gentroutils 1.6.0.dev1__tar.gz → 1.6.0.dev2__tar.gz

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Files changed (73) hide show
  1. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/CHANGELOG.md +8 -0
  2. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/PKG-INFO +1 -1
  3. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/pyproject.toml +1 -1
  4. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/uv.lock +1 -1
  5. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/.RData +0 -0
  6. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/.Rhistory +0 -0
  7. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/.github/workflows/labeler.yaml +0 -0
  8. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/.github/workflows/pr.yaml +0 -0
  9. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/.github/workflows/release.yaml +0 -0
  10. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/.github/workflows/release_pr.yaml +0 -0
  11. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/.github/workflows/tag.yaml +0 -0
  12. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/.gitignore +0 -0
  13. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/.pre-commit-config.yaml +0 -0
  14. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/.vscode/extensions.json +0 -0
  15. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/.vscode/settings.json +0 -0
  16. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/Dockerfile +0 -0
  17. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/LICENSE +0 -0
  18. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/Makefile +0 -0
  19. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/README.md +0 -0
  20. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/commitlint.config.js +0 -0
  21. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/config.yaml +0 -0
  22. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/conftest.py +0 -0
  23. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/docs/00_prepare_tables_for_curation.R +0 -0
  24. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/docs/gwas_catalog_curation.md +0 -0
  25. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/setup.sh +0 -0
  26. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/src/gentroutils/__init__.py +0 -0
  27. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/src/gentroutils/errors.py +0 -0
  28. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/src/gentroutils/io/path/__init__.py +0 -0
  29. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/src/gentroutils/io/path/ftp.py +0 -0
  30. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/src/gentroutils/io/path/gcs.py +0 -0
  31. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/src/gentroutils/io/transfer/__init__.py +0 -0
  32. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/src/gentroutils/io/transfer/ftp_to_gcs.py +0 -0
  33. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/src/gentroutils/io/transfer/model.py +0 -0
  34. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/src/gentroutils/io/transfer/polars_to_gcs.py +0 -0
  35. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/src/gentroutils/parsers/__init__.py +0 -0
  36. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/src/gentroutils/parsers/curation.py +0 -0
  37. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/src/gentroutils/py.typed +0 -0
  38. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/src/gentroutils/tasks/__init__.py +0 -0
  39. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/src/gentroutils/tasks/crawl.py +0 -0
  40. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/src/gentroutils/tasks/curation.py +0 -0
  41. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/src/gentroutils/tasks/fetch.py +0 -0
  42. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/src/gentroutils/transfer.py +0 -0
  43. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/tests/data/ftp/test/databases/gwas/summary_statistics/harmonised_list.txt +0 -0
  44. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/tests/data/gsutil_list.txt +0 -0
  45. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/tests/data/manual_curation/correct_curation.tsv +0 -0
  46. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/tests/data/manual_curation/incorrect_analysisFlag_type.tsv +0 -0
  47. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/tests/data/manual_curation/incorrect_analysisFlag_value.tsv +0 -0
  48. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/tests/data/manual_curation/incorrect_columns_curation.tsv +0 -0
  49. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/tests/data/manual_curation/incorrect_publicationTitle_type.tsv +0 -0
  50. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/tests/data/manual_curation/incorrect_pubmedId_type.tsv +0 -0
  51. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/tests/data/manual_curation/incorrect_studyId_type.tsv +0 -0
  52. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/tests/data/manual_curation/incorrect_studyId_value.tsv +0 -0
  53. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/tests/data/manual_curation/incorrect_studyType_type.tsv +0 -0
  54. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/tests/data/manual_curation/incorrect_studyType_value.tsv +0 -0
  55. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/tests/data/manual_curation/incorrect_traitFromSource_type.tsv +0 -0
  56. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/tests/data/manual_curation/non_unique_studyId.tsv +0 -0
  57. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/tests/data/manual_curation/null_value_in_studyId.tsv +0 -0
  58. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/tests/data/test.h.tsv.gz +0 -0
  59. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/tests/io/conftest.py +0 -0
  60. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/tests/io/path/conftest.py +0 -0
  61. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/tests/io/path/test_ftp.py +0 -0
  62. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/tests/io/path/test_gcs.py +0 -0
  63. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/tests/io/transfer/conftest.py +0 -0
  64. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/tests/io/transfer/test_ftp_to_gcs.py +0 -0
  65. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/tests/io/transfer/test_model.py +0 -0
  66. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/tests/io/transfer/test_polars_to_gcs.py +0 -0
  67. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/tests/parsers/conftest.py +0 -0
  68. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/tests/parsers/test_curation.py +0 -0
  69. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/tests/tasks/conftest.py +0 -0
  70. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/tests/tasks/test_crawl_task.py +0 -0
  71. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/tests/tasks/test_curation_task.py +0 -0
  72. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/tests/tasks/test_fetch_task.py +0 -0
  73. {gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/tests/test_transfer.py +0 -0
{gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/CHANGELOG.md RENAMED
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  # CHANGELOG
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+ ## v1.6.0-dev.2 (2025-08-12)
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+ ### Features
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+ - Update readme
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+ ([`e966927`](https://github.com/opentargets/gentroutils/commit/e966927f8c4b3c670c694258c65eb6b3da6eeb49))
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  ## v1.6.0-dev.1 (2025-08-12)
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  ### Features
{gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/PKG-INFO RENAMED
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  Metadata-Version: 2.4
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  Name: gentroutils
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- Version: 1.6.0.dev1
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+ Version: 1.6.0.dev2
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  Summary: Open Targets python genetics utility CLI tools
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  Author-email: Szymon Szyszkowski <ss60@sanger.ac.uk>
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  License-Expression: Apache-2.0
{gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/pyproject.toml RENAMED
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  [project]
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  authors = [{ name = "Szymon Szyszkowski", email = "ss60@sanger.ac.uk" }]
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  name = "gentroutils"
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- version = "1.6.0-dev.1"
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+ version = "1.6.0-dev.2"
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  description = "Open Targets python genetics utility CLI tools"
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  dependencies = [
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  "aiohttp>=3.11.18",
{gentroutils-1.6.0.dev1 → gentroutils-1.6.0.dev2}/uv.lock RENAMED
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  [[package]]
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  name = "gentroutils"
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- version = "1.6.0.dev1"
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+ version = "1.6.0.dev2"
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  source = { editable = "." }
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  dependencies = [
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  { name = "aioftp" },