genal-python 1.4.1__tar.gz → 1.4.2__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (110) hide show
  1. {genal_python-1.4.1 → genal_python-1.4.2}/PKG-INFO +1 -1
  2. {genal_python-1.4.1 → genal_python-1.4.2}/genal/__init__.py +3 -2
  3. {genal_python-1.4.1 → genal_python-1.4.2}/pyproject.toml +1 -1
  4. {genal_python-1.4.1 → genal_python-1.4.2}/.DS_Store +0 -0
  5. {genal_python-1.4.1 → genal_python-1.4.2}/.gitignore +0 -0
  6. {genal_python-1.4.1 → genal_python-1.4.2}/.readthedocs.yaml +0 -0
  7. {genal_python-1.4.1 → genal_python-1.4.2}/Genal_flowchart.png +0 -0
  8. {genal_python-1.4.1 → genal_python-1.4.2}/LICENSE +0 -0
  9. {genal_python-1.4.1 → genal_python-1.4.2}/README.md +0 -0
  10. {genal_python-1.4.1 → genal_python-1.4.2}/docs/.DS_Store +0 -0
  11. {genal_python-1.4.1 → genal_python-1.4.2}/docs/Makefile +0 -0
  12. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/.DS_Store +0 -0
  13. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/.buildinfo +0 -0
  14. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/.doctrees/api.doctree +0 -0
  15. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/.doctrees/environment.pickle +0 -0
  16. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/.doctrees/genal.doctree +0 -0
  17. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/.doctrees/index.doctree +0 -0
  18. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/.doctrees/introduction.doctree +0 -0
  19. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/.doctrees/modules.doctree +0 -0
  20. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/_images/MR_plot_SBP_AS.png +0 -0
  21. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/_modules/genal/Geno.html +0 -0
  22. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/_modules/genal/MR.html +0 -0
  23. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/_modules/genal/MR_tools.html +0 -0
  24. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/_modules/genal/MRpresso.html +0 -0
  25. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/_modules/genal/association.html +0 -0
  26. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/_modules/genal/clump.html +0 -0
  27. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/_modules/genal/extract_prs.html +0 -0
  28. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/_modules/genal/geno_tools.html +0 -0
  29. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/_modules/genal/lift.html +0 -0
  30. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/_modules/genal/proxy.html +0 -0
  31. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/_modules/genal/snp_query.html +0 -0
  32. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/_modules/genal/tools.html +0 -0
  33. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/_modules/index.html +0 -0
  34. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/_sources/api.rst.txt +0 -0
  35. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/_sources/genal.rst.txt +0 -0
  36. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/_sources/index.rst.txt +0 -0
  37. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/_sources/introduction.rst.txt +0 -0
  38. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/_sources/modules.rst.txt +0 -0
  39. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/_static/basic.css +0 -0
  40. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/_static/css/badge_only.css +0 -0
  41. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/_static/css/fonts/Roboto-Slab-Bold.woff +0 -0
  42. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/_static/css/fonts/Roboto-Slab-Bold.woff2 +0 -0
  43. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/_static/css/fonts/Roboto-Slab-Regular.woff +0 -0
  44. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/_static/css/fonts/Roboto-Slab-Regular.woff2 +0 -0
  45. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/_static/css/fonts/fontawesome-webfont.eot +0 -0
  46. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/_static/css/fonts/fontawesome-webfont.svg +0 -0
  47. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/_static/css/fonts/fontawesome-webfont.ttf +0 -0
  48. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/_static/css/fonts/fontawesome-webfont.woff +0 -0
  49. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/_static/css/fonts/fontawesome-webfont.woff2 +0 -0
  50. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/_static/css/fonts/lato-bold-italic.woff +0 -0
  51. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/_static/css/fonts/lato-bold-italic.woff2 +0 -0
  52. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/_static/css/fonts/lato-bold.woff +0 -0
  53. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/_static/css/fonts/lato-bold.woff2 +0 -0
  54. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/_static/css/fonts/lato-normal-italic.woff +0 -0
  55. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/_static/css/fonts/lato-normal-italic.woff2 +0 -0
  56. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/_static/css/fonts/lato-normal.woff +0 -0
  57. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/_static/css/fonts/lato-normal.woff2 +0 -0
  58. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/_static/css/theme.css +0 -0
  59. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/_static/doctools.js +0 -0
  60. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/_static/documentation_options.js +0 -0
  61. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/_static/file.png +0 -0
  62. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/_static/js/badge_only.js +0 -0
  63. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/_static/js/html5shiv-printshiv.min.js +0 -0
  64. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/_static/js/html5shiv.min.js +0 -0
  65. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/_static/js/theme.js +0 -0
  66. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/_static/language_data.js +0 -0
  67. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/_static/minus.png +0 -0
  68. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/_static/plus.png +0 -0
  69. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/_static/pygments.css +0 -0
  70. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/_static/searchtools.js +0 -0
  71. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/_static/sphinx_highlight.js +0 -0
  72. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/api.html +0 -0
  73. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/genal.html +0 -0
  74. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/genindex.html +0 -0
  75. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/index.html +0 -0
  76. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/introduction.html +0 -0
  77. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/modules.html +0 -0
  78. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/objects.inv +0 -0
  79. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/py-modindex.html +0 -0
  80. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/search.html +0 -0
  81. {genal_python-1.4.1 → genal_python-1.4.2}/docs/build/searchindex.js +0 -0
  82. {genal_python-1.4.1 → genal_python-1.4.2}/docs/make.bat +0 -0
  83. {genal_python-1.4.1 → genal_python-1.4.2}/docs/requirements.txt +0 -0
  84. {genal_python-1.4.1 → genal_python-1.4.2}/docs/source/.DS_Store +0 -0
  85. {genal_python-1.4.1 → genal_python-1.4.2}/docs/source/Images/Genal_flowchart.png +0 -0
  86. {genal_python-1.4.1 → genal_python-1.4.2}/docs/source/Images/MR_plot_SBP_AS.png +0 -0
  87. {genal_python-1.4.1 → genal_python-1.4.2}/docs/source/Images/genal_logo.png +0 -0
  88. {genal_python-1.4.1 → genal_python-1.4.2}/docs/source/api.rst +0 -0
  89. {genal_python-1.4.1 → genal_python-1.4.2}/docs/source/conf.py +0 -0
  90. {genal_python-1.4.1 → genal_python-1.4.2}/docs/source/index.rst +0 -0
  91. {genal_python-1.4.1 → genal_python-1.4.2}/docs/source/introduction.rst +0 -0
  92. {genal_python-1.4.1 → genal_python-1.4.2}/docs/source/modules.rst +0 -0
  93. {genal_python-1.4.1 → genal_python-1.4.2}/genal/Geno.py +0 -0
  94. {genal_python-1.4.1 → genal_python-1.4.2}/genal/MR.py +0 -0
  95. {genal_python-1.4.1 → genal_python-1.4.2}/genal/MR_tools.py +0 -0
  96. {genal_python-1.4.1 → genal_python-1.4.2}/genal/MRpresso.py +0 -0
  97. {genal_python-1.4.1 → genal_python-1.4.2}/genal/association.py +0 -0
  98. {genal_python-1.4.1 → genal_python-1.4.2}/genal/clump.py +0 -0
  99. {genal_python-1.4.1 → genal_python-1.4.2}/genal/colocalization.py +0 -0
  100. {genal_python-1.4.1 → genal_python-1.4.2}/genal/constants.py +0 -0
  101. {genal_python-1.4.1 → genal_python-1.4.2}/genal/extract_prs.py +0 -0
  102. {genal_python-1.4.1 → genal_python-1.4.2}/genal/genes.py +0 -0
  103. {genal_python-1.4.1 → genal_python-1.4.2}/genal/geno_tools.py +0 -0
  104. {genal_python-1.4.1 → genal_python-1.4.2}/genal/lift.py +0 -0
  105. {genal_python-1.4.1 → genal_python-1.4.2}/genal/proxy.py +0 -0
  106. {genal_python-1.4.1 → genal_python-1.4.2}/genal/snp_query.py +0 -0
  107. {genal_python-1.4.1 → genal_python-1.4.2}/genal/tools.py +0 -0
  108. {genal_python-1.4.1 → genal_python-1.4.2}/genal_logo.png +0 -0
  109. {genal_python-1.4.1 → genal_python-1.4.2}/gitignore +0 -0
  110. {genal_python-1.4.1 → genal_python-1.4.2}/readthedocs.yaml +0 -0
{genal_python-1.4.1 → genal_python-1.4.2}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: genal-python
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- Version: 1.4.1
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+ Version: 1.4.2
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  Summary: A python toolkit for polygenic risk scoring and mendelian randomization.
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  Author-email: Cyprien Rivier <riviercyprien@gmail.com>
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  Requires-Python: >=3.8
{genal_python-1.4.1 → genal_python-1.4.2}/genal/__init__.py RENAMED
@@ -1,10 +1,11 @@
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  import os
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  import json
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  from .tools import default_config, write_config, set_plink, install_plink, delete_tmp, get_reference_panel_path, get_plink_path
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- from .geno_tools import Combine_Geno, filter_by_gene_func
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+ from .geno_tools import Combine_Geno
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+ from .genes import filter_by_gene_func
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  from .constants import CONFIG_DIR
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- __version__ = "1.4.1"
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+ __version__ = "1.4.2"
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  config_path = os.path.join(CONFIG_DIR, "config.json")
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{genal_python-1.4.1 → genal_python-1.4.2}/pyproject.toml RENAMED
@@ -4,7 +4,7 @@ build-backend = "flit_core.buildapi"
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  [project]
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  name = "genal-python" # Updated name for PyPI
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- version = "1.4.1"
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+ version = "1.4.2"
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  authors = [{name = "Cyprien Rivier", email = "riviercyprien@gmail.com"}]
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  description = "A python toolkit for polygenic risk scoring and mendelian randomization."
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  readme = "README.md"
{genal_python-1.4.1 → genal_python-1.4.2}/.DS_Store RENAMED
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{genal_python-1.4.1 → genal_python-1.4.2}/.gitignore RENAMED
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{genal_python-1.4.1 → genal_python-1.4.2}/LICENSE RENAMED
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{genal_python-1.4.1 → genal_python-1.4.2}/README.md RENAMED
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{genal_python-1.4.1 → genal_python-1.4.2}/docs/Makefile RENAMED
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{genal_python-1.4.1 → genal_python-1.4.2}/docs/make.bat RENAMED
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{genal_python-1.4.1 → genal_python-1.4.2}/genal/Geno.py RENAMED
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{genal_python-1.4.1 → genal_python-1.4.2}/genal/MR.py RENAMED
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{genal_python-1.4.1 → genal_python-1.4.2}/genal/lift.py RENAMED
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{genal_python-1.4.1 → genal_python-1.4.2}/gitignore RENAMED
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