geocif 0.2.54__tar.gz → 0.2.57__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {geocif-0.2.54/geocif.egg-info → geocif-0.2.57}/PKG-INFO +1 -1
- {geocif-0.2.54 → geocif-0.2.57}/geocif/geocif.py +14 -8
- {geocif-0.2.54 → geocif-0.2.57}/geocif/ml/trainers.py +21 -3
- {geocif-0.2.54 → geocif-0.2.57/geocif.egg-info}/PKG-INFO +1 -1
- {geocif-0.2.54 → geocif-0.2.57}/setup.py +1 -1
- {geocif-0.2.54 → geocif-0.2.57}/LICENSE +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/MANIFEST.in +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/README.md +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/__init__.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/agmet/__init__.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/agmet/geoagmet.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/agmet/plot.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/agmet/utils.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/analysis.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/backup/__init__.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/backup/constants.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/backup/features.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/backup/geo.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/backup/geocif.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/backup/metadata.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/backup/models.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/cei/__init__.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/cei/definitions.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/cei/indices.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/experiments.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/geocif_runner.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/indices_runner.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/indices_runner_algeria.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/indices_runner_angola.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/indices_runner_madagascar.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/indices_runner_malawi.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/indices_runner_mozambique.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/indices_runner_south_africa.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/indices_runner_zambia.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/indices_runner_zimbabwe.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/logger.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/ml/__init__.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/ml/correlations.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/ml/embedding.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/ml/feature_engineering.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/ml/feature_selection.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/ml/outliers.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/ml/outlook.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/ml/output.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/ml/spatial_autocorrelation.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/ml/stages.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/ml/stats.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/ml/trend.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/ml/xai.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/mm.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/playground/__init__.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/playground/aa.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/playground/aaaa.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/playground/area.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/playground/automl.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/playground/download_esi.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/playground/enso.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/playground/eval.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/playground/gamtest.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/playground/gee_access.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/playground/misc.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/playground/play_xagg.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/playground/reg.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/playground/sustain.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/playground/test_catboost.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/playground/tmp.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/playground/tmp2.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/playground/tmp3.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/playground/tmp4.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/playground/tmp5.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/playground/wolayita.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/playground/wolayita_maize_mask.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/playground/wolayita_v2.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/playground/wolayita_v3.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/risk/__init__.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/risk/impact_assessment.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/utils.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/viz/__init__.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/viz/gt.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/viz/plot.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/viz/tmp.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif/viz/viz_ml.py +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif.egg-info/SOURCES.txt +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif.egg-info/dependency_links.txt +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif.egg-info/not-zip-safe +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/geocif.egg-info/top_level.txt +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/requirements.txt +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/setup.cfg +0 -0
- {geocif-0.2.54 → geocif-0.2.57}/tests/test_geocif.py +0 -0
@@ -296,12 +296,21 @@ class Geocif:
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cat_features=self.cat_features,
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verbose=False,
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)
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-
elif self.model_name in ["
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+
elif self.model_name in ["tabpfn"]:
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# Identify the column indices for cat_features in X_train
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if self.cat_features is None:
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cat_feature_indices = []
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cat_feature_indices = [X_train.columns.get_loc(col) for col in self.cat_features if
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col in X_train.columns]
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self.model.fit(X_train, self.y_train, categorical_feature_indices=cat_feature_indices)
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elif self.model_name in ["ngboost", "oblique"]:
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X_train = X_train.drop(
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columns=[
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item for item in self.cat_features if item != "Harvest Year"
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]
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)
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self.model.fit(X_train, self.y_train)
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elif self.model_name == "ydf":
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# Combine X_train and y_train
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@@ -367,6 +376,8 @@ class Geocif:
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X_train_scaled = pd.concat([X_scaled_numeric, X_region], axis=1)
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self.model.fit(X_train_scaled, self.y_train)
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elif self.model_name in ["desreg"]:
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self.model.fit(X_train, self.y_train)
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except Exception as e:
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self.logger.error(
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f"Error fitting model for {self.country} {self.crop} {e}"
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@@ -511,12 +522,7 @@ class Geocif:
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elif self.model_name == "ydf":
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y_pred = self.model.evaluate(X_test)
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best_hyperparameters = {}
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elif self.model_name
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X_test = X_test.drop(
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columns=[
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item for item in self.cat_features if item != "Harvest Year"
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]
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)
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elif self.model_name in ["tabpfn", "desreg"]:
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y_pred = self.model.predict(X_test)
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best_hyperparameters = {}
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else:
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@@ -1353,7 +1359,7 @@ class Geocif:
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self.cluster_strategy = "single"
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self.select_cei_by = "Index"
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self.use_cumulative_features = True
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elif self.model_name in ["tabpfn"]:
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elif self.model_name in ["tabpfn", "desreg"]:
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self.do_xai = False
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self.estimate_ci = False
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elif self.model_name in ["oblique", "ydf"]:
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@@ -306,11 +306,29 @@ def auto_train(
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# Identify the column indices for cat_features in X_train
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if cat_features is None:
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cat_feature_indices = []
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else:
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cat_feature_indices = [X_train.columns.get_loc(col) for col in cat_features if
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col in X_train.columns]
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model = AutoTabPFNRegressor(max_time=600,
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categorical_feature_indices=cat_feature_indices,
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#categorical_feature_indices=cat_feature_indices,
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ignore_pretraining_limits=True)
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elif model_name == "desreg":
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from desReg.des.DESRegression import DESRegression
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model_catboost = CatBoostRegressor(**hyperparams, cat_features=cat_features)
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from tabpfn_extensions.post_hoc_ensembles.sklearn_interface import AutoTabPFNRegressor
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# Identify the column indices for cat_features in X_train
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if cat_features is None:
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cat_feature_indices = []
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else:
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cat_feature_indices = [X_train.columns.get_loc(col) for col in cat_features if
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col in X_train.columns]
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model_tabpfn = AutoTabPFNRegressor(max_time=600,
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# categorical_feature_indices=cat_feature_indices,
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ignore_pretraining_limits=True)
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model = DESRegression(regressors_list=[model_catboost, model_tabpfn])
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elif model_name == "ngboost":
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if model_type == "REGRESSION":
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from ngboost import NGBRegressor
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