geocif 0.2.26__tar.gz → 0.2.27__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (83) hide show
  1. {geocif-0.2.26/geocif.egg-info → geocif-0.2.27}/PKG-INFO +1 -1
  2. {geocif-0.2.26 → geocif-0.2.27}/geocif/geocif.py +8 -4
  3. {geocif-0.2.26 → geocif-0.2.27}/geocif/ml/feature_selection.py +3 -2
  4. {geocif-0.2.26 → geocif-0.2.27/geocif.egg-info}/PKG-INFO +1 -1
  5. {geocif-0.2.26 → geocif-0.2.27}/setup.py +1 -1
  6. {geocif-0.2.26 → geocif-0.2.27}/LICENSE +0 -0
  7. {geocif-0.2.26 → geocif-0.2.27}/MANIFEST.in +0 -0
  8. {geocif-0.2.26 → geocif-0.2.27}/README.md +0 -0
  9. {geocif-0.2.26 → geocif-0.2.27}/geocif/__init__.py +0 -0
  10. {geocif-0.2.26 → geocif-0.2.27}/geocif/agmet/__init__.py +0 -0
  11. {geocif-0.2.26 → geocif-0.2.27}/geocif/agmet/geoagmet.py +0 -0
  12. {geocif-0.2.26 → geocif-0.2.27}/geocif/agmet/plot.py +0 -0
  13. {geocif-0.2.26 → geocif-0.2.27}/geocif/agmet/utils.py +0 -0
  14. {geocif-0.2.26 → geocif-0.2.27}/geocif/analysis.py +0 -0
  15. {geocif-0.2.26 → geocif-0.2.27}/geocif/backup/__init__.py +0 -0
  16. {geocif-0.2.26 → geocif-0.2.27}/geocif/backup/constants.py +0 -0
  17. {geocif-0.2.26 → geocif-0.2.27}/geocif/backup/features.py +0 -0
  18. {geocif-0.2.26 → geocif-0.2.27}/geocif/backup/geo.py +0 -0
  19. {geocif-0.2.26 → geocif-0.2.27}/geocif/backup/geocif.py +0 -0
  20. {geocif-0.2.26 → geocif-0.2.27}/geocif/backup/metadata.py +0 -0
  21. {geocif-0.2.26 → geocif-0.2.27}/geocif/backup/models.py +0 -0
  22. {geocif-0.2.26 → geocif-0.2.27}/geocif/cei/__init__.py +0 -0
  23. {geocif-0.2.26 → geocif-0.2.27}/geocif/cei/definitions.py +0 -0
  24. {geocif-0.2.26 → geocif-0.2.27}/geocif/cei/indices.py +0 -0
  25. {geocif-0.2.26 → geocif-0.2.27}/geocif/experiments.py +0 -0
  26. {geocif-0.2.26 → geocif-0.2.27}/geocif/geocif_runner.py +0 -0
  27. {geocif-0.2.26 → geocif-0.2.27}/geocif/indices_runner.py +0 -0
  28. {geocif-0.2.26 → geocif-0.2.27}/geocif/indices_runner_angola.py +0 -0
  29. {geocif-0.2.26 → geocif-0.2.27}/geocif/indices_runner_madagascar.py +0 -0
  30. {geocif-0.2.26 → geocif-0.2.27}/geocif/indices_runner_malawi.py +0 -0
  31. {geocif-0.2.26 → geocif-0.2.27}/geocif/indices_runner_mozambique.py +0 -0
  32. {geocif-0.2.26 → geocif-0.2.27}/geocif/indices_runner_south_africa.py +0 -0
  33. {geocif-0.2.26 → geocif-0.2.27}/geocif/indices_runner_zambia.py +0 -0
  34. {geocif-0.2.26 → geocif-0.2.27}/geocif/indices_runner_zimbabwe.py +0 -0
  35. {geocif-0.2.26 → geocif-0.2.27}/geocif/logger.py +0 -0
  36. {geocif-0.2.26 → geocif-0.2.27}/geocif/ml/__init__.py +0 -0
  37. {geocif-0.2.26 → geocif-0.2.27}/geocif/ml/correlations.py +0 -0
  38. {geocif-0.2.26 → geocif-0.2.27}/geocif/ml/embedding.py +0 -0
  39. {geocif-0.2.26 → geocif-0.2.27}/geocif/ml/feature_engineering.py +0 -0
  40. {geocif-0.2.26 → geocif-0.2.27}/geocif/ml/outliers.py +0 -0
  41. {geocif-0.2.26 → geocif-0.2.27}/geocif/ml/outlook.py +0 -0
  42. {geocif-0.2.26 → geocif-0.2.27}/geocif/ml/output.py +0 -0
  43. {geocif-0.2.26 → geocif-0.2.27}/geocif/ml/spatial_autocorrelation.py +0 -0
  44. {geocif-0.2.26 → geocif-0.2.27}/geocif/ml/stages.py +0 -0
  45. {geocif-0.2.26 → geocif-0.2.27}/geocif/ml/stats.py +0 -0
  46. {geocif-0.2.26 → geocif-0.2.27}/geocif/ml/trainers.py +0 -0
  47. {geocif-0.2.26 → geocif-0.2.27}/geocif/ml/trend.py +0 -0
  48. {geocif-0.2.26 → geocif-0.2.27}/geocif/ml/xai.py +0 -0
  49. {geocif-0.2.26 → geocif-0.2.27}/geocif/mm.py +0 -0
  50. {geocif-0.2.26 → geocif-0.2.27}/geocif/playground/__init__.py +0 -0
  51. {geocif-0.2.26 → geocif-0.2.27}/geocif/playground/aa.py +0 -0
  52. {geocif-0.2.26 → geocif-0.2.27}/geocif/playground/area.py +0 -0
  53. {geocif-0.2.26 → geocif-0.2.27}/geocif/playground/automl.py +0 -0
  54. {geocif-0.2.26 → geocif-0.2.27}/geocif/playground/download_esi.py +0 -0
  55. {geocif-0.2.26 → geocif-0.2.27}/geocif/playground/enso.py +0 -0
  56. {geocif-0.2.26 → geocif-0.2.27}/geocif/playground/eval.py +0 -0
  57. {geocif-0.2.26 → geocif-0.2.27}/geocif/playground/gamtest.py +0 -0
  58. {geocif-0.2.26 → geocif-0.2.27}/geocif/playground/gee_access.py +0 -0
  59. {geocif-0.2.26 → geocif-0.2.27}/geocif/playground/misc.py +0 -0
  60. {geocif-0.2.26 → geocif-0.2.27}/geocif/playground/play_xagg.py +0 -0
  61. {geocif-0.2.26 → geocif-0.2.27}/geocif/playground/reg.py +0 -0
  62. {geocif-0.2.26 → geocif-0.2.27}/geocif/playground/sustain.py +0 -0
  63. {geocif-0.2.26 → geocif-0.2.27}/geocif/playground/test_catboost.py +0 -0
  64. {geocif-0.2.26 → geocif-0.2.27}/geocif/playground/tmp.py +0 -0
  65. {geocif-0.2.26 → geocif-0.2.27}/geocif/playground/tmp2.py +0 -0
  66. {geocif-0.2.26 → geocif-0.2.27}/geocif/playground/tmp3.py +0 -0
  67. {geocif-0.2.26 → geocif-0.2.27}/geocif/playground/tmp4.py +0 -0
  68. {geocif-0.2.26 → geocif-0.2.27}/geocif/playground/tmp5.py +0 -0
  69. {geocif-0.2.26 → geocif-0.2.27}/geocif/playground/wolayita_maize_mask.py +0 -0
  70. {geocif-0.2.26 → geocif-0.2.27}/geocif/risk/__init__.py +0 -0
  71. {geocif-0.2.26 → geocif-0.2.27}/geocif/risk/impact_assessment.py +0 -0
  72. {geocif-0.2.26 → geocif-0.2.27}/geocif/utils.py +0 -0
  73. {geocif-0.2.26 → geocif-0.2.27}/geocif/viz/__init__.py +0 -0
  74. {geocif-0.2.26 → geocif-0.2.27}/geocif/viz/gt.py +0 -0
  75. {geocif-0.2.26 → geocif-0.2.27}/geocif/viz/plot.py +0 -0
  76. {geocif-0.2.26 → geocif-0.2.27}/geocif/viz/tmp.py +0 -0
  77. {geocif-0.2.26 → geocif-0.2.27}/geocif.egg-info/SOURCES.txt +0 -0
  78. {geocif-0.2.26 → geocif-0.2.27}/geocif.egg-info/dependency_links.txt +0 -0
  79. {geocif-0.2.26 → geocif-0.2.27}/geocif.egg-info/not-zip-safe +0 -0
  80. {geocif-0.2.26 → geocif-0.2.27}/geocif.egg-info/top_level.txt +0 -0
  81. {geocif-0.2.26 → geocif-0.2.27}/requirements.txt +0 -0
  82. {geocif-0.2.26 → geocif-0.2.27}/setup.cfg +0 -0
  83. {geocif-0.2.26 → geocif-0.2.27}/tests/test_geocif.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
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  Name: geocif
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- Version: 0.2.26
3
+ Version: 0.2.27
4
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  Summary: Models to visualize and forecast crop conditions and yields
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  Home-page: https://ritviksahajpal.github.io/yield_forecasting/
6
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  Author: Ritvik Sahajpal
@@ -211,7 +211,7 @@ class Geocif:
211
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  # obj_pickle = outlook.Outlook(self.pickle_file)
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  # self.df_outlook = obj_pickle.read_outlook_file()
213
213
 
214
- def apply_feature_selector(self, dir_output):
214
+ def apply_feature_selector(self, region, dir_output):
215
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  if self.model_name in ["cumulative_1", "cumulative_2", "cumulative_3"]:
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  all_features = self.X_train.columns
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@@ -224,7 +224,11 @@ class Geocif:
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  else:
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  self.logger.info(f"Selecting features for {self.country} {self.crop}")
226
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  selector, _, self.selected_features = fs.select_features(
227
- self.X_train, self.y_train, method=self.feature_selection, dir_output=dir_output
227
+ self.X_train,
228
+ self.y_train,
229
+ method=self.feature_selection,
230
+ dir_output=dir_output,
231
+ region=region
228
232
  )
229
233
  self.logger.info(f"Selected features: {self.selected_features}")
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234
 
@@ -837,8 +841,8 @@ class Geocif:
837
841
  # Drop any columns with NaNs
838
842
  self.X_train.dropna(axis=1, how="any", inplace=True)
839
843
  self.y_train = df_region_train[self.target_column]
840
- breakpoint()
841
- self.apply_feature_selector(dir_output)
844
+
845
+ self.apply_feature_selector(region, dir_output)
842
846
  self.train_model(df_region_train, scaler, dir_output)
843
847
 
844
848
  """ Predict """
@@ -38,7 +38,8 @@ def select_features(
38
38
  min_features_to_select=3,
39
39
  threshold_nan=0.2,
40
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  threshold_unique=0.6,
41
- dir_output="."
41
+ dir_output=".",
42
+ region=None
42
43
  ):
43
44
  """
44
45
  Feature-selection wrapper supporting many methods plus a new 'multi' option.
@@ -102,7 +103,7 @@ def select_features(
102
103
  plt.tight_layout()
103
104
 
104
105
  dir_output = dir_output / Path("feature_selection")
105
- fig.savefig(dir_output / "feature_selection_frequency.png", dpi=300)
106
+ fig.savefig(dir_output / f"feature_selection_frequency_{region}.png", dpi=300)
106
107
  plt.close(fig)
107
108
 
108
109
  return None, X_out, combined
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: geocif
3
- Version: 0.2.26
3
+ Version: 0.2.27
4
4
  Summary: Models to visualize and forecast crop conditions and yields
5
5
  Home-page: https://ritviksahajpal.github.io/yield_forecasting/
6
6
  Author: Ritvik Sahajpal
@@ -50,6 +50,6 @@ setup(
50
50
  test_suite="tests",
51
51
  tests_require=test_requirements,
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52
  url="https://ritviksahajpal.github.io/yield_forecasting/",
53
- version="0.2.26",
53
+ version="0.2.27",
54
54
  zip_safe=False,
55
55
  )
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