gentroutils 1.6.0.dev1__tar.gz → 2.0.0__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (73) hide show
  1. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/.github/workflows/pr.yaml +10 -10
  2. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/CHANGELOG.md +24 -0
  3. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/PKG-INFO +1 -1
  4. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/pyproject.toml +1 -1
  5. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/uv.lock +1 -1
  6. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/.RData +0 -0
  7. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/.Rhistory +0 -0
  8. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/.github/workflows/labeler.yaml +0 -0
  9. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/.github/workflows/release.yaml +0 -0
  10. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/.github/workflows/release_pr.yaml +0 -0
  11. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/.github/workflows/tag.yaml +0 -0
  12. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/.gitignore +0 -0
  13. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/.pre-commit-config.yaml +0 -0
  14. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/.vscode/extensions.json +0 -0
  15. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/.vscode/settings.json +0 -0
  16. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/Dockerfile +0 -0
  17. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/LICENSE +0 -0
  18. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/Makefile +0 -0
  19. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/README.md +0 -0
  20. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/commitlint.config.js +0 -0
  21. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/config.yaml +0 -0
  22. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/conftest.py +0 -0
  23. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/docs/00_prepare_tables_for_curation.R +0 -0
  24. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/docs/gwas_catalog_curation.md +0 -0
  25. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/setup.sh +0 -0
  26. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/src/gentroutils/__init__.py +0 -0
  27. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/src/gentroutils/errors.py +0 -0
  28. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/src/gentroutils/io/path/__init__.py +0 -0
  29. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/src/gentroutils/io/path/ftp.py +0 -0
  30. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/src/gentroutils/io/path/gcs.py +0 -0
  31. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/src/gentroutils/io/transfer/__init__.py +0 -0
  32. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/src/gentroutils/io/transfer/ftp_to_gcs.py +0 -0
  33. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/src/gentroutils/io/transfer/model.py +0 -0
  34. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/src/gentroutils/io/transfer/polars_to_gcs.py +0 -0
  35. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/src/gentroutils/parsers/__init__.py +0 -0
  36. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/src/gentroutils/parsers/curation.py +0 -0
  37. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/src/gentroutils/py.typed +0 -0
  38. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/src/gentroutils/tasks/__init__.py +0 -0
  39. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/src/gentroutils/tasks/crawl.py +0 -0
  40. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/src/gentroutils/tasks/curation.py +0 -0
  41. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/src/gentroutils/tasks/fetch.py +0 -0
  42. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/src/gentroutils/transfer.py +0 -0
  43. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/tests/data/ftp/test/databases/gwas/summary_statistics/harmonised_list.txt +0 -0
  44. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/tests/data/gsutil_list.txt +0 -0
  45. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/tests/data/manual_curation/correct_curation.tsv +0 -0
  46. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/tests/data/manual_curation/incorrect_analysisFlag_type.tsv +0 -0
  47. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/tests/data/manual_curation/incorrect_analysisFlag_value.tsv +0 -0
  48. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/tests/data/manual_curation/incorrect_columns_curation.tsv +0 -0
  49. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/tests/data/manual_curation/incorrect_publicationTitle_type.tsv +0 -0
  50. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/tests/data/manual_curation/incorrect_pubmedId_type.tsv +0 -0
  51. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/tests/data/manual_curation/incorrect_studyId_type.tsv +0 -0
  52. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/tests/data/manual_curation/incorrect_studyId_value.tsv +0 -0
  53. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/tests/data/manual_curation/incorrect_studyType_type.tsv +0 -0
  54. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/tests/data/manual_curation/incorrect_studyType_value.tsv +0 -0
  55. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/tests/data/manual_curation/incorrect_traitFromSource_type.tsv +0 -0
  56. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/tests/data/manual_curation/non_unique_studyId.tsv +0 -0
  57. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/tests/data/manual_curation/null_value_in_studyId.tsv +0 -0
  58. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/tests/data/test.h.tsv.gz +0 -0
  59. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/tests/io/conftest.py +0 -0
  60. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/tests/io/path/conftest.py +0 -0
  61. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/tests/io/path/test_ftp.py +0 -0
  62. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/tests/io/path/test_gcs.py +0 -0
  63. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/tests/io/transfer/conftest.py +0 -0
  64. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/tests/io/transfer/test_ftp_to_gcs.py +0 -0
  65. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/tests/io/transfer/test_model.py +0 -0
  66. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/tests/io/transfer/test_polars_to_gcs.py +0 -0
  67. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/tests/parsers/conftest.py +0 -0
  68. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/tests/parsers/test_curation.py +0 -0
  69. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/tests/tasks/conftest.py +0 -0
  70. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/tests/tasks/test_crawl_task.py +0 -0
  71. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/tests/tasks/test_curation_task.py +0 -0
  72. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/tests/tasks/test_fetch_task.py +0 -0
  73. {gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/tests/test_transfer.py +0 -0
{gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/.github/workflows/pr.yaml RENAMED
@@ -13,18 +13,18 @@ jobs:
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  strategy:
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  max-parallel: 2
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  matrix:
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- python-version: ["3.10", "3.11", "3.12"]
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+ python-version: ["3.13"]
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  command: ["test", "type-check", "dep-check", "lint"]
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  # Skip redundant checks.
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- exclude:
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- - command: "lint"
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- python-version: "3.11"
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- - command: "lint"
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- python-version: "3.12"
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- - command: "dep-check"
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- python-version: "3.11"
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- - command: "dep-check"
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- python-version: "3.12"
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+ # exclude:
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+ # - command: "lint"
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+ # python-version: "3.11"
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+ # - command: "lint"
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+ # python-version: "3.12"
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+ # - command: "dep-check"
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+ # python-version: "3.11"
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+ # - command: "dep-check"
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+ # python-version: "3.12"
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  runs-on: ubuntu-latest
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  steps:
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  - uses: actions/checkout@v4
{gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/CHANGELOG.md RENAMED
@@ -1,6 +1,30 @@
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  # CHANGELOG
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+ ## v2.0.0 (2025-08-28)
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+
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+ ### Chores
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+
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+ - Release v2.0.0
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+ ([`be9cc5c`](https://github.com/opentargets/gentroutils/commit/be9cc5c21db58c25d0e0d4fd7482c8a9078d0d87))
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+
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+ * feat!: 2.0.0
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+
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+ * ci: update ci
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+
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+ ---------
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+
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+ Co-authored-by: Szymon Szyszkowski <69353402+project-defiant@users.noreply.github.com>
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+
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+
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+ ## v1.6.0-dev.2 (2025-08-12)
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+
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+ ### Features
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+
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+ - Update readme
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+ ([`e966927`](https://github.com/opentargets/gentroutils/commit/e966927f8c4b3c670c694258c65eb6b3da6eeb49))
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+
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+
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  ## v1.6.0-dev.1 (2025-08-12)
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  ### Features
{gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/PKG-INFO RENAMED
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  Metadata-Version: 2.4
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  Name: gentroutils
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- Version: 1.6.0.dev1
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+ Version: 2.0.0
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  Summary: Open Targets python genetics utility CLI tools
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  Author-email: Szymon Szyszkowski <ss60@sanger.ac.uk>
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  License-Expression: Apache-2.0
{gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/pyproject.toml RENAMED
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  [project]
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  authors = [{ name = "Szymon Szyszkowski", email = "ss60@sanger.ac.uk" }]
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  name = "gentroutils"
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- version = "1.6.0-dev.1"
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+ version = "2.0.0"
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  description = "Open Targets python genetics utility CLI tools"
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  dependencies = [
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  "aiohttp>=3.11.18",
{gentroutils-1.6.0.dev1 → gentroutils-2.0.0}/uv.lock RENAMED
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  [[package]]
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  name = "gentroutils"
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- version = "1.6.0.dev1"
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+ version = "2.0.0"
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  source = { editable = "." }
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  dependencies = [
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  { name = "aioftp" },
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