geocif 0.2.53__tar.gz → 0.2.55__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (89) hide show
  1. {geocif-0.2.53/geocif.egg-info → geocif-0.2.55}/PKG-INFO +1 -1
  2. {geocif-0.2.53 → geocif-0.2.55}/geocif/analysis.py +2 -2
  3. {geocif-0.2.53 → geocif-0.2.55}/geocif/geocif.py +15 -1
  4. {geocif-0.2.53 → geocif-0.2.55}/geocif/ml/trainers.py +2 -1
  5. {geocif-0.2.53 → geocif-0.2.55/geocif.egg-info}/PKG-INFO +1 -1
  6. {geocif-0.2.53 → geocif-0.2.55}/setup.py +1 -1
  7. {geocif-0.2.53 → geocif-0.2.55}/LICENSE +0 -0
  8. {geocif-0.2.53 → geocif-0.2.55}/MANIFEST.in +0 -0
  9. {geocif-0.2.53 → geocif-0.2.55}/README.md +0 -0
  10. {geocif-0.2.53 → geocif-0.2.55}/geocif/__init__.py +0 -0
  11. {geocif-0.2.53 → geocif-0.2.55}/geocif/agmet/__init__.py +0 -0
  12. {geocif-0.2.53 → geocif-0.2.55}/geocif/agmet/geoagmet.py +0 -0
  13. {geocif-0.2.53 → geocif-0.2.55}/geocif/agmet/plot.py +0 -0
  14. {geocif-0.2.53 → geocif-0.2.55}/geocif/agmet/utils.py +0 -0
  15. {geocif-0.2.53 → geocif-0.2.55}/geocif/backup/__init__.py +0 -0
  16. {geocif-0.2.53 → geocif-0.2.55}/geocif/backup/constants.py +0 -0
  17. {geocif-0.2.53 → geocif-0.2.55}/geocif/backup/features.py +0 -0
  18. {geocif-0.2.53 → geocif-0.2.55}/geocif/backup/geo.py +0 -0
  19. {geocif-0.2.53 → geocif-0.2.55}/geocif/backup/geocif.py +0 -0
  20. {geocif-0.2.53 → geocif-0.2.55}/geocif/backup/metadata.py +0 -0
  21. {geocif-0.2.53 → geocif-0.2.55}/geocif/backup/models.py +0 -0
  22. {geocif-0.2.53 → geocif-0.2.55}/geocif/cei/__init__.py +0 -0
  23. {geocif-0.2.53 → geocif-0.2.55}/geocif/cei/definitions.py +0 -0
  24. {geocif-0.2.53 → geocif-0.2.55}/geocif/cei/indices.py +0 -0
  25. {geocif-0.2.53 → geocif-0.2.55}/geocif/experiments.py +0 -0
  26. {geocif-0.2.53 → geocif-0.2.55}/geocif/geocif_runner.py +0 -0
  27. {geocif-0.2.53 → geocif-0.2.55}/geocif/indices_runner.py +0 -0
  28. {geocif-0.2.53 → geocif-0.2.55}/geocif/indices_runner_algeria.py +0 -0
  29. {geocif-0.2.53 → geocif-0.2.55}/geocif/indices_runner_angola.py +0 -0
  30. {geocif-0.2.53 → geocif-0.2.55}/geocif/indices_runner_madagascar.py +0 -0
  31. {geocif-0.2.53 → geocif-0.2.55}/geocif/indices_runner_malawi.py +0 -0
  32. {geocif-0.2.53 → geocif-0.2.55}/geocif/indices_runner_mozambique.py +0 -0
  33. {geocif-0.2.53 → geocif-0.2.55}/geocif/indices_runner_south_africa.py +0 -0
  34. {geocif-0.2.53 → geocif-0.2.55}/geocif/indices_runner_zambia.py +0 -0
  35. {geocif-0.2.53 → geocif-0.2.55}/geocif/indices_runner_zimbabwe.py +0 -0
  36. {geocif-0.2.53 → geocif-0.2.55}/geocif/logger.py +0 -0
  37. {geocif-0.2.53 → geocif-0.2.55}/geocif/ml/__init__.py +0 -0
  38. {geocif-0.2.53 → geocif-0.2.55}/geocif/ml/correlations.py +0 -0
  39. {geocif-0.2.53 → geocif-0.2.55}/geocif/ml/embedding.py +0 -0
  40. {geocif-0.2.53 → geocif-0.2.55}/geocif/ml/feature_engineering.py +0 -0
  41. {geocif-0.2.53 → geocif-0.2.55}/geocif/ml/feature_selection.py +0 -0
  42. {geocif-0.2.53 → geocif-0.2.55}/geocif/ml/outliers.py +0 -0
  43. {geocif-0.2.53 → geocif-0.2.55}/geocif/ml/outlook.py +0 -0
  44. {geocif-0.2.53 → geocif-0.2.55}/geocif/ml/output.py +0 -0
  45. {geocif-0.2.53 → geocif-0.2.55}/geocif/ml/spatial_autocorrelation.py +0 -0
  46. {geocif-0.2.53 → geocif-0.2.55}/geocif/ml/stages.py +0 -0
  47. {geocif-0.2.53 → geocif-0.2.55}/geocif/ml/stats.py +0 -0
  48. {geocif-0.2.53 → geocif-0.2.55}/geocif/ml/trend.py +0 -0
  49. {geocif-0.2.53 → geocif-0.2.55}/geocif/ml/xai.py +0 -0
  50. {geocif-0.2.53 → geocif-0.2.55}/geocif/mm.py +0 -0
  51. {geocif-0.2.53 → geocif-0.2.55}/geocif/playground/__init__.py +0 -0
  52. {geocif-0.2.53 → geocif-0.2.55}/geocif/playground/aa.py +0 -0
  53. {geocif-0.2.53 → geocif-0.2.55}/geocif/playground/aaaa.py +0 -0
  54. {geocif-0.2.53 → geocif-0.2.55}/geocif/playground/area.py +0 -0
  55. {geocif-0.2.53 → geocif-0.2.55}/geocif/playground/automl.py +0 -0
  56. {geocif-0.2.53 → geocif-0.2.55}/geocif/playground/download_esi.py +0 -0
  57. {geocif-0.2.53 → geocif-0.2.55}/geocif/playground/enso.py +0 -0
  58. {geocif-0.2.53 → geocif-0.2.55}/geocif/playground/eval.py +0 -0
  59. {geocif-0.2.53 → geocif-0.2.55}/geocif/playground/gamtest.py +0 -0
  60. {geocif-0.2.53 → geocif-0.2.55}/geocif/playground/gee_access.py +0 -0
  61. {geocif-0.2.53 → geocif-0.2.55}/geocif/playground/misc.py +0 -0
  62. {geocif-0.2.53 → geocif-0.2.55}/geocif/playground/play_xagg.py +0 -0
  63. {geocif-0.2.53 → geocif-0.2.55}/geocif/playground/reg.py +0 -0
  64. {geocif-0.2.53 → geocif-0.2.55}/geocif/playground/sustain.py +0 -0
  65. {geocif-0.2.53 → geocif-0.2.55}/geocif/playground/test_catboost.py +0 -0
  66. {geocif-0.2.53 → geocif-0.2.55}/geocif/playground/tmp.py +0 -0
  67. {geocif-0.2.53 → geocif-0.2.55}/geocif/playground/tmp2.py +0 -0
  68. {geocif-0.2.53 → geocif-0.2.55}/geocif/playground/tmp3.py +0 -0
  69. {geocif-0.2.53 → geocif-0.2.55}/geocif/playground/tmp4.py +0 -0
  70. {geocif-0.2.53 → geocif-0.2.55}/geocif/playground/tmp5.py +0 -0
  71. {geocif-0.2.53 → geocif-0.2.55}/geocif/playground/wolayita.py +0 -0
  72. {geocif-0.2.53 → geocif-0.2.55}/geocif/playground/wolayita_maize_mask.py +0 -0
  73. {geocif-0.2.53 → geocif-0.2.55}/geocif/playground/wolayita_v2.py +0 -0
  74. {geocif-0.2.53 → geocif-0.2.55}/geocif/playground/wolayita_v3.py +0 -0
  75. {geocif-0.2.53 → geocif-0.2.55}/geocif/risk/__init__.py +0 -0
  76. {geocif-0.2.53 → geocif-0.2.55}/geocif/risk/impact_assessment.py +0 -0
  77. {geocif-0.2.53 → geocif-0.2.55}/geocif/utils.py +0 -0
  78. {geocif-0.2.53 → geocif-0.2.55}/geocif/viz/__init__.py +0 -0
  79. {geocif-0.2.53 → geocif-0.2.55}/geocif/viz/gt.py +0 -0
  80. {geocif-0.2.53 → geocif-0.2.55}/geocif/viz/plot.py +0 -0
  81. {geocif-0.2.53 → geocif-0.2.55}/geocif/viz/tmp.py +0 -0
  82. {geocif-0.2.53 → geocif-0.2.55}/geocif/viz/viz_ml.py +0 -0
  83. {geocif-0.2.53 → geocif-0.2.55}/geocif.egg-info/SOURCES.txt +0 -0
  84. {geocif-0.2.53 → geocif-0.2.55}/geocif.egg-info/dependency_links.txt +0 -0
  85. {geocif-0.2.53 → geocif-0.2.55}/geocif.egg-info/not-zip-safe +0 -0
  86. {geocif-0.2.53 → geocif-0.2.55}/geocif.egg-info/top_level.txt +0 -0
  87. {geocif-0.2.53 → geocif-0.2.55}/requirements.txt +0 -0
  88. {geocif-0.2.53 → geocif-0.2.55}/setup.cfg +0 -0
  89. {geocif-0.2.53 → geocif-0.2.55}/tests/test_geocif.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
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  Name: geocif
3
- Version: 0.2.53
3
+ Version: 0.2.55
4
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  Summary: Models to visualize and forecast crop conditions and yields
5
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  Home-page: https://ritviksahajpal.github.io/yield_forecasting/
6
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  Author: Ritvik Sahajpal
@@ -142,7 +142,7 @@ class Geoanalysis:
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  try:
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  df = pd.read_sql_query(sql, con)
144
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  except sqlite3.Error:
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- self.logger.exception("failed reading %s", self.table)
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+ self.logger.error("failed reading %s", self.table)
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  self.df_analysis = pd.DataFrame()
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  return
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@@ -561,7 +561,7 @@ class Geoanalysis:
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  self.logger.info("Using configuration table: %s", latest)
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  self.df_config = pd.read_sql_query(f"SELECT * FROM {latest}", con)
563
563
  except Exception:
564
- self.logger.exception("Failed to fetch configuration")
564
+ self.logger.error("Failed to fetch configuration")
565
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566
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  def setup(self) -> None:
567
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  self.dict_config: dict[str, dict] = {}
@@ -296,12 +296,26 @@ class Geocif:
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  cat_features=self.cat_features,
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  verbose=False,
298
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  )
299
- elif self.model_name in ["ngboost", "oblique", "tabpfn"]:
299
+ elif self.model_name in ["tabpfn"]:
300
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  X_train = X_train.drop(
301
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  columns=[
302
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  item for item in self.cat_features if item != "Harvest Year"
303
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  ]
304
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  )
305
+ # Identify the column indices for cat_features in X_train
306
+ if self.cat_features is None:
307
+ cat_feature_indices = []
308
+ cat_feature_indices = [X_train.columns.get_loc(col) for col in self.cat_features if
309
+ col in X_train.columns]
310
+
311
+ self.model.fit(X_train, self.y_train, categorical_feature_indices=cat_feature_indices)
312
+ elif self.model_name in ["ngboost", "oblique"]:
313
+ X_train = X_train.drop(
314
+ columns=[
315
+ item for item in self.cat_features if item != "Harvest Year"
316
+ ]
317
+ )
318
+
305
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  self.model.fit(X_train, self.y_train)
306
320
  elif self.model_name == "ydf":
307
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  # Combine X_train and y_train
@@ -308,8 +308,9 @@ def auto_train(
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  cat_feature_indices = []
309
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  cat_feature_indices = [X_train.columns.get_loc(col) for col in cat_features if
310
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  col in X_train.columns]
311
+
311
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  model = AutoTabPFNRegressor(max_time=600,
312
- categorical_feature_indices=cat_feature_indices,
313
+ #categorical_feature_indices=cat_feature_indices,
313
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  ignore_pretraining_limits=True)
314
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  elif model_name == "ngboost":
315
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  if model_type == "REGRESSION":
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: geocif
3
- Version: 0.2.53
3
+ Version: 0.2.55
4
4
  Summary: Models to visualize and forecast crop conditions and yields
5
5
  Home-page: https://ritviksahajpal.github.io/yield_forecasting/
6
6
  Author: Ritvik Sahajpal
@@ -50,6 +50,6 @@ setup(
50
50
  test_suite="tests",
51
51
  tests_require=test_requirements,
52
52
  url="https://ritviksahajpal.github.io/yield_forecasting/",
53
- version="0.2.53",
53
+ version="0.2.55",
54
54
  zip_safe=False,
55
55
  )
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