geoaquacrop 0.1.0__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- geoaquacrop-0.1.0/LICENSE +202 -0
- geoaquacrop-0.1.0/PKG-INFO +172 -0
- geoaquacrop-0.1.0/README.md +143 -0
- geoaquacrop-0.1.0/pyproject.toml +56 -0
- geoaquacrop-0.1.0/setup.cfg +4 -0
- geoaquacrop-0.1.0/src/geoaquacrop/__init__.py +38 -0
- geoaquacrop-0.1.0/src/geoaquacrop/_util.py +87 -0
- geoaquacrop-0.1.0/src/geoaquacrop/preprocess.py +44 -0
- geoaquacrop-0.1.0/src/geoaquacrop/simulate.py +85 -0
- geoaquacrop-0.1.0/src/geoaquacrop/visualize.py +16 -0
- geoaquacrop-0.1.0/src/geoaquacrop.egg-info/PKG-INFO +172 -0
- geoaquacrop-0.1.0/src/geoaquacrop.egg-info/SOURCES.txt +13 -0
- geoaquacrop-0.1.0/src/geoaquacrop.egg-info/dependency_links.txt +1 -0
- geoaquacrop-0.1.0/src/geoaquacrop.egg-info/requires.txt +7 -0
- geoaquacrop-0.1.0/src/geoaquacrop.egg-info/top_level.txt +1 -0
|
@@ -0,0 +1,202 @@
|
|
|
1
|
+
|
|
2
|
+
Apache License
|
|
3
|
+
Version 2.0, January 2004
|
|
4
|
+
http://www.apache.org/licenses/
|
|
5
|
+
|
|
6
|
+
TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
|
|
7
|
+
|
|
8
|
+
1. Definitions.
|
|
9
|
+
|
|
10
|
+
"License" shall mean the terms and conditions for use, reproduction,
|
|
11
|
+
and distribution as defined by Sections 1 through 9 of this document.
|
|
12
|
+
|
|
13
|
+
"Licensor" shall mean the copyright owner or entity authorized by
|
|
14
|
+
the copyright owner that is granting the License.
|
|
15
|
+
|
|
16
|
+
"Legal Entity" shall mean the union of the acting entity and all
|
|
17
|
+
other entities that control, are controlled by, or are under common
|
|
18
|
+
control with that entity. For the purposes of this definition,
|
|
19
|
+
"control" means (i) the power, direct or indirect, to cause the
|
|
20
|
+
direction or management of such entity, whether by contract or
|
|
21
|
+
otherwise, or (ii) ownership of fifty percent (50%) or more of the
|
|
22
|
+
outstanding shares, or (iii) beneficial ownership of such entity.
|
|
23
|
+
|
|
24
|
+
"You" (or "Your") shall mean an individual or Legal Entity
|
|
25
|
+
exercising permissions granted by this License.
|
|
26
|
+
|
|
27
|
+
"Source" form shall mean the preferred form for making modifications,
|
|
28
|
+
including but not limited to software source code, documentation
|
|
29
|
+
source, and configuration files.
|
|
30
|
+
|
|
31
|
+
"Object" form shall mean any form resulting from mechanical
|
|
32
|
+
transformation or translation of a Source form, including but
|
|
33
|
+
not limited to compiled object code, generated documentation,
|
|
34
|
+
and conversions to other media types.
|
|
35
|
+
|
|
36
|
+
"Work" shall mean the work of authorship, whether in Source or
|
|
37
|
+
Object form, made available under the License, as indicated by a
|
|
38
|
+
copyright notice that is included in or attached to the work
|
|
39
|
+
(an example is provided in the Appendix below).
|
|
40
|
+
|
|
41
|
+
"Derivative Works" shall mean any work, whether in Source or Object
|
|
42
|
+
form, that is based on (or derived from) the Work and for which the
|
|
43
|
+
editorial revisions, annotations, elaborations, or other modifications
|
|
44
|
+
represent, as a whole, an original work of authorship. For the purposes
|
|
45
|
+
of this License, Derivative Works shall not include works that remain
|
|
46
|
+
separable from, or merely link (or bind by name) to the interfaces of,
|
|
47
|
+
the Work and Derivative Works thereof.
|
|
48
|
+
|
|
49
|
+
"Contribution" shall mean any work of authorship, including
|
|
50
|
+
the original version of the Work and any modifications or additions
|
|
51
|
+
to that Work or Derivative Works thereof, that is intentionally
|
|
52
|
+
submitted to Licensor for inclusion in the Work by the copyright owner
|
|
53
|
+
or by an individual or Legal Entity authorized to submit on behalf of
|
|
54
|
+
the copyright owner. For the purposes of this definition, "submitted"
|
|
55
|
+
means any form of electronic, verbal, or written communication sent
|
|
56
|
+
to the Licensor or its representatives, including but not limited to
|
|
57
|
+
communication on electronic mailing lists, source code control systems,
|
|
58
|
+
and issue tracking systems that are managed by, or on behalf of, the
|
|
59
|
+
Licensor for the purpose of discussing and improving the Work, but
|
|
60
|
+
excluding communication that is conspicuously marked or otherwise
|
|
61
|
+
designated in writing by the copyright owner as "Not a Contribution."
|
|
62
|
+
|
|
63
|
+
"Contributor" shall mean Licensor and any individual or Legal Entity
|
|
64
|
+
on behalf of whom a Contribution has been received by Licensor and
|
|
65
|
+
subsequently incorporated within the Work.
|
|
66
|
+
|
|
67
|
+
2. Grant of Copyright License. Subject to the terms and conditions of
|
|
68
|
+
this License, each Contributor hereby grants to You a perpetual,
|
|
69
|
+
worldwide, non-exclusive, no-charge, royalty-free, irrevocable
|
|
70
|
+
copyright license to reproduce, prepare Derivative Works of,
|
|
71
|
+
publicly display, publicly perform, sublicense, and distribute the
|
|
72
|
+
Work and such Derivative Works in Source or Object form.
|
|
73
|
+
|
|
74
|
+
3. Grant of Patent License. Subject to the terms and conditions of
|
|
75
|
+
this License, each Contributor hereby grants to You a perpetual,
|
|
76
|
+
worldwide, non-exclusive, no-charge, royalty-free, irrevocable
|
|
77
|
+
(except as stated in this section) patent license to make, have made,
|
|
78
|
+
use, offer to sell, sell, import, and otherwise transfer the Work,
|
|
79
|
+
where such license applies only to those patent claims licensable
|
|
80
|
+
by such Contributor that are necessarily infringed by their
|
|
81
|
+
Contribution(s) alone or by combination of their Contribution(s)
|
|
82
|
+
with the Work to which such Contribution(s) was submitted. If You
|
|
83
|
+
institute patent litigation against any entity (including a
|
|
84
|
+
cross-claim or counterclaim in a lawsuit) alleging that the Work
|
|
85
|
+
or a Contribution incorporated within the Work constitutes direct
|
|
86
|
+
or contributory patent infringement, then any patent licenses
|
|
87
|
+
granted to You under this License for that Work shall terminate
|
|
88
|
+
as of the date such litigation is filed.
|
|
89
|
+
|
|
90
|
+
4. Redistribution. You may reproduce and distribute copies of the
|
|
91
|
+
Work or Derivative Works thereof in any medium, with or without
|
|
92
|
+
modifications, and in Source or Object form, provided that You
|
|
93
|
+
meet the following conditions:
|
|
94
|
+
|
|
95
|
+
(a) You must give any other recipients of the Work or
|
|
96
|
+
Derivative Works a copy of this License; and
|
|
97
|
+
|
|
98
|
+
(b) You must cause any modified files to carry prominent notices
|
|
99
|
+
stating that You changed the files; and
|
|
100
|
+
|
|
101
|
+
(c) You must retain, in the Source form of any Derivative Works
|
|
102
|
+
that You distribute, all copyright, patent, trademark, and
|
|
103
|
+
attribution notices from the Source form of the Work,
|
|
104
|
+
excluding those notices that do not pertain to any part of
|
|
105
|
+
the Derivative Works; and
|
|
106
|
+
|
|
107
|
+
(d) If the Work includes a "NOTICE" text file as part of its
|
|
108
|
+
distribution, then any Derivative Works that You distribute must
|
|
109
|
+
include a readable copy of the attribution notices contained
|
|
110
|
+
within such NOTICE file, excluding those notices that do not
|
|
111
|
+
pertain to any part of the Derivative Works, in at least one
|
|
112
|
+
of the following places: within a NOTICE text file distributed
|
|
113
|
+
as part of the Derivative Works; within the Source form or
|
|
114
|
+
documentation, if provided along with the Derivative Works; or,
|
|
115
|
+
within a display generated by the Derivative Works, if and
|
|
116
|
+
wherever such third-party notices normally appear. The contents
|
|
117
|
+
of the NOTICE file are for informational purposes only and
|
|
118
|
+
do not modify the License. You may add Your own attribution
|
|
119
|
+
notices within Derivative Works that You distribute, alongside
|
|
120
|
+
or as an addendum to the NOTICE text from the Work, provided
|
|
121
|
+
that such additional attribution notices cannot be construed
|
|
122
|
+
as modifying the License.
|
|
123
|
+
|
|
124
|
+
You may add Your own copyright statement to Your modifications and
|
|
125
|
+
may provide additional or different license terms and conditions
|
|
126
|
+
for use, reproduction, or distribution of Your modifications, or
|
|
127
|
+
for any such Derivative Works as a whole, provided Your use,
|
|
128
|
+
reproduction, and distribution of the Work otherwise complies with
|
|
129
|
+
the conditions stated in this License.
|
|
130
|
+
|
|
131
|
+
5. Submission of Contributions. Unless You explicitly state otherwise,
|
|
132
|
+
any Contribution intentionally submitted for inclusion in the Work
|
|
133
|
+
by You to the Licensor shall be under the terms and conditions of
|
|
134
|
+
this License, without any additional terms or conditions.
|
|
135
|
+
Notwithstanding the above, nothing herein shall supersede or modify
|
|
136
|
+
the terms of any separate license agreement you may have executed
|
|
137
|
+
with Licensor regarding such Contributions.
|
|
138
|
+
|
|
139
|
+
6. Trademarks. This License does not grant permission to use the trade
|
|
140
|
+
names, trademarks, service marks, or product names of the Licensor,
|
|
141
|
+
except as required for reasonable and customary use in describing the
|
|
142
|
+
origin of the Work and reproducing the content of the NOTICE file.
|
|
143
|
+
|
|
144
|
+
7. Disclaimer of Warranty. Unless required by applicable law or
|
|
145
|
+
agreed to in writing, Licensor provides the Work (and each
|
|
146
|
+
Contributor provides its Contributions) on an "AS IS" BASIS,
|
|
147
|
+
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or
|
|
148
|
+
implied, including, without limitation, any warranties or conditions
|
|
149
|
+
of TITLE, NON-INFRINGEMENT, MERCHANTABILITY, or FITNESS FOR A
|
|
150
|
+
PARTICULAR PURPOSE. You are solely responsible for determining the
|
|
151
|
+
appropriateness of using or redistributing the Work and assume any
|
|
152
|
+
risks associated with Your exercise of permissions under this License.
|
|
153
|
+
|
|
154
|
+
8. Limitation of Liability. In no event and under no legal theory,
|
|
155
|
+
whether in tort (including negligence), contract, or otherwise,
|
|
156
|
+
unless required by applicable law (such as deliberate and grossly
|
|
157
|
+
negligent acts) or agreed to in writing, shall any Contributor be
|
|
158
|
+
liable to You for damages, including any direct, indirect, special,
|
|
159
|
+
incidental, or consequential damages of any character arising as a
|
|
160
|
+
result of this License or out of the use or inability to use the
|
|
161
|
+
Work (including but not limited to damages for loss of goodwill,
|
|
162
|
+
work stoppage, computer failure or malfunction, or any and all
|
|
163
|
+
other commercial damages or losses), even if such Contributor
|
|
164
|
+
has been advised of the possibility of such damages.
|
|
165
|
+
|
|
166
|
+
9. Accepting Warranty or Additional Liability. While redistributing
|
|
167
|
+
the Work or Derivative Works thereof, You may choose to offer,
|
|
168
|
+
and charge a fee for, acceptance of support, warranty, indemnity,
|
|
169
|
+
or other liability obligations and/or rights consistent with this
|
|
170
|
+
License. However, in accepting such obligations, You may act only
|
|
171
|
+
on Your own behalf and on Your sole responsibility, not on behalf
|
|
172
|
+
of any other Contributor, and only if You agree to indemnify,
|
|
173
|
+
defend, and hold each Contributor harmless for any liability
|
|
174
|
+
incurred by, or claims asserted against, such Contributor by reason
|
|
175
|
+
of your accepting any such warranty or additional liability.
|
|
176
|
+
|
|
177
|
+
END OF TERMS AND CONDITIONS
|
|
178
|
+
|
|
179
|
+
APPENDIX: How to apply the Apache License to your work.
|
|
180
|
+
|
|
181
|
+
To apply the Apache License to your work, attach the following
|
|
182
|
+
boilerplate notice, with the fields enclosed by brackets "[]"
|
|
183
|
+
replaced with your own identifying information. (Don't include
|
|
184
|
+
the brackets!) The text should be enclosed in the appropriate
|
|
185
|
+
comment syntax for the file format. We also recommend that a
|
|
186
|
+
file or class name and description of purpose be included on the
|
|
187
|
+
same "printed page" as the copyright notice for easier
|
|
188
|
+
identification within third-party archives.
|
|
189
|
+
|
|
190
|
+
Copyright 2026 Josias Lang-Ritter, Christopher Bowden, Seyed Hossein Hosseini, Henrikki Tenkanen, Timothy Foster
|
|
191
|
+
|
|
192
|
+
Licensed under the Apache License, Version 2.0 (the "License");
|
|
193
|
+
you may not use this file except in compliance with the License.
|
|
194
|
+
You may obtain a copy of the License at
|
|
195
|
+
|
|
196
|
+
http://www.apache.org/licenses/LICENSE-2.0
|
|
197
|
+
|
|
198
|
+
Unless required by applicable law or agreed to in writing, software
|
|
199
|
+
distributed under the License is distributed on an "AS IS" BASIS,
|
|
200
|
+
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
|
201
|
+
See the License for the specific language governing permissions and
|
|
202
|
+
limitations under the License.
|
|
@@ -0,0 +1,172 @@
|
|
|
1
|
+
Metadata-Version: 2.4
|
|
2
|
+
Name: geoaquacrop
|
|
3
|
+
Version: 0.1.0
|
|
4
|
+
Summary: Unified entry point to the GeoAquaCrop toolchain: preprocessing, gridded simulation, and visualisation
|
|
5
|
+
Author: Josias Lang-Ritter, Chris Bowden, Seyed Hossein Hosseini, Henrikki Tenkanen, Tim Foster
|
|
6
|
+
Maintainer-email: Josias Lang-Ritter <josias.lang-ritter@aalto.fi>, Chris Bowden <christopher.bowden@manchester.ac.uk>, Seyed Hossein Hosseini <seyed.h.hosseini@aalto.fi>
|
|
7
|
+
License-Expression: Apache-2.0
|
|
8
|
+
Project-URL: Homepage, https://github.com/aquacropos/geoaquacrop
|
|
9
|
+
Project-URL: Documentation, https://geoaquacrop.readthedocs.io
|
|
10
|
+
Project-URL: Preprocessing, https://github.com/aquacropos/geoaquacrop_preprocess
|
|
11
|
+
Project-URL: Simulation, https://github.com/aquacropos/geoaquacrop_simulate
|
|
12
|
+
Project-URL: Visualization, https://github.com/aquacropos/geoaquacrop_visualize
|
|
13
|
+
Keywords: aquacrop,crop model,water productivity,gridded,agriculture
|
|
14
|
+
Classifier: Development Status :: 4 - Beta
|
|
15
|
+
Classifier: Intended Audience :: Science/Research
|
|
16
|
+
Classifier: Programming Language :: Python :: 3
|
|
17
|
+
Classifier: Programming Language :: Python :: 3.11
|
|
18
|
+
Classifier: Topic :: Scientific/Engineering :: Hydrology
|
|
19
|
+
Requires-Python: >=3.11
|
|
20
|
+
Description-Content-Type: text/markdown
|
|
21
|
+
License-File: LICENSE
|
|
22
|
+
Requires-Dist: geoaquacrop_preprocess>=0.1
|
|
23
|
+
Requires-Dist: geoaquacrop_simulate>=0.1
|
|
24
|
+
Requires-Dist: geoaquacrop_visualize>=0.1
|
|
25
|
+
Provides-Extra: docs
|
|
26
|
+
Requires-Dist: sphinx>=7; extra == "docs"
|
|
27
|
+
Requires-Dist: furo; extra == "docs"
|
|
28
|
+
Dynamic: license-file
|
|
29
|
+
|
|
30
|
+
# GeoAquaCrop
|
|
31
|
+
|
|
32
|
+
> Run AquaCrop-OSPy over large regions in gridded format — from raw global datasets to interactive results.
|
|
33
|
+
|
|
34
|
+
 
|
|
35
|
+
|
|
36
|
+
## One import, three stages
|
|
37
|
+
|
|
38
|
+
```python
|
|
39
|
+
import geoaquacrop as gac
|
|
40
|
+
|
|
41
|
+
gac.preprocess.run(...) # download & harmonise the input datasets
|
|
42
|
+
gac.simulate.run(...) # run AquaCrop for every grid cell
|
|
43
|
+
gac.visualize.run() # explore the results
|
|
44
|
+
```
|
|
45
|
+
|
|
46
|
+
That is the whole API. Each stage is a separately maintained package, but you
|
|
47
|
+
never need to know their names: `geoaquacrop` presents them as one library.
|
|
48
|
+
|
|
49
|
+
```
|
|
50
|
+
gac.preprocess -> gac.simulate -> gac.visualize
|
|
51
|
+
```
|
|
52
|
+
|
|
53
|
+
| Stage | What it does | Documentation |
|
|
54
|
+
| ----- | ------------ | ------------- |
|
|
55
|
+
| `gac.preprocess` | Downloads and harmonises climate, soil, crop calendar and crop area data onto a common grid for a given polygon and period | [readthedocs](https://geoaquacrop-preprocessing.readthedocs.io/en/stable/) |
|
|
56
|
+
| `gac.simulate` | Runs AquaCrop per grid cell in parallel; optional yield bias-correction and calibration against observations | [readthedocs](https://geoaquacrop-simulate.readthedocs.io) |
|
|
57
|
+
| `gac.visualize` | Interactive Dash/Plotly dashboard for exploring simulation outputs and climate inputs | [readthedocs](https://geoaquacrop-visualize.readthedocs.io/en/latest/) |
|
|
58
|
+
|
|
59
|
+
## Installation
|
|
60
|
+
|
|
61
|
+
```bash
|
|
62
|
+
conda create -n geoaquacrop python=3.11
|
|
63
|
+
conda activate geoaquacrop
|
|
64
|
+
python -m pip install --pre geoaquacrop
|
|
65
|
+
```
|
|
66
|
+
|
|
67
|
+
The `--pre` flag is needed while the toolchain is in beta (`0.1.0b1`); pip skips
|
|
68
|
+
pre-release versions otherwise. This installs all three stages.
|
|
69
|
+
|
|
70
|
+
**For past climate data** you also need a free [Copernicus CDS account](https://cds.climate.copernicus.eu/)
|
|
71
|
+
and API token — see the preprocessing documentation.
|
|
72
|
+
|
|
73
|
+
<details>
|
|
74
|
+
<summary>Installing a single stage</summary>
|
|
75
|
+
|
|
76
|
+
Each stage also works standalone, with the same function names:
|
|
77
|
+
|
|
78
|
+
```bash
|
|
79
|
+
python -m pip install geoaquacrop_preprocess # data preparation only
|
|
80
|
+
python -m pip install geoaquacrop_simulate # simulation only
|
|
81
|
+
python -m pip install geoaquacrop_visualize # visualisation only
|
|
82
|
+
```
|
|
83
|
+
|
|
84
|
+
```python
|
|
85
|
+
import geoaquacrop_simulate as simulate
|
|
86
|
+
summary_file, daily_file = simulate.run(data_path='...', start_date='...',
|
|
87
|
+
end_date='...', crop='Wheat_winter')
|
|
88
|
+
```
|
|
89
|
+
|
|
90
|
+
`gac.simulate.run` and `geoaquacrop_simulate.run` are the same function, so
|
|
91
|
+
code written against either keeps working.
|
|
92
|
+
</details>
|
|
93
|
+
|
|
94
|
+
## End-to-end example
|
|
95
|
+
|
|
96
|
+
A complete run for one region, using only `gac`.
|
|
97
|
+
|
|
98
|
+
```python
|
|
99
|
+
import geoaquacrop as gac
|
|
100
|
+
|
|
101
|
+
# 1. prepare the input data
|
|
102
|
+
gac.preprocess.run(
|
|
103
|
+
domain_shape_path='high_plains.geojson', # polygon, EPSG:4326
|
|
104
|
+
start_year=2011,
|
|
105
|
+
end_year=2013,
|
|
106
|
+
api_token='your-copernicus-api-token',
|
|
107
|
+
cell_resolution=0.05,
|
|
108
|
+
workingdirectory='/data/high_plains',
|
|
109
|
+
)
|
|
110
|
+
|
|
111
|
+
# 2. run the simulation
|
|
112
|
+
summary_file, daily_file = gac.simulate.run(
|
|
113
|
+
data_path='/data/high_plains/processed', # fills all four input paths
|
|
114
|
+
start_date='2011/01/01',
|
|
115
|
+
end_date='2013/12/31',
|
|
116
|
+
crop='Wheat_winter',
|
|
117
|
+
irrigation='rainfed',
|
|
118
|
+
output_dir='outputs',
|
|
119
|
+
)
|
|
120
|
+
|
|
121
|
+
# 3. explore the results
|
|
122
|
+
gac.visualize.run() # then open http://localhost:8050
|
|
123
|
+
```
|
|
124
|
+
|
|
125
|
+
## What each stage offers
|
|
126
|
+
|
|
127
|
+
```python
|
|
128
|
+
gac.preprocess.run(...) # prepare every dataset
|
|
129
|
+
gac.preprocess.weather(...) # or re-run a single step
|
|
130
|
+
gac.preprocess.soil(...)
|
|
131
|
+
gac.preprocess.crop_calendar(...)
|
|
132
|
+
gac.preprocess.crop_area(...)
|
|
133
|
+
|
|
134
|
+
gac.simulate.run(data_path=..., ...) # simulate; returns (summary, daily)
|
|
135
|
+
gac.simulate.example_config() # inspect every available setting
|
|
136
|
+
gac.simulate.input_requirements() # print required files and units
|
|
137
|
+
gac.simulate.build_reference(...) # per-year, region-level yield reference
|
|
138
|
+
gac.simulate.correct(config) # bias-correct a saved run, no re-run
|
|
139
|
+
gac.simulate.compare([...]) # comparison figures and statistics
|
|
140
|
+
gac.simulate.load_results(path) # saved results as tidy per-year points
|
|
141
|
+
|
|
142
|
+
gac.visualize.run() # start the dashboard
|
|
143
|
+
```
|
|
144
|
+
|
|
145
|
+
Importing `geoaquacrop` is cheap: each stage — and its dependencies — loads only
|
|
146
|
+
when you first use it. If a stage is not installed, calling it tells you exactly
|
|
147
|
+
what to install.
|
|
148
|
+
|
|
149
|
+
## Which stage do I need?
|
|
150
|
+
|
|
151
|
+
- **Model outputs for a region, starting from nothing** — all three.
|
|
152
|
+
- **Already have gridded climate, soil and crop inputs** — `gac.simulate` alone.
|
|
153
|
+
- **Already have simulation outputs** — `gac.visualize` alone.
|
|
154
|
+
|
|
155
|
+
## Documentation
|
|
156
|
+
|
|
157
|
+
- **This toolchain** — <https://geoaquacrop.readthedocs.io>
|
|
158
|
+
- **Preprocessing** — <https://geoaquacrop-preprocessing.readthedocs.io/en/stable/>
|
|
159
|
+
- **Simulation** — <https://geoaquacrop-simulate.readthedocs.io>
|
|
160
|
+
- **Visualisation** — <https://geoaquacrop-visualize.readthedocs.io/en/latest/>
|
|
161
|
+
|
|
162
|
+
Contributors: see [the stage package standard](https://geoaquacrop.readthedocs.io/en/latest/standard.html)
|
|
163
|
+
for the naming and API contract each stage follows.
|
|
164
|
+
|
|
165
|
+
## Citation
|
|
166
|
+
|
|
167
|
+
If you use GeoAquaCrop in published work, please cite the toolchain and the
|
|
168
|
+
underlying [AquaCrop-OSPy](https://github.com/aquacropos/aquacrop) model.
|
|
169
|
+
|
|
170
|
+
## License
|
|
171
|
+
|
|
172
|
+
Apache-2.0 — see [LICENSE](LICENSE).
|
|
@@ -0,0 +1,143 @@
|
|
|
1
|
+
# GeoAquaCrop
|
|
2
|
+
|
|
3
|
+
> Run AquaCrop-OSPy over large regions in gridded format — from raw global datasets to interactive results.
|
|
4
|
+
|
|
5
|
+
 
|
|
6
|
+
|
|
7
|
+
## One import, three stages
|
|
8
|
+
|
|
9
|
+
```python
|
|
10
|
+
import geoaquacrop as gac
|
|
11
|
+
|
|
12
|
+
gac.preprocess.run(...) # download & harmonise the input datasets
|
|
13
|
+
gac.simulate.run(...) # run AquaCrop for every grid cell
|
|
14
|
+
gac.visualize.run() # explore the results
|
|
15
|
+
```
|
|
16
|
+
|
|
17
|
+
That is the whole API. Each stage is a separately maintained package, but you
|
|
18
|
+
never need to know their names: `geoaquacrop` presents them as one library.
|
|
19
|
+
|
|
20
|
+
```
|
|
21
|
+
gac.preprocess -> gac.simulate -> gac.visualize
|
|
22
|
+
```
|
|
23
|
+
|
|
24
|
+
| Stage | What it does | Documentation |
|
|
25
|
+
| ----- | ------------ | ------------- |
|
|
26
|
+
| `gac.preprocess` | Downloads and harmonises climate, soil, crop calendar and crop area data onto a common grid for a given polygon and period | [readthedocs](https://geoaquacrop-preprocessing.readthedocs.io/en/stable/) |
|
|
27
|
+
| `gac.simulate` | Runs AquaCrop per grid cell in parallel; optional yield bias-correction and calibration against observations | [readthedocs](https://geoaquacrop-simulate.readthedocs.io) |
|
|
28
|
+
| `gac.visualize` | Interactive Dash/Plotly dashboard for exploring simulation outputs and climate inputs | [readthedocs](https://geoaquacrop-visualize.readthedocs.io/en/latest/) |
|
|
29
|
+
|
|
30
|
+
## Installation
|
|
31
|
+
|
|
32
|
+
```bash
|
|
33
|
+
conda create -n geoaquacrop python=3.11
|
|
34
|
+
conda activate geoaquacrop
|
|
35
|
+
python -m pip install --pre geoaquacrop
|
|
36
|
+
```
|
|
37
|
+
|
|
38
|
+
The `--pre` flag is needed while the toolchain is in beta (`0.1.0b1`); pip skips
|
|
39
|
+
pre-release versions otherwise. This installs all three stages.
|
|
40
|
+
|
|
41
|
+
**For past climate data** you also need a free [Copernicus CDS account](https://cds.climate.copernicus.eu/)
|
|
42
|
+
and API token — see the preprocessing documentation.
|
|
43
|
+
|
|
44
|
+
<details>
|
|
45
|
+
<summary>Installing a single stage</summary>
|
|
46
|
+
|
|
47
|
+
Each stage also works standalone, with the same function names:
|
|
48
|
+
|
|
49
|
+
```bash
|
|
50
|
+
python -m pip install geoaquacrop_preprocess # data preparation only
|
|
51
|
+
python -m pip install geoaquacrop_simulate # simulation only
|
|
52
|
+
python -m pip install geoaquacrop_visualize # visualisation only
|
|
53
|
+
```
|
|
54
|
+
|
|
55
|
+
```python
|
|
56
|
+
import geoaquacrop_simulate as simulate
|
|
57
|
+
summary_file, daily_file = simulate.run(data_path='...', start_date='...',
|
|
58
|
+
end_date='...', crop='Wheat_winter')
|
|
59
|
+
```
|
|
60
|
+
|
|
61
|
+
`gac.simulate.run` and `geoaquacrop_simulate.run` are the same function, so
|
|
62
|
+
code written against either keeps working.
|
|
63
|
+
</details>
|
|
64
|
+
|
|
65
|
+
## End-to-end example
|
|
66
|
+
|
|
67
|
+
A complete run for one region, using only `gac`.
|
|
68
|
+
|
|
69
|
+
```python
|
|
70
|
+
import geoaquacrop as gac
|
|
71
|
+
|
|
72
|
+
# 1. prepare the input data
|
|
73
|
+
gac.preprocess.run(
|
|
74
|
+
domain_shape_path='high_plains.geojson', # polygon, EPSG:4326
|
|
75
|
+
start_year=2011,
|
|
76
|
+
end_year=2013,
|
|
77
|
+
api_token='your-copernicus-api-token',
|
|
78
|
+
cell_resolution=0.05,
|
|
79
|
+
workingdirectory='/data/high_plains',
|
|
80
|
+
)
|
|
81
|
+
|
|
82
|
+
# 2. run the simulation
|
|
83
|
+
summary_file, daily_file = gac.simulate.run(
|
|
84
|
+
data_path='/data/high_plains/processed', # fills all four input paths
|
|
85
|
+
start_date='2011/01/01',
|
|
86
|
+
end_date='2013/12/31',
|
|
87
|
+
crop='Wheat_winter',
|
|
88
|
+
irrigation='rainfed',
|
|
89
|
+
output_dir='outputs',
|
|
90
|
+
)
|
|
91
|
+
|
|
92
|
+
# 3. explore the results
|
|
93
|
+
gac.visualize.run() # then open http://localhost:8050
|
|
94
|
+
```
|
|
95
|
+
|
|
96
|
+
## What each stage offers
|
|
97
|
+
|
|
98
|
+
```python
|
|
99
|
+
gac.preprocess.run(...) # prepare every dataset
|
|
100
|
+
gac.preprocess.weather(...) # or re-run a single step
|
|
101
|
+
gac.preprocess.soil(...)
|
|
102
|
+
gac.preprocess.crop_calendar(...)
|
|
103
|
+
gac.preprocess.crop_area(...)
|
|
104
|
+
|
|
105
|
+
gac.simulate.run(data_path=..., ...) # simulate; returns (summary, daily)
|
|
106
|
+
gac.simulate.example_config() # inspect every available setting
|
|
107
|
+
gac.simulate.input_requirements() # print required files and units
|
|
108
|
+
gac.simulate.build_reference(...) # per-year, region-level yield reference
|
|
109
|
+
gac.simulate.correct(config) # bias-correct a saved run, no re-run
|
|
110
|
+
gac.simulate.compare([...]) # comparison figures and statistics
|
|
111
|
+
gac.simulate.load_results(path) # saved results as tidy per-year points
|
|
112
|
+
|
|
113
|
+
gac.visualize.run() # start the dashboard
|
|
114
|
+
```
|
|
115
|
+
|
|
116
|
+
Importing `geoaquacrop` is cheap: each stage — and its dependencies — loads only
|
|
117
|
+
when you first use it. If a stage is not installed, calling it tells you exactly
|
|
118
|
+
what to install.
|
|
119
|
+
|
|
120
|
+
## Which stage do I need?
|
|
121
|
+
|
|
122
|
+
- **Model outputs for a region, starting from nothing** — all three.
|
|
123
|
+
- **Already have gridded climate, soil and crop inputs** — `gac.simulate` alone.
|
|
124
|
+
- **Already have simulation outputs** — `gac.visualize` alone.
|
|
125
|
+
|
|
126
|
+
## Documentation
|
|
127
|
+
|
|
128
|
+
- **This toolchain** — <https://geoaquacrop.readthedocs.io>
|
|
129
|
+
- **Preprocessing** — <https://geoaquacrop-preprocessing.readthedocs.io/en/stable/>
|
|
130
|
+
- **Simulation** — <https://geoaquacrop-simulate.readthedocs.io>
|
|
131
|
+
- **Visualisation** — <https://geoaquacrop-visualize.readthedocs.io/en/latest/>
|
|
132
|
+
|
|
133
|
+
Contributors: see [the stage package standard](https://geoaquacrop.readthedocs.io/en/latest/standard.html)
|
|
134
|
+
for the naming and API contract each stage follows.
|
|
135
|
+
|
|
136
|
+
## Citation
|
|
137
|
+
|
|
138
|
+
If you use GeoAquaCrop in published work, please cite the toolchain and the
|
|
139
|
+
underlying [AquaCrop-OSPy](https://github.com/aquacropos/aquacrop) model.
|
|
140
|
+
|
|
141
|
+
## License
|
|
142
|
+
|
|
143
|
+
Apache-2.0 — see [LICENSE](LICENSE).
|
|
@@ -0,0 +1,56 @@
|
|
|
1
|
+
[build-system]
|
|
2
|
+
requires = ["setuptools>=77"]
|
|
3
|
+
build-backend = "setuptools.build_meta"
|
|
4
|
+
|
|
5
|
+
[project]
|
|
6
|
+
name = "geoaquacrop"
|
|
7
|
+
version = "0.1.0"
|
|
8
|
+
description = "Unified entry point to the GeoAquaCrop toolchain: preprocessing, gridded simulation, and visualisation"
|
|
9
|
+
readme = "README.md"
|
|
10
|
+
requires-python = ">=3.11"
|
|
11
|
+
license = "Apache-2.0"
|
|
12
|
+
license-files = ["LICENSE"]
|
|
13
|
+
authors = [
|
|
14
|
+
{ name = "Josias Lang-Ritter" },
|
|
15
|
+
{ name = "Chris Bowden" },
|
|
16
|
+
{ name = "Seyed Hossein Hosseini" },
|
|
17
|
+
{ name = "Henrikki Tenkanen" },
|
|
18
|
+
{ name = "Tim Foster" },
|
|
19
|
+
]
|
|
20
|
+
maintainers = [
|
|
21
|
+
{ name = "Josias Lang-Ritter", email = "josias.lang-ritter@aalto.fi" },
|
|
22
|
+
{ name = "Chris Bowden", email = "christopher.bowden@manchester.ac.uk" },
|
|
23
|
+
{ name = "Seyed Hossein Hosseini", email = "seyed.h.hosseini@aalto.fi" },
|
|
24
|
+
]
|
|
25
|
+
keywords = ["aquacrop", "crop model", "water productivity", "gridded", "agriculture"]
|
|
26
|
+
|
|
27
|
+
classifiers = [
|
|
28
|
+
"Development Status :: 4 - Beta",
|
|
29
|
+
"Intended Audience :: Science/Research",
|
|
30
|
+
"Programming Language :: Python :: 3",
|
|
31
|
+
"Programming Language :: Python :: 3.11",
|
|
32
|
+
"Topic :: Scientific/Engineering :: Hydrology",
|
|
33
|
+
]
|
|
34
|
+
|
|
35
|
+
# The meta-package installs the three components. Version floors only, so each
|
|
36
|
+
# can be released independently without a coordinated bump here.
|
|
37
|
+
dependencies = [
|
|
38
|
+
"geoaquacrop_preprocess>=0.1",
|
|
39
|
+
"geoaquacrop_simulate>=0.1",
|
|
40
|
+
"geoaquacrop_visualize>=0.1",
|
|
41
|
+
]
|
|
42
|
+
|
|
43
|
+
[project.optional-dependencies]
|
|
44
|
+
docs = ["sphinx>=7", "furo"]
|
|
45
|
+
|
|
46
|
+
[project.urls]
|
|
47
|
+
Homepage = "https://github.com/aquacropos/geoaquacrop"
|
|
48
|
+
Documentation = "https://geoaquacrop.readthedocs.io"
|
|
49
|
+
Preprocessing = "https://github.com/aquacropos/geoaquacrop_preprocess"
|
|
50
|
+
Simulation = "https://github.com/aquacropos/geoaquacrop_simulate"
|
|
51
|
+
Visualization = "https://github.com/aquacropos/geoaquacrop_visualize"
|
|
52
|
+
|
|
53
|
+
# The umbrella ships the `geoaquacrop` façade package (a thin, lazily-imported
|
|
54
|
+
# wrapper over the three stage packages) plus the dependency metadata.
|
|
55
|
+
[tool.setuptools.packages.find]
|
|
56
|
+
where = ["src"]
|
|
@@ -0,0 +1,38 @@
|
|
|
1
|
+
"""GeoAquaCrop — gridded FAO AquaCrop from raw data to results.
|
|
2
|
+
|
|
3
|
+
A single, stable entry point to the three toolchain packages::
|
|
4
|
+
|
|
5
|
+
import geoaquacrop as gac
|
|
6
|
+
|
|
7
|
+
gac.preprocess.run(...) # download & harmonise input datasets
|
|
8
|
+
gac.simulate.run(config) # simulate every grid cell
|
|
9
|
+
gac.visualize.run(...) # explore the results
|
|
10
|
+
|
|
11
|
+
Each stage is also installable and usable on its own
|
|
12
|
+
(``geoaquacrop_preprocess``, ``geoaquacrop_simulate``, ``geoaquacrop_visualize``);
|
|
13
|
+
this package is a thin, curated façade over them, so the names here stay
|
|
14
|
+
stable even if the internals move.
|
|
15
|
+
|
|
16
|
+
Submodules are imported lazily: ``import geoaquacrop`` is cheap, and the heavy
|
|
17
|
+
dependencies of a stage are only loaded when you first touch that stage.
|
|
18
|
+
"""
|
|
19
|
+
from importlib import import_module as _import_module
|
|
20
|
+
|
|
21
|
+
__all__ = ["preprocess", "simulate", "visualize"]
|
|
22
|
+
__version__ = "0.1.0b1"
|
|
23
|
+
|
|
24
|
+
_SUBMODULES = frozenset(__all__)
|
|
25
|
+
|
|
26
|
+
|
|
27
|
+
def __getattr__(name):
|
|
28
|
+
"""Import a stage on first use (PEP 562)."""
|
|
29
|
+
if name in _SUBMODULES:
|
|
30
|
+
module = _import_module(f"{__name__}.{name}")
|
|
31
|
+
globals()[name] = module
|
|
32
|
+
return module
|
|
33
|
+
raise AttributeError(f"module {__name__!r} has no attribute {name!r}")
|
|
34
|
+
|
|
35
|
+
|
|
36
|
+
def __dir__():
|
|
37
|
+
public = [k for k in globals() if not k.startswith("_")]
|
|
38
|
+
return sorted(set(public) | _SUBMODULES)
|
|
@@ -0,0 +1,87 @@
|
|
|
1
|
+
"""Shared helper for the stage façades."""
|
|
2
|
+
from importlib import import_module
|
|
3
|
+
|
|
4
|
+
# stage -> (distribution name, import name, purpose)
|
|
5
|
+
|
|
6
|
+
STAGES = {
|
|
7
|
+
"preprocess": {
|
|
8
|
+
"distribution": "geoaquacrop_preprocess",
|
|
9
|
+
"module": "geoaquacrop_preprocess",
|
|
10
|
+
"purpose": "input data preparation",
|
|
11
|
+
},
|
|
12
|
+
"simulate": {
|
|
13
|
+
"distribution": "geoaquacrop_simulate",
|
|
14
|
+
"module": "geoaquacrop_simulate",
|
|
15
|
+
"purpose": "gridded simulation",
|
|
16
|
+
},
|
|
17
|
+
"visualize": {
|
|
18
|
+
"distribution": "geoaquacrop_visualize",
|
|
19
|
+
"module": "geoaquacrop_visualize",
|
|
20
|
+
"purpose": "result visualisation",
|
|
21
|
+
},
|
|
22
|
+
}
|
|
23
|
+
|
|
24
|
+
|
|
25
|
+
def require(stage):
|
|
26
|
+
"""Import the package behind a stage, or explain how to install it.
|
|
27
|
+
|
|
28
|
+
Parameters
|
|
29
|
+
----------
|
|
30
|
+
stage : str
|
|
31
|
+
One of ``"preprocess"``, ``"simulate"``, ``"visualize"``.
|
|
32
|
+
|
|
33
|
+
Returns
|
|
34
|
+
-------
|
|
35
|
+
module
|
|
36
|
+
The imported stage package.
|
|
37
|
+
|
|
38
|
+
Raises
|
|
39
|
+
------
|
|
40
|
+
ImportError
|
|
41
|
+
If the stage is not installed, with the command needed to install it.
|
|
42
|
+
"""
|
|
43
|
+
spec = STAGES[stage]
|
|
44
|
+
try:
|
|
45
|
+
return import_module(spec["module"])
|
|
46
|
+
except ImportError as exc:
|
|
47
|
+
raise ImportError(
|
|
48
|
+
f"{spec['distribution']} is required for {spec['purpose']} but is "
|
|
49
|
+
f"not installed.\n"
|
|
50
|
+
f" python -m pip install {spec['distribution']}\n"
|
|
51
|
+
f"or install the whole toolchain with:\n"
|
|
52
|
+
f" python -m pip install geoaquacrop"
|
|
53
|
+
) from exc
|
|
54
|
+
|
|
55
|
+
|
|
56
|
+
def delegate(stage, name):
|
|
57
|
+
"""Return the callable a stage package exports under ``name``.
|
|
58
|
+
|
|
59
|
+
Stage packages export their public API at package level (see the stage
|
|
60
|
+
standard), so the façade looks up exactly one name and fails loudly if it
|
|
61
|
+
is absent or not callable.
|
|
62
|
+
|
|
63
|
+
Parameters
|
|
64
|
+
----------
|
|
65
|
+
stage : str
|
|
66
|
+
One of ``"preprocess"``, ``"simulate"``, ``"visualize"``.
|
|
67
|
+
name : str
|
|
68
|
+
The attribute to fetch from that stage package.
|
|
69
|
+
|
|
70
|
+
Returns
|
|
71
|
+
-------
|
|
72
|
+
callable
|
|
73
|
+
|
|
74
|
+
Raises
|
|
75
|
+
------
|
|
76
|
+
AttributeError
|
|
77
|
+
If the stage package does not export ``name`` as a callable.
|
|
78
|
+
"""
|
|
79
|
+
pkg = require(stage)
|
|
80
|
+
fn = getattr(pkg, name, None)
|
|
81
|
+
if not callable(fn):
|
|
82
|
+
exported = ", ".join(sorted(getattr(pkg, "__all__", []))) or "nothing"
|
|
83
|
+
raise AttributeError(
|
|
84
|
+
f"{pkg.__name__} does not export a callable {name!r}. "
|
|
85
|
+
f"It exports: {exported}. See the GeoAquaCrop stage standard."
|
|
86
|
+
)
|
|
87
|
+
return fn
|
|
@@ -0,0 +1,44 @@
|
|
|
1
|
+
"""Input data preparation — :mod:`geoaquacrop.preprocess`.
|
|
2
|
+
|
|
3
|
+
Façade over the ``geoaquacrop_preprocess`` package::
|
|
4
|
+
|
|
5
|
+
import geoaquacrop as gac
|
|
6
|
+
|
|
7
|
+
gac.preprocess.run(domain_shape_path='region.geojson', start_year=2011,
|
|
8
|
+
end_year=2013, api_token='...', cell_resolution=0.05,
|
|
9
|
+
workingdirectory='/data/region')
|
|
10
|
+
|
|
11
|
+
:func:`run` prepares every dataset a simulation needs. The per-dataset helpers
|
|
12
|
+
re-run a single step; each requires the stage package to export that step at
|
|
13
|
+
package level (see the stage standard), and raises an explicit error if the
|
|
14
|
+
installed version does not.
|
|
15
|
+
"""
|
|
16
|
+
from ._util import delegate
|
|
17
|
+
|
|
18
|
+
__all__ = ["run", "weather", "soil", "crop_calendar", "crop_area"]
|
|
19
|
+
|
|
20
|
+
|
|
21
|
+
def run(*args, **kwargs):
|
|
22
|
+
"""Download and harmonise every input dataset for a domain and period."""
|
|
23
|
+
return delegate("preprocess", "run")(
|
|
24
|
+
*args, **kwargs)
|
|
25
|
+
|
|
26
|
+
|
|
27
|
+
def weather(*args, **kwargs):
|
|
28
|
+
"""Prepare the climate inputs only."""
|
|
29
|
+
return delegate("preprocess", "weather")(*args, **kwargs)
|
|
30
|
+
|
|
31
|
+
|
|
32
|
+
def soil(*args, **kwargs):
|
|
33
|
+
"""Prepare the soil inputs only."""
|
|
34
|
+
return delegate("preprocess", "soil")(*args, **kwargs)
|
|
35
|
+
|
|
36
|
+
|
|
37
|
+
def crop_calendar(*args, **kwargs):
|
|
38
|
+
"""Prepare the crop calendar (planting day, season length) only."""
|
|
39
|
+
return delegate("preprocess", "crop_calendar")(*args, **kwargs)
|
|
40
|
+
|
|
41
|
+
|
|
42
|
+
def crop_area(*args, **kwargs):
|
|
43
|
+
"""Prepare the crop area mask only."""
|
|
44
|
+
return delegate("preprocess", "crop_area")(*args, **kwargs)
|
|
@@ -0,0 +1,85 @@
|
|
|
1
|
+
"""Gridded AquaCrop simulation — :mod:`geoaquacrop.simulate`.
|
|
2
|
+
|
|
3
|
+
Façade over the ``geoaquacrop_simulate`` package::
|
|
4
|
+
|
|
5
|
+
import geoaquacrop as gac
|
|
6
|
+
|
|
7
|
+
summary_file, daily_file = gac.simulate.run(
|
|
8
|
+
data_path='/data/region/processed',
|
|
9
|
+
start_date='2011/01/01', end_date='2013/12/31',
|
|
10
|
+
crop='Wheat_winter', irrigation='rainfed')
|
|
11
|
+
|
|
12
|
+
Every name here is re-exported from ``geoaquacrop_simulate``; the two are
|
|
13
|
+
interchangeable, so code written against either keeps working.
|
|
14
|
+
"""
|
|
15
|
+
from ._util import delegate, require
|
|
16
|
+
|
|
17
|
+
__all__ = ["run", "example_config", "input_requirements", "build_reference",
|
|
18
|
+
"correct", "compare", "load_results"]
|
|
19
|
+
|
|
20
|
+
|
|
21
|
+
def run(config=None, **kwargs):
|
|
22
|
+
"""Run a simulation for every cell in the domain.
|
|
23
|
+
|
|
24
|
+
Settings are given as keyword arguments::
|
|
25
|
+
|
|
26
|
+
gac.simulate.run(data_path='/data/region/processed',
|
|
27
|
+
start_date='2011/01/01', end_date='2013/12/31',
|
|
28
|
+
crop='Wheat_winter', irrigation='rainfed')
|
|
29
|
+
|
|
30
|
+
``data_path`` fills all four input paths at once. See
|
|
31
|
+
:func:`example_config` for every available setting, or the stage
|
|
32
|
+
documentation for the full reference.
|
|
33
|
+
|
|
34
|
+
Parameters
|
|
35
|
+
----------
|
|
36
|
+
config : dict, optional
|
|
37
|
+
A configuration dictionary to start from, for programmatic use; any
|
|
38
|
+
keyword argument overrides the matching entry.
|
|
39
|
+
**kwargs
|
|
40
|
+
Simulation settings such as ``data_path``, ``start_date``,
|
|
41
|
+
``end_date``, ``crop``, ``irrigation``, ``output_dir``, ``correction``.
|
|
42
|
+
|
|
43
|
+
Returns
|
|
44
|
+
-------
|
|
45
|
+
tuple
|
|
46
|
+
``(summary_file, daily_file)``, or ``(None, None)`` if the call only
|
|
47
|
+
corrected an already-saved run.
|
|
48
|
+
"""
|
|
49
|
+
return delegate("simulate", "run")(config, **kwargs)
|
|
50
|
+
|
|
51
|
+
|
|
52
|
+
def example_config():
|
|
53
|
+
"""Return the example configuration, to inspect the available settings.
|
|
54
|
+
|
|
55
|
+
Not a required step: :func:`run` takes the same settings as keyword
|
|
56
|
+
arguments. Useful for seeing every key and its default.
|
|
57
|
+
"""
|
|
58
|
+
return delegate("simulate", "example_config")()
|
|
59
|
+
|
|
60
|
+
|
|
61
|
+
def input_requirements():
|
|
62
|
+
"""Print the input files a simulation needs, with units and naming."""
|
|
63
|
+
return delegate("simulate", "input_requirements")()
|
|
64
|
+
|
|
65
|
+
|
|
66
|
+
def build_reference(**kwargs):
|
|
67
|
+
"""Build a per-year, region-level yield reference from a boundary file and
|
|
68
|
+
a statistics table."""
|
|
69
|
+
return delegate("simulate", "build_reference")(**kwargs)
|
|
70
|
+
|
|
71
|
+
|
|
72
|
+
def correct(config, logger=None):
|
|
73
|
+
"""Bias-correct or calibrate an already-saved run, without re-simulating."""
|
|
74
|
+
return delegate("simulate", "correct")(config, logger=logger)
|
|
75
|
+
|
|
76
|
+
|
|
77
|
+
def compare(args=None):
|
|
78
|
+
"""Compare corrected runs against the reference: per-year maps, region
|
|
79
|
+
difference maps, a domain time series and a statistics table."""
|
|
80
|
+
return delegate("simulate", "compare")(args)
|
|
81
|
+
|
|
82
|
+
|
|
83
|
+
def load_results(path, value_col="Dry yield (tonne/ha)", start_year=None):
|
|
84
|
+
"""Load a saved ``summary_results_*.pkl`` as tidy per-year points."""
|
|
85
|
+
return delegate("simulate", "load_results")(path, value_col, start_year)
|
|
@@ -0,0 +1,16 @@
|
|
|
1
|
+
"""Result visualisation — :mod:`geoaquacrop.visualize`.
|
|
2
|
+
|
|
3
|
+
Façade over the ``geoaquacrop_visualize`` package::
|
|
4
|
+
|
|
5
|
+
import geoaquacrop as gac
|
|
6
|
+
|
|
7
|
+
gac.visualize.run() # starts the dashboard, then open the printed URL
|
|
8
|
+
"""
|
|
9
|
+
from ._util import delegate
|
|
10
|
+
|
|
11
|
+
__all__ = ["run"]
|
|
12
|
+
|
|
13
|
+
|
|
14
|
+
def run(*args, **kwargs):
|
|
15
|
+
"""Start the interactive dashboard."""
|
|
16
|
+
return delegate("visualize", "run")(*args, **kwargs)
|
|
@@ -0,0 +1,172 @@
|
|
|
1
|
+
Metadata-Version: 2.4
|
|
2
|
+
Name: geoaquacrop
|
|
3
|
+
Version: 0.1.0
|
|
4
|
+
Summary: Unified entry point to the GeoAquaCrop toolchain: preprocessing, gridded simulation, and visualisation
|
|
5
|
+
Author: Josias Lang-Ritter, Chris Bowden, Seyed Hossein Hosseini, Henrikki Tenkanen, Tim Foster
|
|
6
|
+
Maintainer-email: Josias Lang-Ritter <josias.lang-ritter@aalto.fi>, Chris Bowden <christopher.bowden@manchester.ac.uk>, Seyed Hossein Hosseini <seyed.h.hosseini@aalto.fi>
|
|
7
|
+
License-Expression: Apache-2.0
|
|
8
|
+
Project-URL: Homepage, https://github.com/aquacropos/geoaquacrop
|
|
9
|
+
Project-URL: Documentation, https://geoaquacrop.readthedocs.io
|
|
10
|
+
Project-URL: Preprocessing, https://github.com/aquacropos/geoaquacrop_preprocess
|
|
11
|
+
Project-URL: Simulation, https://github.com/aquacropos/geoaquacrop_simulate
|
|
12
|
+
Project-URL: Visualization, https://github.com/aquacropos/geoaquacrop_visualize
|
|
13
|
+
Keywords: aquacrop,crop model,water productivity,gridded,agriculture
|
|
14
|
+
Classifier: Development Status :: 4 - Beta
|
|
15
|
+
Classifier: Intended Audience :: Science/Research
|
|
16
|
+
Classifier: Programming Language :: Python :: 3
|
|
17
|
+
Classifier: Programming Language :: Python :: 3.11
|
|
18
|
+
Classifier: Topic :: Scientific/Engineering :: Hydrology
|
|
19
|
+
Requires-Python: >=3.11
|
|
20
|
+
Description-Content-Type: text/markdown
|
|
21
|
+
License-File: LICENSE
|
|
22
|
+
Requires-Dist: geoaquacrop_preprocess>=0.1
|
|
23
|
+
Requires-Dist: geoaquacrop_simulate>=0.1
|
|
24
|
+
Requires-Dist: geoaquacrop_visualize>=0.1
|
|
25
|
+
Provides-Extra: docs
|
|
26
|
+
Requires-Dist: sphinx>=7; extra == "docs"
|
|
27
|
+
Requires-Dist: furo; extra == "docs"
|
|
28
|
+
Dynamic: license-file
|
|
29
|
+
|
|
30
|
+
# GeoAquaCrop
|
|
31
|
+
|
|
32
|
+
> Run AquaCrop-OSPy over large regions in gridded format — from raw global datasets to interactive results.
|
|
33
|
+
|
|
34
|
+
 
|
|
35
|
+
|
|
36
|
+
## One import, three stages
|
|
37
|
+
|
|
38
|
+
```python
|
|
39
|
+
import geoaquacrop as gac
|
|
40
|
+
|
|
41
|
+
gac.preprocess.run(...) # download & harmonise the input datasets
|
|
42
|
+
gac.simulate.run(...) # run AquaCrop for every grid cell
|
|
43
|
+
gac.visualize.run() # explore the results
|
|
44
|
+
```
|
|
45
|
+
|
|
46
|
+
That is the whole API. Each stage is a separately maintained package, but you
|
|
47
|
+
never need to know their names: `geoaquacrop` presents them as one library.
|
|
48
|
+
|
|
49
|
+
```
|
|
50
|
+
gac.preprocess -> gac.simulate -> gac.visualize
|
|
51
|
+
```
|
|
52
|
+
|
|
53
|
+
| Stage | What it does | Documentation |
|
|
54
|
+
| ----- | ------------ | ------------- |
|
|
55
|
+
| `gac.preprocess` | Downloads and harmonises climate, soil, crop calendar and crop area data onto a common grid for a given polygon and period | [readthedocs](https://geoaquacrop-preprocessing.readthedocs.io/en/stable/) |
|
|
56
|
+
| `gac.simulate` | Runs AquaCrop per grid cell in parallel; optional yield bias-correction and calibration against observations | [readthedocs](https://geoaquacrop-simulate.readthedocs.io) |
|
|
57
|
+
| `gac.visualize` | Interactive Dash/Plotly dashboard for exploring simulation outputs and climate inputs | [readthedocs](https://geoaquacrop-visualize.readthedocs.io/en/latest/) |
|
|
58
|
+
|
|
59
|
+
## Installation
|
|
60
|
+
|
|
61
|
+
```bash
|
|
62
|
+
conda create -n geoaquacrop python=3.11
|
|
63
|
+
conda activate geoaquacrop
|
|
64
|
+
python -m pip install --pre geoaquacrop
|
|
65
|
+
```
|
|
66
|
+
|
|
67
|
+
The `--pre` flag is needed while the toolchain is in beta (`0.1.0b1`); pip skips
|
|
68
|
+
pre-release versions otherwise. This installs all three stages.
|
|
69
|
+
|
|
70
|
+
**For past climate data** you also need a free [Copernicus CDS account](https://cds.climate.copernicus.eu/)
|
|
71
|
+
and API token — see the preprocessing documentation.
|
|
72
|
+
|
|
73
|
+
<details>
|
|
74
|
+
<summary>Installing a single stage</summary>
|
|
75
|
+
|
|
76
|
+
Each stage also works standalone, with the same function names:
|
|
77
|
+
|
|
78
|
+
```bash
|
|
79
|
+
python -m pip install geoaquacrop_preprocess # data preparation only
|
|
80
|
+
python -m pip install geoaquacrop_simulate # simulation only
|
|
81
|
+
python -m pip install geoaquacrop_visualize # visualisation only
|
|
82
|
+
```
|
|
83
|
+
|
|
84
|
+
```python
|
|
85
|
+
import geoaquacrop_simulate as simulate
|
|
86
|
+
summary_file, daily_file = simulate.run(data_path='...', start_date='...',
|
|
87
|
+
end_date='...', crop='Wheat_winter')
|
|
88
|
+
```
|
|
89
|
+
|
|
90
|
+
`gac.simulate.run` and `geoaquacrop_simulate.run` are the same function, so
|
|
91
|
+
code written against either keeps working.
|
|
92
|
+
</details>
|
|
93
|
+
|
|
94
|
+
## End-to-end example
|
|
95
|
+
|
|
96
|
+
A complete run for one region, using only `gac`.
|
|
97
|
+
|
|
98
|
+
```python
|
|
99
|
+
import geoaquacrop as gac
|
|
100
|
+
|
|
101
|
+
# 1. prepare the input data
|
|
102
|
+
gac.preprocess.run(
|
|
103
|
+
domain_shape_path='high_plains.geojson', # polygon, EPSG:4326
|
|
104
|
+
start_year=2011,
|
|
105
|
+
end_year=2013,
|
|
106
|
+
api_token='your-copernicus-api-token',
|
|
107
|
+
cell_resolution=0.05,
|
|
108
|
+
workingdirectory='/data/high_plains',
|
|
109
|
+
)
|
|
110
|
+
|
|
111
|
+
# 2. run the simulation
|
|
112
|
+
summary_file, daily_file = gac.simulate.run(
|
|
113
|
+
data_path='/data/high_plains/processed', # fills all four input paths
|
|
114
|
+
start_date='2011/01/01',
|
|
115
|
+
end_date='2013/12/31',
|
|
116
|
+
crop='Wheat_winter',
|
|
117
|
+
irrigation='rainfed',
|
|
118
|
+
output_dir='outputs',
|
|
119
|
+
)
|
|
120
|
+
|
|
121
|
+
# 3. explore the results
|
|
122
|
+
gac.visualize.run() # then open http://localhost:8050
|
|
123
|
+
```
|
|
124
|
+
|
|
125
|
+
## What each stage offers
|
|
126
|
+
|
|
127
|
+
```python
|
|
128
|
+
gac.preprocess.run(...) # prepare every dataset
|
|
129
|
+
gac.preprocess.weather(...) # or re-run a single step
|
|
130
|
+
gac.preprocess.soil(...)
|
|
131
|
+
gac.preprocess.crop_calendar(...)
|
|
132
|
+
gac.preprocess.crop_area(...)
|
|
133
|
+
|
|
134
|
+
gac.simulate.run(data_path=..., ...) # simulate; returns (summary, daily)
|
|
135
|
+
gac.simulate.example_config() # inspect every available setting
|
|
136
|
+
gac.simulate.input_requirements() # print required files and units
|
|
137
|
+
gac.simulate.build_reference(...) # per-year, region-level yield reference
|
|
138
|
+
gac.simulate.correct(config) # bias-correct a saved run, no re-run
|
|
139
|
+
gac.simulate.compare([...]) # comparison figures and statistics
|
|
140
|
+
gac.simulate.load_results(path) # saved results as tidy per-year points
|
|
141
|
+
|
|
142
|
+
gac.visualize.run() # start the dashboard
|
|
143
|
+
```
|
|
144
|
+
|
|
145
|
+
Importing `geoaquacrop` is cheap: each stage — and its dependencies — loads only
|
|
146
|
+
when you first use it. If a stage is not installed, calling it tells you exactly
|
|
147
|
+
what to install.
|
|
148
|
+
|
|
149
|
+
## Which stage do I need?
|
|
150
|
+
|
|
151
|
+
- **Model outputs for a region, starting from nothing** — all three.
|
|
152
|
+
- **Already have gridded climate, soil and crop inputs** — `gac.simulate` alone.
|
|
153
|
+
- **Already have simulation outputs** — `gac.visualize` alone.
|
|
154
|
+
|
|
155
|
+
## Documentation
|
|
156
|
+
|
|
157
|
+
- **This toolchain** — <https://geoaquacrop.readthedocs.io>
|
|
158
|
+
- **Preprocessing** — <https://geoaquacrop-preprocessing.readthedocs.io/en/stable/>
|
|
159
|
+
- **Simulation** — <https://geoaquacrop-simulate.readthedocs.io>
|
|
160
|
+
- **Visualisation** — <https://geoaquacrop-visualize.readthedocs.io/en/latest/>
|
|
161
|
+
|
|
162
|
+
Contributors: see [the stage package standard](https://geoaquacrop.readthedocs.io/en/latest/standard.html)
|
|
163
|
+
for the naming and API contract each stage follows.
|
|
164
|
+
|
|
165
|
+
## Citation
|
|
166
|
+
|
|
167
|
+
If you use GeoAquaCrop in published work, please cite the toolchain and the
|
|
168
|
+
underlying [AquaCrop-OSPy](https://github.com/aquacropos/aquacrop) model.
|
|
169
|
+
|
|
170
|
+
## License
|
|
171
|
+
|
|
172
|
+
Apache-2.0 — see [LICENSE](LICENSE).
|
|
@@ -0,0 +1,13 @@
|
|
|
1
|
+
LICENSE
|
|
2
|
+
README.md
|
|
3
|
+
pyproject.toml
|
|
4
|
+
src/geoaquacrop/__init__.py
|
|
5
|
+
src/geoaquacrop/_util.py
|
|
6
|
+
src/geoaquacrop/preprocess.py
|
|
7
|
+
src/geoaquacrop/simulate.py
|
|
8
|
+
src/geoaquacrop/visualize.py
|
|
9
|
+
src/geoaquacrop.egg-info/PKG-INFO
|
|
10
|
+
src/geoaquacrop.egg-info/SOURCES.txt
|
|
11
|
+
src/geoaquacrop.egg-info/dependency_links.txt
|
|
12
|
+
src/geoaquacrop.egg-info/requires.txt
|
|
13
|
+
src/geoaquacrop.egg-info/top_level.txt
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
geoaquacrop
|