geocif 0.2.26__tar.gz → 0.2.27__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {geocif-0.2.26/geocif.egg-info → geocif-0.2.27}/PKG-INFO +1 -1
- {geocif-0.2.26 → geocif-0.2.27}/geocif/geocif.py +8 -4
- {geocif-0.2.26 → geocif-0.2.27}/geocif/ml/feature_selection.py +3 -2
- {geocif-0.2.26 → geocif-0.2.27/geocif.egg-info}/PKG-INFO +1 -1
- {geocif-0.2.26 → geocif-0.2.27}/setup.py +1 -1
- {geocif-0.2.26 → geocif-0.2.27}/LICENSE +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/MANIFEST.in +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/README.md +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/__init__.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/agmet/__init__.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/agmet/geoagmet.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/agmet/plot.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/agmet/utils.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/analysis.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/backup/__init__.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/backup/constants.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/backup/features.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/backup/geo.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/backup/geocif.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/backup/metadata.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/backup/models.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/cei/__init__.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/cei/definitions.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/cei/indices.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/experiments.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/geocif_runner.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/indices_runner.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/indices_runner_angola.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/indices_runner_madagascar.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/indices_runner_malawi.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/indices_runner_mozambique.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/indices_runner_south_africa.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/indices_runner_zambia.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/indices_runner_zimbabwe.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/logger.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/ml/__init__.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/ml/correlations.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/ml/embedding.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/ml/feature_engineering.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/ml/outliers.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/ml/outlook.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/ml/output.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/ml/spatial_autocorrelation.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/ml/stages.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/ml/stats.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/ml/trainers.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/ml/trend.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/ml/xai.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/mm.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/playground/__init__.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/playground/aa.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/playground/area.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/playground/automl.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/playground/download_esi.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/playground/enso.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/playground/eval.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/playground/gamtest.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/playground/gee_access.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/playground/misc.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/playground/play_xagg.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/playground/reg.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/playground/sustain.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/playground/test_catboost.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/playground/tmp.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/playground/tmp2.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/playground/tmp3.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/playground/tmp4.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/playground/tmp5.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/playground/wolayita_maize_mask.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/risk/__init__.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/risk/impact_assessment.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/utils.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/viz/__init__.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/viz/gt.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/viz/plot.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif/viz/tmp.py +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif.egg-info/SOURCES.txt +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif.egg-info/dependency_links.txt +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif.egg-info/not-zip-safe +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/geocif.egg-info/top_level.txt +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/requirements.txt +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/setup.cfg +0 -0
- {geocif-0.2.26 → geocif-0.2.27}/tests/test_geocif.py +0 -0
@@ -211,7 +211,7 @@ class Geocif:
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# obj_pickle = outlook.Outlook(self.pickle_file)
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# self.df_outlook = obj_pickle.read_outlook_file()
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-
def apply_feature_selector(self, dir_output):
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+
def apply_feature_selector(self, region, dir_output):
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if self.model_name in ["cumulative_1", "cumulative_2", "cumulative_3"]:
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all_features = self.X_train.columns
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@@ -224,7 +224,11 @@ class Geocif:
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else:
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self.logger.info(f"Selecting features for {self.country} {self.crop}")
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selector, _, self.selected_features = fs.select_features(
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self.X_train,
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self.X_train,
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self.y_train,
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method=self.feature_selection,
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dir_output=dir_output,
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region=region
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)
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self.logger.info(f"Selected features: {self.selected_features}")
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@@ -837,8 +841,8 @@ class Geocif:
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# Drop any columns with NaNs
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self.X_train.dropna(axis=1, how="any", inplace=True)
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self.y_train = df_region_train[self.target_column]
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self.apply_feature_selector(dir_output)
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self.apply_feature_selector(region, dir_output)
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self.train_model(df_region_train, scaler, dir_output)
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""" Predict """
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min_features_to_select=3,
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threshold_nan=0.2,
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threshold_unique=0.6,
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dir_output="."
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dir_output=".",
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region=None
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):
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"""
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Feature-selection wrapper supporting many methods plus a new 'multi' option.
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plt.tight_layout()
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dir_output = dir_output / Path("feature_selection")
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fig.savefig(dir_output / "
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fig.savefig(dir_output / f"feature_selection_frequency_{region}.png", dpi=300)
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plt.close(fig)
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return None, X_out, combined
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