geocif 0.2.49__tar.gz → 0.2.51__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (89) hide show
  1. {geocif-0.2.49/geocif.egg-info → geocif-0.2.51}/PKG-INFO +1 -1
  2. {geocif-0.2.49 → geocif-0.2.51}/geocif/analysis.py +0 -21
  3. {geocif-0.2.49 → geocif-0.2.51}/geocif/ml/xai.py +2 -0
  4. {geocif-0.2.49 → geocif-0.2.51}/geocif/viz/plot.py +2 -2
  5. {geocif-0.2.49 → geocif-0.2.51/geocif.egg-info}/PKG-INFO +1 -1
  6. {geocif-0.2.49 → geocif-0.2.51}/setup.py +1 -1
  7. {geocif-0.2.49 → geocif-0.2.51}/LICENSE +0 -0
  8. {geocif-0.2.49 → geocif-0.2.51}/MANIFEST.in +0 -0
  9. {geocif-0.2.49 → geocif-0.2.51}/README.md +0 -0
  10. {geocif-0.2.49 → geocif-0.2.51}/geocif/__init__.py +0 -0
  11. {geocif-0.2.49 → geocif-0.2.51}/geocif/agmet/__init__.py +0 -0
  12. {geocif-0.2.49 → geocif-0.2.51}/geocif/agmet/geoagmet.py +0 -0
  13. {geocif-0.2.49 → geocif-0.2.51}/geocif/agmet/plot.py +0 -0
  14. {geocif-0.2.49 → geocif-0.2.51}/geocif/agmet/utils.py +0 -0
  15. {geocif-0.2.49 → geocif-0.2.51}/geocif/backup/__init__.py +0 -0
  16. {geocif-0.2.49 → geocif-0.2.51}/geocif/backup/constants.py +0 -0
  17. {geocif-0.2.49 → geocif-0.2.51}/geocif/backup/features.py +0 -0
  18. {geocif-0.2.49 → geocif-0.2.51}/geocif/backup/geo.py +0 -0
  19. {geocif-0.2.49 → geocif-0.2.51}/geocif/backup/geocif.py +0 -0
  20. {geocif-0.2.49 → geocif-0.2.51}/geocif/backup/metadata.py +0 -0
  21. {geocif-0.2.49 → geocif-0.2.51}/geocif/backup/models.py +0 -0
  22. {geocif-0.2.49 → geocif-0.2.51}/geocif/cei/__init__.py +0 -0
  23. {geocif-0.2.49 → geocif-0.2.51}/geocif/cei/definitions.py +0 -0
  24. {geocif-0.2.49 → geocif-0.2.51}/geocif/cei/indices.py +0 -0
  25. {geocif-0.2.49 → geocif-0.2.51}/geocif/experiments.py +0 -0
  26. {geocif-0.2.49 → geocif-0.2.51}/geocif/geocif.py +0 -0
  27. {geocif-0.2.49 → geocif-0.2.51}/geocif/geocif_runner.py +0 -0
  28. {geocif-0.2.49 → geocif-0.2.51}/geocif/indices_runner.py +0 -0
  29. {geocif-0.2.49 → geocif-0.2.51}/geocif/indices_runner_algeria.py +0 -0
  30. {geocif-0.2.49 → geocif-0.2.51}/geocif/indices_runner_angola.py +0 -0
  31. {geocif-0.2.49 → geocif-0.2.51}/geocif/indices_runner_madagascar.py +0 -0
  32. {geocif-0.2.49 → geocif-0.2.51}/geocif/indices_runner_malawi.py +0 -0
  33. {geocif-0.2.49 → geocif-0.2.51}/geocif/indices_runner_mozambique.py +0 -0
  34. {geocif-0.2.49 → geocif-0.2.51}/geocif/indices_runner_south_africa.py +0 -0
  35. {geocif-0.2.49 → geocif-0.2.51}/geocif/indices_runner_zambia.py +0 -0
  36. {geocif-0.2.49 → geocif-0.2.51}/geocif/indices_runner_zimbabwe.py +0 -0
  37. {geocif-0.2.49 → geocif-0.2.51}/geocif/logger.py +0 -0
  38. {geocif-0.2.49 → geocif-0.2.51}/geocif/ml/__init__.py +0 -0
  39. {geocif-0.2.49 → geocif-0.2.51}/geocif/ml/correlations.py +0 -0
  40. {geocif-0.2.49 → geocif-0.2.51}/geocif/ml/embedding.py +0 -0
  41. {geocif-0.2.49 → geocif-0.2.51}/geocif/ml/feature_engineering.py +0 -0
  42. {geocif-0.2.49 → geocif-0.2.51}/geocif/ml/feature_selection.py +0 -0
  43. {geocif-0.2.49 → geocif-0.2.51}/geocif/ml/outliers.py +0 -0
  44. {geocif-0.2.49 → geocif-0.2.51}/geocif/ml/outlook.py +0 -0
  45. {geocif-0.2.49 → geocif-0.2.51}/geocif/ml/output.py +0 -0
  46. {geocif-0.2.49 → geocif-0.2.51}/geocif/ml/spatial_autocorrelation.py +0 -0
  47. {geocif-0.2.49 → geocif-0.2.51}/geocif/ml/stages.py +0 -0
  48. {geocif-0.2.49 → geocif-0.2.51}/geocif/ml/stats.py +0 -0
  49. {geocif-0.2.49 → geocif-0.2.51}/geocif/ml/trainers.py +0 -0
  50. {geocif-0.2.49 → geocif-0.2.51}/geocif/ml/trend.py +0 -0
  51. {geocif-0.2.49 → geocif-0.2.51}/geocif/mm.py +0 -0
  52. {geocif-0.2.49 → geocif-0.2.51}/geocif/playground/__init__.py +0 -0
  53. {geocif-0.2.49 → geocif-0.2.51}/geocif/playground/aa.py +0 -0
  54. {geocif-0.2.49 → geocif-0.2.51}/geocif/playground/aaaa.py +0 -0
  55. {geocif-0.2.49 → geocif-0.2.51}/geocif/playground/area.py +0 -0
  56. {geocif-0.2.49 → geocif-0.2.51}/geocif/playground/automl.py +0 -0
  57. {geocif-0.2.49 → geocif-0.2.51}/geocif/playground/download_esi.py +0 -0
  58. {geocif-0.2.49 → geocif-0.2.51}/geocif/playground/enso.py +0 -0
  59. {geocif-0.2.49 → geocif-0.2.51}/geocif/playground/eval.py +0 -0
  60. {geocif-0.2.49 → geocif-0.2.51}/geocif/playground/gamtest.py +0 -0
  61. {geocif-0.2.49 → geocif-0.2.51}/geocif/playground/gee_access.py +0 -0
  62. {geocif-0.2.49 → geocif-0.2.51}/geocif/playground/misc.py +0 -0
  63. {geocif-0.2.49 → geocif-0.2.51}/geocif/playground/play_xagg.py +0 -0
  64. {geocif-0.2.49 → geocif-0.2.51}/geocif/playground/reg.py +0 -0
  65. {geocif-0.2.49 → geocif-0.2.51}/geocif/playground/sustain.py +0 -0
  66. {geocif-0.2.49 → geocif-0.2.51}/geocif/playground/test_catboost.py +0 -0
  67. {geocif-0.2.49 → geocif-0.2.51}/geocif/playground/tmp.py +0 -0
  68. {geocif-0.2.49 → geocif-0.2.51}/geocif/playground/tmp2.py +0 -0
  69. {geocif-0.2.49 → geocif-0.2.51}/geocif/playground/tmp3.py +0 -0
  70. {geocif-0.2.49 → geocif-0.2.51}/geocif/playground/tmp4.py +0 -0
  71. {geocif-0.2.49 → geocif-0.2.51}/geocif/playground/tmp5.py +0 -0
  72. {geocif-0.2.49 → geocif-0.2.51}/geocif/playground/wolayita.py +0 -0
  73. {geocif-0.2.49 → geocif-0.2.51}/geocif/playground/wolayita_maize_mask.py +0 -0
  74. {geocif-0.2.49 → geocif-0.2.51}/geocif/playground/wolayita_v2.py +0 -0
  75. {geocif-0.2.49 → geocif-0.2.51}/geocif/playground/wolayita_v3.py +0 -0
  76. {geocif-0.2.49 → geocif-0.2.51}/geocif/risk/__init__.py +0 -0
  77. {geocif-0.2.49 → geocif-0.2.51}/geocif/risk/impact_assessment.py +0 -0
  78. {geocif-0.2.49 → geocif-0.2.51}/geocif/utils.py +0 -0
  79. {geocif-0.2.49 → geocif-0.2.51}/geocif/viz/__init__.py +0 -0
  80. {geocif-0.2.49 → geocif-0.2.51}/geocif/viz/gt.py +0 -0
  81. {geocif-0.2.49 → geocif-0.2.51}/geocif/viz/tmp.py +0 -0
  82. {geocif-0.2.49 → geocif-0.2.51}/geocif/viz/viz_ml.py +0 -0
  83. {geocif-0.2.49 → geocif-0.2.51}/geocif.egg-info/SOURCES.txt +0 -0
  84. {geocif-0.2.49 → geocif-0.2.51}/geocif.egg-info/dependency_links.txt +0 -0
  85. {geocif-0.2.49 → geocif-0.2.51}/geocif.egg-info/not-zip-safe +0 -0
  86. {geocif-0.2.49 → geocif-0.2.51}/geocif.egg-info/top_level.txt +0 -0
  87. {geocif-0.2.49 → geocif-0.2.51}/requirements.txt +0 -0
  88. {geocif-0.2.49 → geocif-0.2.51}/setup.cfg +0 -0
  89. {geocif-0.2.49 → geocif-0.2.51}/tests/test_geocif.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: geocif
3
- Version: 0.2.49
3
+ Version: 0.2.51
4
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  Summary: Models to visualize and forecast crop conditions and yields
5
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  Home-page: https://ritviksahajpal.github.io/yield_forecasting/
6
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  Author: Ritvik Sahajpal
@@ -761,27 +761,6 @@ class Geoanalysis:
761
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  # loc_legend="lower left",
762
762
  # )
763
763
 
764
- """ Predicted Yield """
765
- fname = f"map_{fname_prefix}_{self.crop}_{time_period}_{year}_predicted_yield.png"
766
- plot.plot_df_shpfile(
767
- self.dg, # dataframe containing adm1 name and polygon
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- df_harvest_year, # dataframe containing information that will be mapped
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- merge_col="Country Region", # Column on which to merge
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- name_country=countries, # Plot global map
771
- name_col="Predicted Yield (tn per ha)", # Which column to plot
772
- dir_out=self.dir_plot / str(year), # Output directory
773
- fname=fname, # Output file name
774
- label=f"Predicted Yield (Mg/ha)\n{self.crop.title()}, {year}",
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- vmin=df_harvest_year[self.predicted].min(),
776
- vmax=df_harvest_year[self.predicted].max(),
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- cmap=pal.scientific.sequential.Bamako_20_r,
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- series="sequential",
779
- show_bg=False,
780
- annotate_regions=self.annotate_regions,
781
- annotate_region_column=annotate_region_column,
782
- loc_legend="lower left",
783
- )
784
-
785
764
  # Make map of predicted yield by country
786
765
  for country in countries:
787
766
  df_country = df_model[df_model["Country"] == country.lower().replace(" ", "_")]
@@ -59,6 +59,8 @@ def explain(df_train, df_test, **kwargs):
59
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  ############################
60
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  shap_values = explainer(df_test[model.feature_names_])
61
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  for idx, row in tqdm(df_test.iterrows(), desc="SHAP waterfall", leave=False):
62
+ region_name = row["Region"]
63
+
62
64
  try:
63
65
  shap.plots.waterfall(shap_values[idx], show=False)
64
66
  except Exception as e:
@@ -301,7 +301,7 @@ def plot_df_shpfile(
301
301
 
302
302
  norm = BoundaryNorm(ticks, ncolors=cmap.mpl_colormap.N, clip=True)
303
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  cbaxes = inset_axes(
304
- ax, width="60%", height="3%", loc=loc_legend, borderpad=0.25
304
+ ax, width="75%", height="3%", loc=loc_legend, borderpad=0.25
305
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  )
306
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  sm = plt.cm.ScalarMappable(norm=norm, cmap=cmap.mpl_colormap)
307
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  # sm._A = []
@@ -328,7 +328,7 @@ def plot_df_shpfile(
328
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  # plt.setp(cb.ax.xaxis.get_ticklines(), alpha=0.6)
329
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  # Do not show first and last tick label
330
330
  ticks[0] = ""
331
- ticks[-1] = ""
331
+ # ticks[-1] = ""
332
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  cb.ax.set_title(
333
333
  label, fontsize=8, fontweight="semibold", fontfamily="Arial"
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  )
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: geocif
3
- Version: 0.2.49
3
+ Version: 0.2.51
4
4
  Summary: Models to visualize and forecast crop conditions and yields
5
5
  Home-page: https://ritviksahajpal.github.io/yield_forecasting/
6
6
  Author: Ritvik Sahajpal
@@ -50,6 +50,6 @@ setup(
50
50
  test_suite="tests",
51
51
  tests_require=test_requirements,
52
52
  url="https://ritviksahajpal.github.io/yield_forecasting/",
53
- version="0.2.49",
53
+ version="0.2.51",
54
54
  zip_safe=False,
55
55
  )
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