__.py +0 -0
  39. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/mac_arm64_py310/_deesse.so +0 -0
  40. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/mac_arm64_py310/deesse.py +0 -0
  41. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/mac_arm64_py311/__init__.py +0 -0
  42. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/mac_arm64_py311/_deesse.so +0 -0
  43. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/mac_arm64_py311/deesse.py +0 -0
  44. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/mac_arm64_py312/__init__.py +0 -0
  45. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/mac_arm64_py312/_deesse.so +0 -0
  46. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/mac_arm64_py312/deesse.py +0 -0
  47. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/mac_arm64_py39/__init__.py +0 -0
  48. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/mac_arm64_py39/_deesse.so +0 -0
  49. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/mac_arm64_py39/deesse.py +0 -0
  50. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/mac_x86_64_py310/__init__.py +0 -0
  51. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/mac_x86_64_py310/_deesse.so +0 -0
  52. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/mac_x86_64_py310/deesse.py +0 -0
  53. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/mac_x86_64_py311/__init__.py +0 -0
  54. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/mac_x86_64_py311/_deesse.so +0 -0
  55. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/mac_x86_64_py311/deesse.py +0 -0
  56. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/mac_x86_64_py312/__init__.py +0 -0
  57. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/mac_x86_64_py312/_deesse.so +0 -0
  58. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/mac_x86_64_py312/deesse.py +0 -0
  59. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/mac_x86_64_py39/__init__.py +0 -0
  60. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/mac_x86_64_py39/_deesse.so +0 -0
  61. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/mac_x86_64_py39/deesse.py +0 -0
  62. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/win_py310/__init__.py +0 -0
  63. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/win_py310/_deesse.pyd +0 -0
  64. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/win_py310/deesse.py +0 -0
  65. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/win_py310/vcruntime140.dll +0 -0
  66. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/win_py310/vcruntime140_1.dll +0 -0
  67. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/win_py311/__init__.py +0 -0
  68. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/win_py311/_deesse.pyd +0 -0
  69. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/win_py311/deesse.py +0 -0
  70. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/win_py311/vcruntime140.dll +0 -0
  71. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/win_py311/vcruntime140_1.dll +0 -0
  72. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/win_py312/__init__.py +0 -0
  73. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/win_py312/_deesse.pyd +0 -0
  74. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/win_py312/deesse.py +0 -0
  75. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/win_py312/vcruntime140.dll +0 -0
  76. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/win_py312/vcruntime140_1.dll +0 -0
  77. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/win_py39/__init__.py +0 -0
  78. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/win_py39/_deesse.pyd +0 -0
  79. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/win_py39/deesse.py +0 -0
  80. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/win_py39/vcruntime140.dll +0 -0
  81. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_deesse_core/win_py39/vcruntime140_1.dll +0 -0
  82. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_geosclassic_core/linux_py310/__init__.py +0 -0
  83. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_geosclassic_core/linux_py310/_geosclassic.so +0 -0
  84. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_geosclassic_core/linux_py310/geosclassic.py +0 -0
  85. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_geosclassic_core/linux_py311/__init__.py +0 -0
  86. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_geosclassic_core/linux_py311/_geosclassic.so +0 -0
  87. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_geosclassic_core/linux_py311/geosclassic.py +0 -0
  88. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_geosclassic_core/linux_py312/__init__.py +0 -0
  89. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_geosclassic_core/linux_py312/_geosclassic.so +0 -0
  90. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_geosclassic_core/linux_py312/geosclassic.py +0 -0
  91. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_geosclassic_core/linux_py39/__init__.py +0 -0
  92. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_geosclassic_core/linux_py39/_geosclassic.so +0 -0
  93. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_geosclassic_core/linux_py39/geosclassic.py +0 -0
  94. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_geosclassic_core/mac_arm64_py310/__init__.py +0 -0
  95. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_geosclassic_core/mac_arm64_py310/_geosclassic.so +0 -0
  96. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_geosclassic_core/mac_arm64_py310/geosclassic.py +0 -0
  97. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_geosclassic_core/mac_arm64_py311/__init__.py +0 -0
  98. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_geosclassic_core/mac_arm64_py311/_geosclassic.so +0 -0
  99. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_geosclassic_core/mac_arm64_py311/geosclassic.py +0 -0
  100. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_geosclassic_core/mac_arm64_py312/__init__.py +0 -0
  101. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_geosclassic_core/mac_arm64_py312/_geosclassic.so +0 -0
  102. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_geosclassic_core/mac_arm64_py312/geosclassic.py +0 -0
  103. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_geosclassic_core/mac_arm64_py39/__init__.py +0 -0
  104. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_geosclassic_core/mac_arm64_py39/_geosclassic.so +0 -0
  105. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_geosclassic_core/mac_arm64_py39/geosclassic.py +0 -0
  106. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_geosclassic_core/mac_x86_64_py310/__init__.py +0 -0
  107. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_geosclassic_core/mac_x86_64_py310/_geosclassic.so +0 -0
  108. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_geosclassic_core/mac_x86_64_py310/geosclassic.py +0 -0
  109. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_geosclassic_core/mac_x86_64_py311/__init__.py +0 -0
  110. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_geosclassic_core/mac_x86_64_py311/_geosclassic.so +0 -0
  111. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_geosclassic_core/mac_x86_64_py311/geosclassic.py +0 -0
  112. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_geosclassic_core/mac_x86_64_py312/__init__.py +0 -0
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  115. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_geosclassic_core/mac_x86_64_py39/__init__.py +0 -0
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  117. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_geosclassic_core/mac_x86_64_py39/geosclassic.py +0 -0
  118. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_geosclassic_core/win_py310/__init__.py +0 -0
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  120. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_geosclassic_core/win_py310/geosclassic.py +0 -0
  121. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_geosclassic_core/win_py310/vcruntime140.dll +0 -0
  122. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_geosclassic_core/win_py310/vcruntime140_1.dll +0 -0
  123. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_geosclassic_core/win_py311/__init__.py +0 -0
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  129. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_geosclassic_core/win_py312/_geosclassic.pyd +0 -0
  130. {geone-1.2.12 → geone-1.2.13}/src/geone/lib_geosclassic_core/win_py312/geosclassic.py +0 -0
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  138. {geone-1.2.12 → geone-1.2.13}/src/geone/multiGaussian.py +0 -0
  139. {geone-1.2.12 → geone-1.2.13}/src/geone/pgs.py +0 -0
  140. {geone-1.2.12 → geone-1.2.13}/src/geone/randProcess.py +0 -0
  141. {geone-1.2.12 → geone-1.2.13}/src/geone/tools.py +0 -0
  142. {geone-1.2.12 → geone-1.2.13}/tests/test_estimator.py +0 -0
geone-1.2.13/PKG-INFO ADDED
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+ Metadata-Version: 2.1
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+ Name: geone
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+ Version: 1.2.13
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+ Summary: Geostatistics tools and Multiple Point Statistics
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+ Author-email: Julien Straubhaar <julien.straubhaar@unine.ch>, Philippe Renard <philippe.renard@unine.ch>
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+ License:
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+ LICENSE
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+
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+ Copyright (c) 2023 - University of Neuchâtel
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+
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+
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+ PREAMBLE
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+
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+ GEONE is a python package providing a set of tools for geostatistical
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+ and multiple-point statistics modeling. It contains the DEESSE library
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+ in the sub-package deesse_core.
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+
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+ DEESSE is a commercial product which is not provided as an open source
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+ software and belongs to the University of Neuchâtel. GEONE includes a
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+ wrapper allowing to launch DEESSE directly in python.
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+
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+ GEONE is provided as an open source code with an open access license
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+ applicable for all the code except the deesse_core subpackage (see
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+ details below).
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+
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+ DEESSE and therefore the deesse_core subpackage requires a specific
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+ license agreement for commercial use only. The use of DEESSE is free
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+ (royalty free) and unlimited for academic research and teaching
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+ activities. Its use for industrial and commercial activities is
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+ authorized only under a specific license agreement to be concluded
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+ with the University of Neuchâtel. Such commercial license must be
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+ obtained before any commercial or industrial use to take place and
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+ fees will be charged. To obtain such a commercial license from the
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+ University of Neuchâtel, the users shall contact directly Prof.
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+ Philippe Renard (philippe.renard@unine.ch).
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+
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+
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+ LICENSE TERMS FOR THE SOFTWARE GEONE
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+
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+ Permission is hereby granted, free of charge, to any person obtaining
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+ a copy of this software and associated documentation files, to deal in
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+ the software GEONE (“The Software”) excluding the software DEESSE,
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+ without restriction, including without limitation the rights to use,
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+ copy, modify, merge, publish, distribute, sublicense, and/or sell
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+ copies of the Software, and to permit persons to whom the Software is
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+ furnished to do so, subject to the following condition:
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+
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+ The above copyright notice and this permission notice shall be
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+ included in all copies or substantial portions of the Software.
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+
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+ The permission granted herehover is related to the Software only and
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+ does not imply any commercial or industrial license grant concerning
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+ DEESSE software also made available by the copyright owners and the
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+ University of Neuchâtel on the GitHub platform.
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+
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+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
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+ EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
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+ MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
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+ IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY
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+ CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT,
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+ TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE
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+ SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
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+
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+
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+ Project-URL: Repository, https://github.com/randlab/geone
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+ Project-URL: Issues, https://github.com/randlab/geone/issues
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+ Keywords: Geostatistics,Multiple Point Statistics,deesse,two point statistics,covariance,variogram,simulation,kriging
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+ Classifier: Programming Language :: Python :: 3
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+ Requires-Python: >=3.7
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+ Description-Content-Type: text/markdown
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+ License-File: LICENSE
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+ Requires-Dist: matplotlib
73
+ Requires-Dist: numpy<2,>=1
74
+ Requires-Dist: pandas
75
+ Requires-Dist: pyvista
76
+ Requires-Dist: scipy
77
+
78
+ # GEONE
79
+
80
+ [![Documentation Status](https://readthedocs.org/projects/geone/badge/?version=latest)](https://geone.readthedocs.io/en/latest/?badge=latest)
81
+
82
+ GEONE is a Python3 package providing a set of tools for geostatistical modeling, including:
83
+
84
+ - multiple-point statistics (MPS) simulation as "DEESSE wrapper"
85
+ - geostatistical tools based on two-point statistics, including "GEOSCLASSIC wrapper"
86
+ - miscellaneous algorithms based on random processes
87
+
88
+ ## Documentation, examples and references
89
+
90
+ The documentation of GEONE is on (https://geone.readthedocs.io).
91
+
92
+ The notebooks (examples) from the doc are available in `docs/source/notebooks`.
93
+
94
+ ## Installation
95
+
96
+ GEONE relies on pre-compiled C libraries (DEESSE and GEOSCLASSIC core)
97
+
98
+ GEONE is available:
99
+
100
+ - on [PyPI](https://pypi.org/) (The Python Package Index), for:
101
+ - linux (x86_64 with GLIBC 2.35) and python 3.9 to 3.12
102
+ - mac (x86_64 or arm64) and python 3.9 to 3.12
103
+ - windows and python 3.9 to 3.12
104
+ - on this [Github repository](https://github.com/randlab/geone), for:
105
+ - linux (x86_64 with GLIBC 2.35 or GLIBC 2.27) and python 3.7 to 3.12
106
+ - mac (x86_64 or arm64) and python 3.8 to 3.12
107
+ - windows and python 3.7 to 3.12
108
+
109
+ ### Installation from [PyPI](https://pypi.org/)
110
+
111
+ In a terminal type
112
+ ```
113
+ pip install geone
114
+ ```
115
+ Or, equivalently: `python -m pip install geone`.
116
+
117
+ ### Installation from this [Github repository](https://github.com/randlab/geone)
118
+
119
+ In a terminal, change directory where to download GEONE, and type
120
+ ```
121
+ git clone https://github.com/randlab/geone.git
122
+ cd geone
123
+ pip install .
124
+ ```
125
+
126
+ *Note:* use `pip install . --verbose` or `pip install . -v` for printing (more) messages during the installation.
127
+
128
+ Alternatively:
129
+
130
+ - Instead of `git clone ...`, you can download GEONE from the [Github repository](https://github.com/randlab/geone): click on the green button "code" and choose "Download ZIP".
131
+ - Then, unzip the archive on your computer
132
+ - Finally, in a terminal, go into the unzipped directory, and type `pip install .`
133
+
134
+ **Warning - Using GEONE**
135
+
136
+ If the installation has been done from github, do not launch python from the directory containing the downloaded sources and where the installation has been done (with `pip`), otherwise `import geone` will fail.
137
+
138
+ ### Requirements
139
+
140
+ The following python packages are used by GEONE (tested on python 3.11.5):
141
+
142
+ - matplotlib (3.8.1)
143
+ - multiprocessing (for parallel processes)
144
+ - numpy (tested with version 1.26.0)
145
+ - pandas (tested with version 2.1.2)
146
+ - pyvista (tested with version 0.42.3)
147
+ - scipy (tested with version 1.11.3)
148
+
149
+ **Warning**
150
+
151
+ numpy version **less than 2.** is required
152
+
153
+ ### Removing GEONE
154
+ In a terminal type
155
+
156
+ `pip uninstall -y geone`
157
+
158
+ *Note: First remove the directory 'geone.egg-info' from the current directory (if present).*
159
+
160
+ <!--
161
+ ## References
162
+
163
+ ### Some references about DEESSE
164
+ - J. Straubhaar, P. Renard (2021) Conditioning Multiple-Point Statistics Simulation to Inequality Data. Earth and Space Science, [doi:10.1029/2020EA001515](https://dx.doi.org/10.1029/2020EA001515)
165
+ - J. Straubhaar, P. Renard, T. Chugunova (2020) Multiple-point statistics using multi-resolution images. Stochastic Environmental Research and Risk Assessment 20, 251-273, [doi:10.1007/s00477-020-01770-8](https://dx.doi.org/10.1007/s00477-020-01770-8)
166
+ - J. Straubhaar, P. Renard, G. Mariethoz (2016) Conditioning multiple-point statistics simulations to block data. Spatial Statistics 16, 53-71, [doi:10.1016/j.spasta.2016.02.005](https://dx.doi.org/10.1016/j.spasta.2016.02.005)
167
+ - G. Mariethoz, J. Straubhaar, P. Renard, T. Chugunova, P. Biver (2015) Constraining distance-based multipoint simulations to proportions and trends. Environmental Modelling & Software 72, 184-197, [doi:10.1016/j.envsoft.2015.07.007](https://dx.doi.org/10.1016/j.envsoft.2015.07.007)
168
+ - G. Mariethoz, P. Renard, J. Straubhaar (2010) The Direct Sampling method to perform multiple-point geostatistical simulation. Water Resources Research 46, W11536, [doi:10.1029/2008WR007621](https://dx.doi.org/10.1029/2008WR007621)
169
+
170
+ ### Reference about DEESSEX
171
+ - A. Comunian, P. Renard, J. Straubhaar (2012) 3D multiple-point statistics simulation using 2D training images. Computers & Geosciences 40, 49-65, [doi:10.1016/j.cageo.2011.07.009](https://dx.doi.org/10.1016/j.cageo.2011.07.009)
172
+
173
+ ### Some references about GRF
174
+ - J. W. Cooley and J. W. Tukey (1965) An algorithm for machine calculation of complex fourier series. Mathematics of Computation 19(90):297-301, [doi:10.2307/2003354](https://dx.doi.org/10.2307/2003354)
175
+ - C. R. Dietrich and G. N. Newsam (1993) A fast and exact method for multidimensional gaussian stochastic simulations. Water Resources Research 29(8):2861-2869, [doi:10.1029/93WR01070](https://dx.doi.org/10.1029/93WR01070)
176
+ - A. T. A. Wood and G. Chan (1994) Simulation of stationary gaussian processes in [0,1]^d. Journal of Computational and Graphical Statistics 3(4):409-432, [doi:10.2307/1390903](https://dx.doi.org/10.2307/1390903)
177
+
178
+ ### Other references
179
+ - C. Lantuéjoul (2002) Geostatistical Simulation, Models and Algorithms. Springer Verlag, Berlin, 256 p.
180
+ -->
181
+
182
+ ## License
183
+
184
+ See [LICENSE](LICENSE) file.
185
+
186
+ ## Authors
187
+ GEONE is developed by [Julien Straubhaar](https://www.unine.ch/philippe.renard/home/the-team/julien-straubhaar.html) and [Philippe Renard](https://www.unine.ch/philippe.renard/home/the-team/philippe-renard.html).
geone-1.2.13/README.md ADDED
@@ -0,0 +1,110 @@
1
+ # GEONE
2
+
3
+ [![Documentation Status](https://readthedocs.org/projects/geone/badge/?version=latest)](https://geone.readthedocs.io/en/latest/?badge=latest)
4
+
5
+ GEONE is a Python3 package providing a set of tools for geostatistical modeling, including:
6
+
7
+ - multiple-point statistics (MPS) simulation as "DEESSE wrapper"
8
+ - geostatistical tools based on two-point statistics, including "GEOSCLASSIC wrapper"
9
+ - miscellaneous algorithms based on random processes
10
+
11
+ ## Documentation, examples and references
12
+
13
+ The documentation of GEONE is on (https://geone.readthedocs.io).
14
+
15
+ The notebooks (examples) from the doc are available in `docs/source/notebooks`.
16
+
17
+ ## Installation
18
+
19
+ GEONE relies on pre-compiled C libraries (DEESSE and GEOSCLASSIC core)
20
+
21
+ GEONE is available:
22
+
23
+ - on [PyPI](https://pypi.org/) (The Python Package Index), for:
24
+ - linux (x86_64 with GLIBC 2.35) and python 3.9 to 3.12
25
+ - mac (x86_64 or arm64) and python 3.9 to 3.12
26
+ - windows and python 3.9 to 3.12
27
+ - on this [Github repository](https://github.com/randlab/geone), for:
28
+ - linux (x86_64 with GLIBC 2.35 or GLIBC 2.27) and python 3.7 to 3.12
29
+ - mac (x86_64 or arm64) and python 3.8 to 3.12
30
+ - windows and python 3.7 to 3.12
31
+
32
+ ### Installation from [PyPI](https://pypi.org/)
33
+
34
+ In a terminal type
35
+ ```
36
+ pip install geone
37
+ ```
38
+ Or, equivalently: `python -m pip install geone`.
39
+
40
+ ### Installation from this [Github repository](https://github.com/randlab/geone)
41
+
42
+ In a terminal, change directory where to download GEONE, and type
43
+ ```
44
+ git clone https://github.com/randlab/geone.git
45
+ cd geone
46
+ pip install .
47
+ ```
48
+
49
+ *Note:* use `pip install . --verbose` or `pip install . -v` for printing (more) messages during the installation.
50
+
51
+ Alternatively:
52
+
53
+ - Instead of `git clone ...`, you can download GEONE from the [Github repository](https://github.com/randlab/geone): click on the green button "code" and choose "Download ZIP".
54
+ - Then, unzip the archive on your computer
55
+ - Finally, in a terminal, go into the unzipped directory, and type `pip install .`
56
+
57
+ **Warning - Using GEONE**
58
+
59
+ If the installation has been done from github, do not launch python from the directory containing the downloaded sources and where the installation has been done (with `pip`), otherwise `import geone` will fail.
60
+
61
+ ### Requirements
62
+
63
+ The following python packages are used by GEONE (tested on python 3.11.5):
64
+
65
+ - matplotlib (3.8.1)
66
+ - multiprocessing (for parallel processes)
67
+ - numpy (tested with version 1.26.0)
68
+ - pandas (tested with version 2.1.2)
69
+ - pyvista (tested with version 0.42.3)
70
+ - scipy (tested with version 1.11.3)
71
+
72
+ **Warning**
73
+
74
+ numpy version **less than 2.** is required
75
+
76
+ ### Removing GEONE
77
+ In a terminal type
78
+
79
+ `pip uninstall -y geone`
80
+
81
+ *Note: First remove the directory 'geone.egg-info' from the current directory (if present).*
82
+
83
+ <!--
84
+ ## References
85
+
86
+ ### Some references about DEESSE
87
+ - J. Straubhaar, P. Renard (2021) Conditioning Multiple-Point Statistics Simulation to Inequality Data. Earth and Space Science, [doi:10.1029/2020EA001515](https://dx.doi.org/10.1029/2020EA001515)
88
+ - J. Straubhaar, P. Renard, T. Chugunova (2020) Multiple-point statistics using multi-resolution images. Stochastic Environmental Research and Risk Assessment 20, 251-273, [doi:10.1007/s00477-020-01770-8](https://dx.doi.org/10.1007/s00477-020-01770-8)
89
+ - J. Straubhaar, P. Renard, G. Mariethoz (2016) Conditioning multiple-point statistics simulations to block data. Spatial Statistics 16, 53-71, [doi:10.1016/j.spasta.2016.02.005](https://dx.doi.org/10.1016/j.spasta.2016.02.005)
90
+ - G. Mariethoz, J. Straubhaar, P. Renard, T. Chugunova, P. Biver (2015) Constraining distance-based multipoint simulations to proportions and trends. Environmental Modelling & Software 72, 184-197, [doi:10.1016/j.envsoft.2015.07.007](https://dx.doi.org/10.1016/j.envsoft.2015.07.007)
91
+ - G. Mariethoz, P. Renard, J. Straubhaar (2010) The Direct Sampling method to perform multiple-point geostatistical simulation. Water Resources Research 46, W11536, [doi:10.1029/2008WR007621](https://dx.doi.org/10.1029/2008WR007621)
92
+
93
+ ### Reference about DEESSEX
94
+ - A. Comunian, P. Renard, J. Straubhaar (2012) 3D multiple-point statistics simulation using 2D training images. Computers & Geosciences 40, 49-65, [doi:10.1016/j.cageo.2011.07.009](https://dx.doi.org/10.1016/j.cageo.2011.07.009)
95
+
96
+ ### Some references about GRF
97
+ - J. W. Cooley and J. W. Tukey (1965) An algorithm for machine calculation of complex fourier series. Mathematics of Computation 19(90):297-301, [doi:10.2307/2003354](https://dx.doi.org/10.2307/2003354)
98
+ - C. R. Dietrich and G. N. Newsam (1993) A fast and exact method for multidimensional gaussian stochastic simulations. Water Resources Research 29(8):2861-2869, [doi:10.1029/93WR01070](https://dx.doi.org/10.1029/93WR01070)
99
+ - A. T. A. Wood and G. Chan (1994) Simulation of stationary gaussian processes in [0,1]^d. Journal of Computational and Graphical Statistics 3(4):409-432, [doi:10.2307/1390903](https://dx.doi.org/10.2307/1390903)
100
+
101
+ ### Other references
102
+ - C. Lantuéjoul (2002) Geostatistical Simulation, Models and Algorithms. Springer Verlag, Berlin, 256 p.
103
+ -->
104
+
105
+ ## License
106
+
107
+ See [LICENSE](LICENSE) file.
108
+
109
+ ## Authors
110
+ GEONE is developed by [Julien Straubhaar](https://www.unine.ch/philippe.renard/home/the-team/julien-straubhaar.html) and [Philippe Renard](https://www.unine.ch/philippe.renard/home/the-team/philippe-renard.html).
@@ -0,0 +1,187 @@
1
+ Metadata-Version: 2.1
2
+ Name: geone
3
+ Version: 1.2.13
4
+ Summary: Geostatistics tools and Multiple Point Statistics
5
+ Author-email: Julien Straubhaar <julien.straubhaar@unine.ch>, Philippe Renard <philippe.renard@unine.ch>
6
+ License:
7
+ LICENSE
8
+
9
+ Copyright (c) 2023 - University of Neuchâtel
10
+
11
+
12
+ PREAMBLE
13
+
14
+ GEONE is a python package providing a set of tools for geostatistical
15
+ and multiple-point statistics modeling. It contains the DEESSE library
16
+ in the sub-package deesse_core.
17
+
18
+ DEESSE is a commercial product which is not provided as an open source
19
+ software and belongs to the University of Neuchâtel. GEONE includes a
20
+ wrapper allowing to launch DEESSE directly in python.
21
+
22
+ GEONE is provided as an open source code with an open access license
23
+ applicable for all the code except the deesse_core subpackage (see
24
+ details below).
25
+
26
+ DEESSE and therefore the deesse_core subpackage requires a specific
27
+ license agreement for commercial use only. The use of DEESSE is free
28
+ (royalty free) and unlimited for academic research and teaching
29
+ activities. Its use for industrial and commercial activities is
30
+ authorized only under a specific license agreement to be concluded
31
+ with the University of Neuchâtel. Such commercial license must be
32
+ obtained before any commercial or industrial use to take place and
33
+ fees will be charged. To obtain such a commercial license from the
34
+ University of Neuchâtel, the users shall contact directly Prof.
35
+ Philippe Renard (philippe.renard@unine.ch).
36
+
37
+
38
+ LICENSE TERMS FOR THE SOFTWARE GEONE
39
+
40
+ Permission is hereby granted, free of charge, to any person obtaining
41
+ a copy of this software and associated documentation files, to deal in
42
+ the software GEONE (“The Software”) excluding the software DEESSE,
43
+ without restriction, including without limitation the rights to use,
44
+ copy, modify, merge, publish, distribute, sublicense, and/or sell
45
+ copies of the Software, and to permit persons to whom the Software is
46
+ furnished to do so, subject to the following condition:
47
+
48
+ The above copyright notice and this permission notice shall be
49
+ included in all copies or substantial portions of the Software.
50
+
51
+ The permission granted herehover is related to the Software only and
52
+ does not imply any commercial or industrial license grant concerning
53
+ DEESSE software also made available by the copyright owners and the
54
+ University of Neuchâtel on the GitHub platform.
55
+
56
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
57
+ EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
58
+ MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
59
+ IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY
60
+ CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT,
61
+ TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE
62
+ SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
63
+
64
+
65
+ Project-URL: Repository, https://github.com/randlab/geone
66
+ Project-URL: Issues, https://github.com/randlab/geone/issues
67
+ Keywords: Geostatistics,Multiple Point Statistics,deesse,two point statistics,covariance,variogram,simulation,kriging
68
+ Classifier: Programming Language :: Python :: 3
69
+ Requires-Python: >=3.7
70
+ Description-Content-Type: text/markdown
71
+ License-File: LICENSE
72
+ Requires-Dist: matplotlib
73
+ Requires-Dist: numpy<2,>=1
74
+ Requires-Dist: pandas
75
+ Requires-Dist: pyvista
76
+ Requires-Dist: scipy
77
+
78
+ # GEONE
79
+
80
+ [![Documentation Status](https://readthedocs.org/projects/geone/badge/?version=latest)](https://geone.readthedocs.io/en/latest/?badge=latest)
81
+
82
+ GEONE is a Python3 package providing a set of tools for geostatistical modeling, including:
83
+
84
+ - multiple-point statistics (MPS) simulation as "DEESSE wrapper"
85
+ - geostatistical tools based on two-point statistics, including "GEOSCLASSIC wrapper"
86
+ - miscellaneous algorithms based on random processes
87
+
88
+ ## Documentation, examples and references
89
+
90
+ The documentation of GEONE is on (https://geone.readthedocs.io).
91
+
92
+ The notebooks (examples) from the doc are available in `docs/source/notebooks`.
93
+
94
+ ## Installation
95
+
96
+ GEONE relies on pre-compiled C libraries (DEESSE and GEOSCLASSIC core)
97
+
98
+ GEONE is available:
99
+
100
+ - on [PyPI](https://pypi.org/) (The Python Package Index), for:
101
+ - linux (x86_64 with GLIBC 2.35) and python 3.9 to 3.12
102
+ - mac (x86_64 or arm64) and python 3.9 to 3.12
103
+ - windows and python 3.9 to 3.12
104
+ - on this [Github repository](https://github.com/randlab/geone), for:
105
+ - linux (x86_64 with GLIBC 2.35 or GLIBC 2.27) and python 3.7 to 3.12
106
+ - mac (x86_64 or arm64) and python 3.8 to 3.12
107
+ - windows and python 3.7 to 3.12
108
+
109
+ ### Installation from [PyPI](https://pypi.org/)
110
+
111
+ In a terminal type
112
+ ```
113
+ pip install geone
114
+ ```
115
+ Or, equivalently: `python -m pip install geone`.
116
+
117
+ ### Installation from this [Github repository](https://github.com/randlab/geone)
118
+
119
+ In a terminal, change directory where to download GEONE, and type
120
+ ```
121
+ git clone https://github.com/randlab/geone.git
122
+ cd geone
123
+ pip install .
124
+ ```
125
+
126
+ *Note:* use `pip install . --verbose` or `pip install . -v` for printing (more) messages during the installation.
127
+
128
+ Alternatively:
129
+
130
+ - Instead of `git clone ...`, you can download GEONE from the [Github repository](https://github.com/randlab/geone): click on the green button "code" and choose "Download ZIP".
131
+ - Then, unzip the archive on your computer
132
+ - Finally, in a terminal, go into the unzipped directory, and type `pip install .`
133
+
134
+ **Warning - Using GEONE**
135
+
136
+ If the installation has been done from github, do not launch python from the directory containing the downloaded sources and where the installation has been done (with `pip`), otherwise `import geone` will fail.
137
+
138
+ ### Requirements
139
+
140
+ The following python packages are used by GEONE (tested on python 3.11.5):
141
+
142
+ - matplotlib (3.8.1)
143
+ - multiprocessing (for parallel processes)
144
+ - numpy (tested with version 1.26.0)
145
+ - pandas (tested with version 2.1.2)
146
+ - pyvista (tested with version 0.42.3)
147
+ - scipy (tested with version 1.11.3)
148
+
149
+ **Warning**
150
+
151
+ numpy version **less than 2.** is required
152
+
153
+ ### Removing GEONE
154
+ In a terminal type
155
+
156
+ `pip uninstall -y geone`
157
+
158
+ *Note: First remove the directory 'geone.egg-info' from the current directory (if present).*
159
+
160
+ <!--
161
+ ## References
162
+
163
+ ### Some references about DEESSE
164
+ - J. Straubhaar, P. Renard (2021) Conditioning Multiple-Point Statistics Simulation to Inequality Data. Earth and Space Science, [doi:10.1029/2020EA001515](https://dx.doi.org/10.1029/2020EA001515)
165
+ - J. Straubhaar, P. Renard, T. Chugunova (2020) Multiple-point statistics using multi-resolution images. Stochastic Environmental Research and Risk Assessment 20, 251-273, [doi:10.1007/s00477-020-01770-8](https://dx.doi.org/10.1007/s00477-020-01770-8)
166
+ - J. Straubhaar, P. Renard, G. Mariethoz (2016) Conditioning multiple-point statistics simulations to block data. Spatial Statistics 16, 53-71, [doi:10.1016/j.spasta.2016.02.005](https://dx.doi.org/10.1016/j.spasta.2016.02.005)
167
+ - G. Mariethoz, J. Straubhaar, P. Renard, T. Chugunova, P. Biver (2015) Constraining distance-based multipoint simulations to proportions and trends. Environmental Modelling & Software 72, 184-197, [doi:10.1016/j.envsoft.2015.07.007](https://dx.doi.org/10.1016/j.envsoft.2015.07.007)
168
+ - G. Mariethoz, P. Renard, J. Straubhaar (2010) The Direct Sampling method to perform multiple-point geostatistical simulation. Water Resources Research 46, W11536, [doi:10.1029/2008WR007621](https://dx.doi.org/10.1029/2008WR007621)
169
+
170
+ ### Reference about DEESSEX
171
+ - A. Comunian, P. Renard, J. Straubhaar (2012) 3D multiple-point statistics simulation using 2D training images. Computers & Geosciences 40, 49-65, [doi:10.1016/j.cageo.2011.07.009](https://dx.doi.org/10.1016/j.cageo.2011.07.009)
172
+
173
+ ### Some references about GRF
174
+ - J. W. Cooley and J. W. Tukey (1965) An algorithm for machine calculation of complex fourier series. Mathematics of Computation 19(90):297-301, [doi:10.2307/2003354](https://dx.doi.org/10.2307/2003354)
175
+ - C. R. Dietrich and G. N. Newsam (1993) A fast and exact method for multidimensional gaussian stochastic simulations. Water Resources Research 29(8):2861-2869, [doi:10.1029/93WR01070](https://dx.doi.org/10.1029/93WR01070)
176
+ - A. T. A. Wood and G. Chan (1994) Simulation of stationary gaussian processes in [0,1]^d. Journal of Computational and Graphical Statistics 3(4):409-432, [doi:10.2307/1390903](https://dx.doi.org/10.2307/1390903)
177
+
178
+ ### Other references
179
+ - C. Lantuéjoul (2002) Geostatistical Simulation, Models and Algorithms. Springer Verlag, Berlin, 256 p.
180
+ -->
181
+
182
+ ## License
183
+
184
+ See [LICENSE](LICENSE) file.
185
+
186
+ ## Authors
187
+ GEONE is developed by [Julien Straubhaar](https://www.unine.ch/philippe.renard/home/the-team/julien-straubhaar.html) and [Philippe Renard](https://www.unine.ch/philippe.renard/home/the-team/philippe-renard.html).
@@ -1,6 +1,6 @@
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  # Version
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  # major, minor, micro
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- version_info = (1, 2, 12)
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+ version_info = (1, 2, 13)
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  __version__ = '.'.join(map(str, version_info))