geocif 0.2.49__tar.gz → 0.2.51__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {geocif-0.2.49/geocif.egg-info → geocif-0.2.51}/PKG-INFO +1 -1
- {geocif-0.2.49 → geocif-0.2.51}/geocif/analysis.py +0 -21
- {geocif-0.2.49 → geocif-0.2.51}/geocif/ml/xai.py +2 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/viz/plot.py +2 -2
- {geocif-0.2.49 → geocif-0.2.51/geocif.egg-info}/PKG-INFO +1 -1
- {geocif-0.2.49 → geocif-0.2.51}/setup.py +1 -1
- {geocif-0.2.49 → geocif-0.2.51}/LICENSE +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/MANIFEST.in +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/README.md +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/__init__.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/agmet/__init__.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/agmet/geoagmet.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/agmet/plot.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/agmet/utils.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/backup/__init__.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/backup/constants.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/backup/features.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/backup/geo.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/backup/geocif.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/backup/metadata.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/backup/models.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/cei/__init__.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/cei/definitions.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/cei/indices.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/experiments.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/geocif.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/geocif_runner.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/indices_runner.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/indices_runner_algeria.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/indices_runner_angola.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/indices_runner_madagascar.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/indices_runner_malawi.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/indices_runner_mozambique.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/indices_runner_south_africa.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/indices_runner_zambia.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/indices_runner_zimbabwe.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/logger.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/ml/__init__.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/ml/correlations.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/ml/embedding.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/ml/feature_engineering.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/ml/feature_selection.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/ml/outliers.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/ml/outlook.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/ml/output.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/ml/spatial_autocorrelation.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/ml/stages.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/ml/stats.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/ml/trainers.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/ml/trend.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/mm.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/playground/__init__.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/playground/aa.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/playground/aaaa.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/playground/area.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/playground/automl.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/playground/download_esi.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/playground/enso.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/playground/eval.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/playground/gamtest.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/playground/gee_access.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/playground/misc.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/playground/play_xagg.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/playground/reg.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/playground/sustain.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/playground/test_catboost.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/playground/tmp.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/playground/tmp2.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/playground/tmp3.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/playground/tmp4.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/playground/tmp5.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/playground/wolayita.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/playground/wolayita_maize_mask.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/playground/wolayita_v2.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/playground/wolayita_v3.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/risk/__init__.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/risk/impact_assessment.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/utils.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/viz/__init__.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/viz/gt.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/viz/tmp.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif/viz/viz_ml.py +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif.egg-info/SOURCES.txt +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif.egg-info/dependency_links.txt +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif.egg-info/not-zip-safe +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/geocif.egg-info/top_level.txt +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/requirements.txt +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/setup.cfg +0 -0
- {geocif-0.2.49 → geocif-0.2.51}/tests/test_geocif.py +0 -0
@@ -761,27 +761,6 @@ class Geoanalysis:
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# loc_legend="lower left",
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# )
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""" Predicted Yield """
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fname = f"map_{fname_prefix}_{self.crop}_{time_period}_{year}_predicted_yield.png"
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plot.plot_df_shpfile(
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self.dg, # dataframe containing adm1 name and polygon
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df_harvest_year, # dataframe containing information that will be mapped
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merge_col="Country Region", # Column on which to merge
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name_country=countries, # Plot global map
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name_col="Predicted Yield (tn per ha)", # Which column to plot
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dir_out=self.dir_plot / str(year), # Output directory
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fname=fname, # Output file name
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label=f"Predicted Yield (Mg/ha)\n{self.crop.title()}, {year}",
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vmin=df_harvest_year[self.predicted].min(),
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vmax=df_harvest_year[self.predicted].max(),
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cmap=pal.scientific.sequential.Bamako_20_r,
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series="sequential",
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show_bg=False,
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annotate_regions=self.annotate_regions,
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annotate_region_column=annotate_region_column,
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loc_legend="lower left",
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)
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# Make map of predicted yield by country
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for country in countries:
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df_country = df_model[df_model["Country"] == country.lower().replace(" ", "_")]
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@@ -59,6 +59,8 @@ def explain(df_train, df_test, **kwargs):
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############################
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shap_values = explainer(df_test[model.feature_names_])
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for idx, row in tqdm(df_test.iterrows(), desc="SHAP waterfall", leave=False):
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region_name = row["Region"]
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try:
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shap.plots.waterfall(shap_values[idx], show=False)
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except Exception as e:
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@@ -301,7 +301,7 @@ def plot_df_shpfile(
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norm = BoundaryNorm(ticks, ncolors=cmap.mpl_colormap.N, clip=True)
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cbaxes = inset_axes(
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ax, width="
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ax, width="75%", height="3%", loc=loc_legend, borderpad=0.25
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)
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sm = plt.cm.ScalarMappable(norm=norm, cmap=cmap.mpl_colormap)
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# sm._A = []
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@@ -328,7 +328,7 @@ def plot_df_shpfile(
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# plt.setp(cb.ax.xaxis.get_ticklines(), alpha=0.6)
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# Do not show first and last tick label
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ticks[0] = ""
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ticks[-1] = ""
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# ticks[-1] = ""
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cb.ax.set_title(
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label, fontsize=8, fontweight="semibold", fontfamily="Arial"
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)
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