genal-python 0.1__tar.gz → 0.2__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (90) hide show
  1. genal_python-0.2/.gitignore +4 -0
  2. {genal_python-0.1 → genal_python-0.2}/PKG-INFO +2 -2
  3. {genal_python-0.1 → genal_python-0.2}/README.md +1 -1
  4. genal_python-0.2/genal/.ipynb_checkpoints/Geno-checkpoint.py +1140 -0
  5. genal_python-0.2/genal/.ipynb_checkpoints/MR-checkpoint.py +740 -0
  6. genal_python-0.2/genal/.ipynb_checkpoints/MRpresso-checkpoint.py +289 -0
  7. genal_python-0.2/genal/.ipynb_checkpoints/__init__-checkpoint.py +20 -0
  8. genal_python-0.2/genal/.ipynb_checkpoints/association-checkpoint.py +332 -0
  9. genal_python-0.2/genal/.ipynb_checkpoints/geno_tools-checkpoint.py +407 -0
  10. genal_python-0.2/genal/.ipynb_checkpoints/tools-checkpoint.py +291 -0
  11. {genal_python-0.1 → genal_python-0.2}/genal/Geno.py +0 -1
  12. {genal_python-0.1 → genal_python-0.2}/genal/MR.py +2 -2
  13. {genal_python-0.1 → genal_python-0.2}/genal/MRpresso.py +1 -0
  14. {genal_python-0.1 → genal_python-0.2}/genal/__init__.py +3 -3
  15. {genal_python-0.1 → genal_python-0.2}/genal/association.py +10 -8
  16. {genal_python-0.1 → genal_python-0.2}/genal/geno_tools.py +6 -22
  17. {genal_python-0.1 → genal_python-0.2}/genal/tools.py +11 -0
  18. {genal_python-0.1 → genal_python-0.2}/pyproject.toml +1 -1
  19. genal_python-0.1/.gitignore +0 -2
  20. {genal_python-0.1 → genal_python-0.2}/LICENSE +0 -0
  21. {genal_python-0.1 → genal_python-0.2}/docs/Images/MR_plot_SBP_AS.png +0 -0
  22. {genal_python-0.1 → genal_python-0.2}/docs/Makefile +0 -0
  23. {genal_python-0.1 → genal_python-0.2}/docs/_build/doctrees/environment.pickle +0 -0
  24. {genal_python-0.1 → genal_python-0.2}/docs/_build/doctrees/index.doctree +0 -0
  25. {genal_python-0.1 → genal_python-0.2}/docs/_build/doctrees/source/genal.doctree +0 -0
  26. {genal_python-0.1 → genal_python-0.2}/docs/_build/doctrees/source/modules.doctree +0 -0
  27. {genal_python-0.1 → genal_python-0.2}/docs/_build/html/.buildinfo +0 -0
  28. {genal_python-0.1 → genal_python-0.2}/docs/_build/html/_sources/index.rst.txt +0 -0
  29. {genal_python-0.1 → genal_python-0.2}/docs/_build/html/_sources/source/genal.rst.txt +0 -0
  30. {genal_python-0.1 → genal_python-0.2}/docs/_build/html/_sources/source/modules.rst.txt +0 -0
  31. {genal_python-0.1 → genal_python-0.2}/docs/_build/html/_static/_sphinx_javascript_frameworks_compat.js +0 -0
  32. {genal_python-0.1 → genal_python-0.2}/docs/_build/html/_static/basic.css +0 -0
  33. {genal_python-0.1 → genal_python-0.2}/docs/_build/html/_static/css/badge_only.css +0 -0
  34. {genal_python-0.1 → genal_python-0.2}/docs/_build/html/_static/css/fonts/Roboto-Slab-Bold.woff +0 -0
  35. {genal_python-0.1 → genal_python-0.2}/docs/_build/html/_static/css/fonts/Roboto-Slab-Bold.woff2 +0 -0
  36. {genal_python-0.1 → genal_python-0.2}/docs/_build/html/_static/css/fonts/Roboto-Slab-Regular.woff +0 -0
  37. {genal_python-0.1 → genal_python-0.2}/docs/_build/html/_static/css/fonts/Roboto-Slab-Regular.woff2 +0 -0
  38. {genal_python-0.1 → genal_python-0.2}/docs/_build/html/_static/css/fonts/fontawesome-webfont.eot +0 -0
  39. {genal_python-0.1 → genal_python-0.2}/docs/_build/html/_static/css/fonts/fontawesome-webfont.svg +0 -0
  40. {genal_python-0.1 → genal_python-0.2}/docs/_build/html/_static/css/fonts/fontawesome-webfont.ttf +0 -0
  41. {genal_python-0.1 → genal_python-0.2}/docs/_build/html/_static/css/fonts/fontawesome-webfont.woff +0 -0
  42. {genal_python-0.1 → genal_python-0.2}/docs/_build/html/_static/css/fonts/fontawesome-webfont.woff2 +0 -0
  43. {genal_python-0.1 → genal_python-0.2}/docs/_build/html/_static/css/fonts/lato-bold-italic.woff +0 -0
  44. {genal_python-0.1 → genal_python-0.2}/docs/_build/html/_static/css/fonts/lato-bold-italic.woff2 +0 -0
  45. {genal_python-0.1 → genal_python-0.2}/docs/_build/html/_static/css/fonts/lato-bold.woff +0 -0
  46. {genal_python-0.1 → genal_python-0.2}/docs/_build/html/_static/css/fonts/lato-bold.woff2 +0 -0
  47. {genal_python-0.1 → genal_python-0.2}/docs/_build/html/_static/css/fonts/lato-normal-italic.woff +0 -0
  48. {genal_python-0.1 → genal_python-0.2}/docs/_build/html/_static/css/fonts/lato-normal-italic.woff2 +0 -0
  49. {genal_python-0.1 → genal_python-0.2}/docs/_build/html/_static/css/fonts/lato-normal.woff +0 -0
  50. {genal_python-0.1 → genal_python-0.2}/docs/_build/html/_static/css/fonts/lato-normal.woff2 +0 -0
  51. {genal_python-0.1 → genal_python-0.2}/docs/_build/html/_static/css/theme.css +0 -0
  52. {genal_python-0.1 → genal_python-0.2}/docs/_build/html/_static/doctools.js +0 -0
  53. {genal_python-0.1 → genal_python-0.2}/docs/_build/html/_static/documentation_options.js +0 -0
  54. {genal_python-0.1 → genal_python-0.2}/docs/_build/html/_static/file.png +0 -0
  55. {genal_python-0.1 → genal_python-0.2}/docs/_build/html/_static/jquery.js +0 -0
  56. {genal_python-0.1 → genal_python-0.2}/docs/_build/html/_static/js/badge_only.js +0 -0
  57. {genal_python-0.1 → genal_python-0.2}/docs/_build/html/_static/js/html5shiv-printshiv.min.js +0 -0
  58. {genal_python-0.1 → genal_python-0.2}/docs/_build/html/_static/js/html5shiv.min.js +0 -0
  59. {genal_python-0.1 → genal_python-0.2}/docs/_build/html/_static/js/theme.js +0 -0
  60. {genal_python-0.1 → genal_python-0.2}/docs/_build/html/_static/language_data.js +0 -0
  61. {genal_python-0.1 → genal_python-0.2}/docs/_build/html/_static/minus.png +0 -0
  62. {genal_python-0.1 → genal_python-0.2}/docs/_build/html/_static/plus.png +0 -0
  63. {genal_python-0.1 → genal_python-0.2}/docs/_build/html/_static/pygments.css +0 -0
  64. {genal_python-0.1 → genal_python-0.2}/docs/_build/html/_static/searchtools.js +0 -0
  65. {genal_python-0.1 → genal_python-0.2}/docs/_build/html/_static/sphinx_highlight.js +0 -0
  66. {genal_python-0.1 → genal_python-0.2}/docs/_build/html/genindex.html +0 -0
  67. {genal_python-0.1 → genal_python-0.2}/docs/_build/html/index.html +0 -0
  68. {genal_python-0.1 → genal_python-0.2}/docs/_build/html/objects.inv +0 -0
  69. {genal_python-0.1 → genal_python-0.2}/docs/_build/html/py-modindex.html +0 -0
  70. {genal_python-0.1 → genal_python-0.2}/docs/_build/html/search.html +0 -0
  71. {genal_python-0.1 → genal_python-0.2}/docs/_build/html/searchindex.js +0 -0
  72. {genal_python-0.1 → genal_python-0.2}/docs/_build/html/source/genal.html +0 -0
  73. {genal_python-0.1 → genal_python-0.2}/docs/_build/html/source/modules.html +0 -0
  74. {genal_python-0.1 → genal_python-0.2}/docs/make.bat +0 -0
  75. {genal_python-0.1 → genal_python-0.2}/docs/requirements.txt +0 -0
  76. {genal_python-0.1 → genal_python-0.2}/docs/source/api.rst +0 -0
  77. {genal_python-0.1 → genal_python-0.2}/docs/source/conf.py +0 -0
  78. {genal_python-0.1 → genal_python-0.2}/docs/source/genal.rst +0 -0
  79. {genal_python-0.1 → genal_python-0.2}/docs/source/index.rst +0 -0
  80. {genal_python-0.1 → genal_python-0.2}/docs/source/introduction.rst +0 -0
  81. {genal_python-0.1 → genal_python-0.2}/docs/source/modules.rst +0 -0
  82. {genal_python-0.1 → genal_python-0.2}/genal/MR_tools.py +0 -0
  83. {genal_python-0.1 → genal_python-0.2}/genal/clump.py +0 -0
  84. {genal_python-0.1 → genal_python-0.2}/genal/constants.py +0 -0
  85. {genal_python-0.1 → genal_python-0.2}/genal/extract_prs.py +0 -0
  86. {genal_python-0.1 → genal_python-0.2}/genal/lift.py +0 -0
  87. {genal_python-0.1 → genal_python-0.2}/genal/proxy.py +0 -0
  88. {genal_python-0.1 → genal_python-0.2}/gitignore +0 -0
  89. {genal_python-0.1 → genal_python-0.2}/readthedocs.yaml +0 -0
  90. {genal_python-0.1 → genal_python-0.2}/requirements.txt +0 -0
genal_python-0.2/.gitignore ADDED
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+ __pycache__/
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+ dist/
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+ .ipynb_checkpoints/
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+ ipynb_checkpoints/
{genal_python-0.1 → genal_python-0.2}/PKG-INFO RENAMED
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  Metadata-Version: 2.1
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  Name: genal-python
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- Version: 0.1
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+ Version: 0.2
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  Summary: A python toolkit for polygenic risk scoring and mendelian randomization.
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  Author-email: Cyprien Rivier <riviercyprien@gmail.com>
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  Requires-Python: >=3.7
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- **This project was develop by Cyprien A. Rivier**
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+ **This project was developed by Cyprien A. Rivier**
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  # Table of contents
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  1. [Introduction](#introduction)
{genal_python-0.1 → genal_python-0.2}/README.md RENAMED
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- **This project was develop by Cyprien A. Rivier**
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+ **This project was developed by Cyprien A. Rivier**
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  # Table of contents
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  1. [Introduction](#introduction)